Archive
Hot Topics of the Day are picked by experts to capture the latest information and publications on public health genomics and precision health for various diseases and health topics. Sources include published scientific literature, reviews, blogs and popular press articles.
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Archived Hot Topics of the Day By Date
A digital health algorithm to guide antibiotic prescription in pediatric outpatient care: a cluster randomized controlled trial.
Rainer Tan et al. Nat Med 2023 12
(Posted: Dec 22, 2023 10AM)
Harnessing genomics for antimicrobial resistance surveillance
The Lancet Series, November 2023
(Posted: Nov 17, 2023 8AM)
Global trends in the increasing prevalence of the fosfomycin resistance genenin Staphylococcus aureus
DFM Monte et al, Lancet Microbe, November 2023
(Posted: Nov 11, 2023 3PM)
Genomic surveillance for antimicrobial resistance - a One Health perspective.
Steven P Djordjevic et al. Nat Rev Genet 2023 9
(Posted: Sep 29, 2023 7AM)
How to fight antibiotic resistance.
Mike May et al. Nat Med 2023 7 (7) 1583-1586
(Posted: Jul 19, 2023 7AM)
The evolution and international spread of extensively drug resistant Shigella sonnei.
Lewis C E Mason et al. Nature communications 2023 4 (1) 1983
(Posted: Apr 10, 2023 7AM)
An ISO-certified genomics workflow for identification and surveillance of antimicrobial resistance
NL Sherry et al, Nature Comm, January 4, 2023
(Posted: Jan 05, 2023 5AM)
Metagenomic prediction of antimicrobial resistance in critically ill patients with lower respiratory tract infections
PH Serpa et al, Genome Medicine, July 12, 2022
(Posted: Jul 12, 2022 1PM)
Tracing the origins of antibiotic resistance
CMJE vandenbrook et al, Nature Medicine, March 22, 2022
(Posted: Mar 26, 2022 3PM)
Exploiting genomics to mitigate the public health impact of antimicrobial resistance
C Waddington et al, Genome Medicine, February 16, 2022
(Posted: Feb 17, 2022 10AM)
Whole genome sequencing-based classification of human-related Haemophilus species and detection of antimicrobial resistance genes
M Diricks et al, Genome Medicine, February 9, 2022
(Posted: Feb 10, 2022 8AM)
Direct antimicrobial resistance prediction from clinical MALDI-TOF mass spectra using machine learning
C Weiss et al, Nature Medicine, January 10, 2022
(Posted: Jan 11, 2022 8AM)
Innovative tools take aim at antibiotic-resistant microbes
J Madhusoodanan, Nature, August 23, 2021
(Posted: Aug 24, 2021 8AM)
Vaccinology in the post−COVID-19 era
R Rappuoli et al, PNAS< January 11, 2021
(Posted: Jan 12, 2021 11AM)
A decision algorithm to promote outpatient antimicrobial stewardship for uncomplicated urinary tract infection
S Kanjilal et al, Science Trans Med, November 4, 2020
(Posted: Nov 05, 2020 6AM)
Emerging Drug-Resistant Meningitis Detected in the US
BM Kuehn, JAMA, August 11, 2020
(Posted: Aug 13, 2020 10AM)
Uncovering hidden antimicrobial resistance patterns within the hospital microbiome
BW Haak et al, Nature Medicine, June 8, 2020
(Posted: Jun 09, 2020 11AM)
Editorial: Pathogen Genomics: Empowering Infectious Disease Surveillance and Outbreak Investigations
MJ Struenlens et al, Front Public Health, May 19, 2020
(Posted: May 20, 2020 8AM)
Powerful antibiotics discovered using AI- Machine learning spots molecules that work even against ‘untreatable’ strains of bacteria.
J Marchant, Nature, February 20, 2020
(Posted: Feb 21, 2020 9AM)
Notes from the Field: Carbapenem-resistant Klebsiella pneumoniae with mcr-1 Gene Identified in a Hospitalized Patient — Wyoming, January 2019
H Rhoades et al, MMWR, February 14, 2020
(Posted: Feb 18, 2020 9AM)
One year cross-sectional study in adult and neonatal intensive care units reveals the bacterial and antimicrobial resistance genes profiles in patients and hospital surfaces
AP Christoff et al, MedRXIV, February 13, 2020
(Posted: Feb 15, 2020 9AM)
Innovative and rapid antimicrobial susceptibility testing systems
AV Belkum et al, Nature Rev Microbiology, February 2020
(Posted: Feb 14, 2020 8AM)
U.S. continues to lead the fight against antibiotic resistance
A Azar et al, Stat News, December 4, 2019
(Posted: Dec 04, 2019 0PM)
Biggest Threats and Data- 2019 AR Threats Report
CDC, November 2019
(Posted: Nov 15, 2019 7AM)
Machine learning based prediction of antibiotic sensitivity in patients with critical illness
D Ghosh et al, MedRXIV, September 20, 2019
(Posted: Sep 20, 2019 9AM)
Pathogen Genomics: Empowering Infectious Disease Surveillance and Outbreak Investigations
Frontiers Research Topic, 2019
(Posted: Aug 28, 2019 7AM)
Public Health and Epidemiology Informatics: Can Artificial Intelligence Help Future Global Challenges? An Overview of Antimicrobial Resistance and Impact of Climate Change in Disease Epidemiology.
Rodríguez-González Alejandro et al. Yearbook of medical informatics 2019 Aug 28(1) 224-231
(Posted: Aug 21, 2019 9AM)
Whole genome sequencing revealed new molecular characteristics in multidrug resistant staphylococci recovered from high frequency touched surfaces in London
R Cave et al, Scientific Reports, August 1, 2019
(Posted: Aug 02, 2019 8AM)
Genomic epidemiology of syphilis reveals independent emergence of macrolide resistance across multiple circulating lineages
MA Beale et al, Nature Communications, July 22, 2019
(Posted: Jul 23, 2019 8AM)
Personal clinical history predicts antibiotic resistance of urinary tract infections
I Yelin et al, Nature Medicine, July 4, 2019
(Posted: Jul 05, 2019 8AM)
Machine-learning-assisted selection of antibiotic prescription
X Didelot et al, Nature Medicine, July 4, 2019
(Posted: Jul 05, 2019 8AM)
Sequencing-based methods and resources to study antimicrobial resistance
M Boolchaldani et al, Nature Reviews Genetics, March 18, 2019
(Posted: Mar 19, 2019 7AM)
This chip can quickly identify the microbes living in your body
RF Service, Science, July 16, 2018
(Posted: Jul 17, 2018 10AM)
Multiplexed identification, quantification and genotyping of infectious agents using a semiconductor biochip.
Hassibi Arjang et al. Nature biotechnology 2018 Jul
(Posted: Jul 17, 2018 10AM)
Genomic insights into the emergence and spread of antimicrobial-resistant bacterial pathogens
S Baker et al, Science, May 18, 2018
(Posted: May 18, 2018 8AM)
Be Antibiotics Aware: Smart Use, Best Care
CDC Public Health Grand Round, May 15, 2018
(Posted: May 15, 2018 10AM)
Stop Spread of Unusual Antibiotic Resistance
(Posted: Apr 24, 2018 9AM)
Containing Unusual Resistance
CDC Vital Signs, Apr 3, 2018
(Posted: Apr 03, 2018 3PM)
What Everyone Should Know
(Posted: Mar 06, 2018 9AM)
Narrowing the spectrum: the new frontier of precision antimicrobials
AE Paharik et al, Genome Medicine, December 2017
(Posted: Dec 15, 2017 10AM)
Comparison of phenotypic and WGS-derived antimicrobial resistance profiles of Salmonella enterica serovars Typhi and Paratyphi.
Day Martin R et al. The Journal of antimicrobial chemotherapy 2017 Dec
(Posted: Dec 08, 2017 10AM)
Action and resistance mechanisms of antibiotics: A guide for clinicians.
Kapoor Garima et al. Journal of anaesthesiology, clinical pharmacology (3) 300-305
(Posted: Nov 13, 2017 11AM)
Phage Therapys Role in Combating Antibiotic-Resistant Pathogens
J Lyon, JAMA, Oct 25, 2017
(Posted: Oct 25, 2017 11AM)
Understanding and overcoming antibiotic resistance.
Richardson Lauren A et al. PLoS biology 2017 Aug (8) e2003775
(Posted: Aug 31, 2017 7AM)
Antimicrobial resistance: The complex challenge of measurement to inform policy and the public.
Wernli Didier et al. PLoS medicine 2017 Aug (8) e1002378
(Posted: Aug 31, 2017 7AM)
Next-generation sequencing to monitor the spread of antimicrobial resistance
M Otto, Genome Medicine, July 2017
(Posted: Aug 02, 2017 0PM)
National Strategy to Combat Antibiotic-Resistant Bacteria
(Posted: Jul 30, 2017 8PM)
Genomic sequencing of Neisseria gonorrhoeae to respond to the urgent threat of antimicrobial-resistant gonorrhea
(Posted: Jul 30, 2017 8PM)
Antibiotic Resistance, Food, and Food-Producing Animals
(Posted: Jul 30, 2017 11AM)
Next-generation approaches to understand and combat the antibiotic resistome.
Crofts Terence S et al. Nature reviews. Microbiology 2017 Jul (7) 422-434
(Posted: Jul 28, 2017 9AM)
Antibiotic Use in the United States, 2017: Progress and Opportunities
(Posted: Jul 28, 2017 9AM)
Resistance to last-ditch antibiotic has spread farther than anticipated
S Reardon, Nature News, June 12, 2017
(Posted: Jun 13, 2017 8AM)
Infectious Fight: Tackling the Inevitability of Resistance, One Genome at a Time
Clinical Omics, February 7, 2017
(Posted: Feb 08, 2017 8AM)
The Microbiome & Innovations to Slow Antibiotic Resistance
(Posted: Jan 12, 2017 0PM)
CDC's strategic investments empower the nation to combat antibiotic resistance
(Posted: Jan 12, 2017 0PM)
CDC AR Solutions Initiative Fact Sheets by Topic
(Posted: Jan 12, 2017 0PM)
The role of whole genome sequencing in antimicrobial susceptibility testing of bacteria: report of EUROCAST committee
(Posted: Dec 23, 2016 6AM)
Scientists seek a way to predict antibiotic resistance
S Love, Stat News, November 7, 2016
(Posted: Nov 07, 2016 8AM)
Strain Dependent Genetic Networks for Antibiotic-Sensitivity in a Bacterial Pathogen with a Large Pan-Genome.
van Opijnen Tim et al. PLoS pathogens 2016 Sep (9) e1005869
(Posted: Nov 07, 2016 8AM)
Genomic and functional techniques to mine the microbiome for novel antimicrobials and antimicrobial resistance genes.
Adu-Oppong Boahemaa et al. Annals of the New York Academy of Sciences 2016 Oct
(Posted: Nov 02, 2016 6AM)
Functional Metagenomics as a Tool for Identification of New Antibiotic Resistance Genes from Natural Environments.
Dos Santos Débora Farage Knupp et al. Microbial ecology 2016 Oct
(Posted: Oct 07, 2016 8AM)
Antimicrobial Resistance
HD Marston et al, JAMA, September 20, 2016
(Posted: Sep 20, 2016 7PM)
Antibiotic Resistant Bacteria and the World's Peril
L Garret, Scientific American Blog, Sept 19, 2016
(Posted: Sep 20, 2016 7AM)
Investigation of Escherichia coli Harboring the mcr-1 Resistance Gene Connecticut, 2016
MMWR, September 9, 2016
(Posted: Sep 09, 2016 5PM)
Tracking mcr -1
(Posted: Sep 09, 2016 5PM)
Investigation of First Identified mcr-1 Gene in an Isolate from a U.S. Patient Pennsylvania, 2016
MMWR, September 9, 2016
(Posted: Sep 09, 2016 5PM)
Finding risks in a flood of genetic data: Sequencing improvements aid resistance study, outbreak response
G Cima, JAVMA News, July 13, 2016
(Posted: Jul 18, 2016 7PM)
Neisseria gonorrhoeae Antimicrobial Susceptibility Surveillance The Gonococcal Isolate Surveillance Project, 27 Sites, United States, 2014
CDC MMWR, July 15, 2016
(Posted: Jul 15, 2016 2PM)
Prevention Epicenters Program supports research on new ways to prevent superbugs and improve healthcare quality
(Posted: Jul 01, 2016 10AM)
FDA clears first test to detect specific genetic markers for certain antibiotic-resistant bacteria directly from clinical specimens
FDA, June 29, 2016
(Posted: Jun 29, 2016 8PM)
Nature Web Collection on Antimicrobial Resistance
June 2016
(Posted: Jun 17, 2016 11AM)
Infection Raises Specter of Superbugs Resistant to All Antibiotics
New York Times, May 2016
(Posted: May 31, 2016 8AM)
AMD Projects: Combating Healthcare-associated Infections
(Posted: Mar 25, 2016 1PM)
Making Health Care Safer: Protect patients from antibiotic resistance
(Posted: Mar 03, 2016 1PM)
Antimicrobial Resistance Genes and Modeling of Treatment Failure in Bacterial Vaginosis: Clinical Study of 289 Symptomatic Women.
Bostwick David G et al. Journal of medical microbiology 2016 Feb
(Posted: Mar 01, 2016 8AM)
Why is antibiotic resistance a deadly emerging disease?
Courvalin Patrice et al. Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases 2016 Jan
(Posted: Mar 01, 2016 8AM)
Leaders Committed to Antibiotic Stewardship
(Posted: Mar 01, 2016 8AM)
Spread of antibiotic-resistance gene does not spell bacterial apocalypse yet
S Reardon, Nature News, December 21, 2015
(Posted: Dec 21, 2015 2PM)
Rapid antibiotic-resistance predictions from genome sequence data for Staphylococcus aureus and Mycobacterium tuberculosis
P Bradley et al, Nature Communications, December 21, 2015
(Posted: Dec 21, 2015 10AM)
Emergence of plasmid-mediated colistin resistance mechanism MCR-1 in animals and human beings in China: a microbiological and molecular biological study
YY Liu et al, Lancet Infectious Diseases, November 18, 2015
(Posted: Nov 19, 2015 0PM)
High-throughput functional screening reveals low frequency of antibiotic resistance genes in DNA recovered from the Upper Mississippi River.
Staley Christopher et al. Journal of water and health 2015 Sep (3) 693-703
(Posted: Nov 16, 2015 3PM)
Resistance gene naming and numbering: is it a new gene or not?
Hall Ruth M et al. The Journal of antimicrobial chemotherapy 2015 Oct
(Posted: Nov 16, 2015 3PM)
Same Exposure but Two Radically Different Responses to Antibiotics: Resilience of the Salivary Microbiome versus Long-Term Microbial Shifts in Feces.
Zaura Egija et al. mBio 2015 (6)
(Posted: Nov 16, 2015 3PM)
Antibiotics Aren't Always the Answer
(Posted: Nov 16, 2015 3PM)
Meta-genomic analysis of toilet waste from long distance flights; a step towards global surveillance of infectious diseases and antimicrobial resistance.
Nordahl Petersen Thomas et al. Sci Rep 2015 11444
(Posted: Aug 19, 2015 0PM)
Antibiotic Resistant and Virulence Determinants of Staphylococcus haemolyticus C10A as Revealed by Whole Genome Sequencing.
Chan Kok-Gan et al. J Genomics 2015 72-4
(Posted: Aug 11, 2015 3PM)
Potential of metabolomics to reveal Burkholderia cepacia complex pathogenesis and antibiotic resistance.
Shommu Nusrat S et al. Front Microbiol 2015 668
(Posted: Aug 11, 2015 3PM)
DNA-Microarray-based Genotyping of Clostridium difficile.
Gawlik Darius et al. BMC Microbiol. 2015 158
(Posted: Aug 11, 2015 3PM)
Vancomycin-resistant enterococcal infections: epidemiology, clinical manifestations, and optimal management.
O'Driscoll Tristan et al. Infect Drug Resist 2015 217-30
(Posted: Aug 11, 2015 3PM)
Review of Established and Innovative Detection Methods for Carbapenemase-Producing gram-negative Bacteria.
Osei Sekyere John et al. J. Appl. Microbiol. 2015 Aug 6.
(Posted: Aug 11, 2015 3PM)
Genomic analysis of diversity, population structure, virulence, and antimicrobial resistance in Klebsiella pneumoniae, an urgent threat to public health.
Holt Kathryn E et al. Proc. Natl. Acad. Sci. U.S.A. 2015 Jul 7. (27) E3574-81
(Posted: Jul 29, 2015 3PM)
Novel Programs and Discoveries Aim to Combat Antibiotic Resistance.
Hampton Tracy et al. JAMA 2015 Jun 3.
(Posted: Jun 04, 2015 0PM)
Over 150 Animal and Health Stakeholders Join White House Effort to Combat Antibiotic Resistance
White House Fact Sheet, June 2, 2015
(Posted: Jun 02, 2015 0PM)
The human gut resistome.
van Schaik Willem et al. Philos. Trans. R. Soc. Lond., B, Biol. Sci. 2015 Jun 5. (1670)
(Posted: Jun 02, 2015 9AM)
Targets for Combating the Evolution of Acquired Antibiotic Resistance.
Culyba Matthew J et al. Biochemistry 2015 May 27.
(Posted: Jun 02, 2015 9AM)
Rapid antibiotic resistance predictions from genome sequence data for S. aureus and M. tuberculosis.
Phelim Bradley et al. BioRXIV Server, April 26, 2015
(Posted: Apr 30, 2015 8PM)
WHO report finds systems to combat antibiotic resistance lacking
April 29, 2015
(Posted: Apr 29, 2015 9AM)
Obama unveils $1.2B plan to tackle drug-resistant bacteria
By Sarah Ferris, the Hill, March 27, 2015
(Posted: Mar 31, 2015 10AM)
Population structure of Neisseria gonorrhoeae based on whole genome data and its relationship with antibiotic resistance.
Ezewudo Matthew N et al. PeerJ 2015 e806
(Posted: Mar 30, 2015 5PM)
Investigation of a possible outbreak of carbapenem-resistant Acinetobacter baumannii in Odense, Denmark using PFGE, MLST and whole-genome-based SNPs.
Hammerum Anette M et al. J. Antimicrob. Chemother. 2015 Mar 19.
(Posted: Mar 30, 2015 5PM)
Disclaimer: Articles listed in Hot Topics of the Day are selected by Public Health Genomics Branch to provide current awareness of the scientific literature and news. Inclusion in the update does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
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- Page last updated:Apr 25, 2024
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