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Infectious Diseases
What's New
Last Posted: Mar 19, 2019
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Comparative analysis of HIV sequences in real time for public health.
Wertheim Joel O et al. Current opinion in HIV and AIDS 2019 Mar -
HLA-B*14 allele predicts HIV-1 mother-to-child-transmission, in Salvador, Brazil.
Angulo Juan Manuel Cubillos et al. The Brazilian journal of infectious diseases : an official publication of the Brazilian Society of Infectious Diseases 2019 Feb -
Precision medicine in resistant Tuberculosis: Treat the correct patient, at the correct time, with the correct drug.
Mahomed Sharana et al. The Journal of infection 2019 Mar -
Sequencing-based methods and resources to study antimicrobial resistance
M Boolchaldani et al, Nature Reviews Genetics, March 18, 2019 -
The ethics of sequencing infectious disease pathogens for clinical and public health.
Johnson Stephanie B et al. Nature reviews. Genetics 2019 Mar -
A systematic phylogenetic approach to study the interaction of HIV-1 with coinfections, non-communicable and opportunistic diseases.
Kusejko Katharina et al. The Journal of infectious diseases 2019 Mar -
Are many patients diagnosed with healthcare-associated Clostridioides difficile infection colonized with the infecting strain on admission?
Gonzalez-Orta Melany et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2019 Mar -
Battling disease by giving mosquitoes an antimalarial drug.
Hemingway Janet et al. Nature 2019 Mar (7747) 185-186 -
Detection in the United Kingdom of the Neisseria gonorrhoeae FC428 clone, with ceftriaxone resistance and intermediate resistance to azithromycin, October to December 2018.
Eyre David W et al. Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin 2019 Mar (10) -
Development and multicentric validation of a lateral flow immunoassay for the rapid detection of MCR-1-producing Enterobacteriaceae .
Volland Hervé et al. Journal of clinical microbiology 2019 Mar
About Infectious Diseases PHGKB
The Infectious Diseases Public Health Genomics Knowledge Base (PHGKB) is an online, continuously updated, searchable database of published scientific literature, CDC resources, and other materials that address the translation of genomic discoveries into improved
Advanced Molecular Detection Clips (current edition) Published on Mar 14, 2019
Advanced Molecular Detection Clips (AMD Clips) are selected weekly from a variety of sources, including PubMed, journal tables of contents, and online media. Special emphasis is given to the use of next-generation genetic sequencing in infectious disease public health surveillance, investigation, and development of new diagnostics and interventions. The collection is not comprehensive but aims to capture highlights, while surveying a wide range of topics. CDC-authored articles are flagged. Items marked I&E address aspects of implementation or evaluation in clinical or public health practice.
NEWS
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Genetic Shifts in Bordetella May Explain Surge in Pertussis
Parry NM. Medscape, Mar 13, 2019. -
Sewage study highlights global antimicrobial resistance disparity
Dall C. CIDRAP, Mar 11, 2019. -
Did Black Death strike sub-Saharan Africa?
Wade L. Science, Mar 8, 2019. -
Lab in South African Township to Sample TB from Breathed Air
Nordling L. The Scientist, Mar 8, 2019. -
NCI Develops High-Throughput, Low-Cost Sequencing Assay for HPV Research
Johnson M. GenomeWeb, Mar 7, 2019. -
Microbiome-based drugs likely to face FDAs biologics pathway
Sheridan K. STAT, Mar 11, 2019. -
A Gulp Of Genetically Modified Bacteria Might Someday Treat A Range Of Illnesses
Stein R. NPR, Mar 8, 2019.
EVENTS / TRAINING / WEB RESOURCES
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Run the Prokaryotic Genome Annotation Pipeline (PGAP) on your own machine
(announcement) NCBI, Mar 13, 2019. -
Track pathogenic organisms promptly with the National Database of Antibiotic Resistant Organisms
(blog post) NCBI, Mar 11, 2019. -
Innovative teaching in the digital age goes viral
(comment, links) Gomez-Lucia E. Nat Microbiol, Mar 11, 2019.
CONCEPTS / COMMENTS
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The Special Pathogens Research Network: Enabling Research Readiness.
Kraft Colleen S et al. Health security (1) 35-45
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How Africa can quell the next disease outbreaks.
Nkengasong John N et al. Nature 2019 Mar (7747) 147 -
Battling disease by giving mosquitoes an antimalarial drug.
Hemingway Janet et al. Nature 2019 Mar (7747) 185-186
METHODS / TOOLS
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Rapid Sequencing of Multiple RNA Viruses in Their Native Form.
Wongsurawat Thidathip et al. Frontiers in microbiology 2019 260 -
HEVnet: a One Health, collaborative, interdisciplinary network and sequence data repository for enhanced hepatitis E virus molecular typing, characterisation and epidemiological investigations.
Mulder Annemieke Christine et al. Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin 2019 Mar (10)
EVOLUTION / ECOLOGY / POPULATIONS
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Phylogenetic relationships and regional spread of meningococcal strains in the meningitis belt, 2011-2016.
Topaz Nadav et al. EBioMedicine 2019 Mar
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A One Health study of the genetic relatedness of Klebsiella pneumoniae and their mobile elements in the East of England.
Ludden Catherine et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2019 Mar -
Genomic Analyses of >3,100 Nasopharyngeal Pneumococci Revealed Significant Differences Between Pneumococci Recovered in Four Different Geographical Regions.
van Tonder Andries J et al. Frontiers in microbiology 2019 317 -
Large genomics datasets shed light on the evolution of the Mycobacterium tuberculosis complex.
Chiner-Oms Álvaro et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2019 Feb -
Tracing Ancient Human Migrations into Sahul Using Hepatitis B Virus Genomes.
Yuen Lilly K W et al. Molecular biology and evolution 2019 Feb -
Genomic characterization of hepatitis C virus transmitted founder variants with deep sequencing.
Abayasingam Arunasingam et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2019 Mar -
Genetic Evidence of Middle East Respiratory Syndrome Coronavirus (MERS-Cov) and Widespread Seroprevalence among Camels in Kenya.
Ommeh Sheila et al. Virologica Sinica 2018 Dec (6) 484-492 -
Molecular epidemiology, evolution and phylogeny of SARS coronavirus.
Luk Hayes K H et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2019 Mar -
Evolution of rotavirus C in humans and several domestic animal species.
Trovão Nídia S et al. Zoonoses and public health 2019 Mar -
Seasons of change: Mechanisms of genome evolution in human fungal pathogens.
Fillinger Robert J et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2019 Feb
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
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Plasmid-Mediated Transmission of KPC-2 Carbapenemase in Enterobacteriaceae in Critically Ill Patients.
Schweizer Christian et al. Frontiers in microbiology 2019 276 -
Detection in the United Kingdom of the Neisseria gonorrhoeae FC428 clone, with ceftriaxone resistance and intermediate resistance to azithromycin, October to December 2018.
Eyre David W et al. Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin 2019 Mar (10) -
A systematic phylogenetic approach to study the interaction of HIV-1 with coinfections, non-communicable and opportunistic diseases.
Kusejko Katharina et al. The Journal of infectious diseases 2019 Mar
DETECTION / DIAGNOSIS
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Healthcare provider diagnostic testing practices for identification of Clostridioides (Clostridium) difficile in children: an Emerging Infections Network survey.
Kociolek Larry K et al. Infection control and hospital epidemiology 2019 Feb 1-5
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Global monitoring of antimicrobial resistance based on metagenomics analyses of urban sewage.
Hendriksen Rene S et al. Nature communications 2019 Mar (1) 1124 -
Are many patients diagnosed with healthcare-associated Clostridioides difficile infection colonized with the infecting strain on admission?
Gonzalez-Orta Melany et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2019 Mar -
Proteotyping as alternate typing method to differentiate Campylobacter coli clades.
Emele Matthias Frederik et al. Scientific reports 2019 Mar (1) 4244 -
Development and multicentric validation of a lateral flow immunoassay for the rapid detection of MCR-1-producing Enterobacteriaceae .
Volland Hervé et al. Journal of clinical microbiology 2019 Mar -
Whole genome sequencing for drug resistance determination in Mycobacterium tuberculosis .
Omar Shaheed V et al. African journal of laboratory medicine 2019 (1) 801
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Molecular and genomic typing for tuberculosis surveillance: A survey study in 26 European countries.
Andrés Marta et al. PloS one 2019 (3) e0210080
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Results of a Pilot Study of a Mail-Based Human Papillomavirus Self-Testing Program for Underscreened Women From Appalachian Ohio.
Reiter Paul L et al. Sexually transmitted diseases 2019 Mar (3) 185-190
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Hepatitis E virus in blood donors in England, 2016 to 2017: from selective to universal screening.
Harvala Heli et al. Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin 2019 Mar (10)
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Viral diversity from next-generation sequencing of HIV-1 samples provides precise estimates of infection recency and time since infection.
Carlisle Louisa A et al. The Journal of infectious diseases 2019 Mar -
Uncovering Trypanosoma spp. diversity of wild mammals by the use of DNA from blood clots.
Rodrigues Marina Silva et al. International journal for parasitology. Parasites and wildlife 2019 Apr 171-181
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
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Molecular characterization and evolution of the first outbreak of vancomycin resistant Enterococcus faecium in Western Australia.
Lee Terence et al. International journal of antimicrobial agents 2019 Mar -
Update on Vaccine-Derived Poliovirus Outbreaks - Democratic Republic of the Congo and Horn of Africa, 2017-2018.
Mbaeyi Chukwuma et al. MMWR. Morbidity and mortality weekly report 2019 Mar (9) 225-230
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Inconsistent temporal patterns of genetic variation of HCV among high-risk subjects may impact inference of transmission networks.
Rose Rebecca et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2019 Feb -
Tracing the Impact of Public Health Interventions on HIV-1 Transmission in Portugal Using Molecular Epidemiology.
Vasylyeva Tetyana I et al. The Journal of infectious diseases 2019 Feb
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Use of Next Generation Sequencing to study two cowpox virus outbreaks.
Antwerpen Markus H et al. PeerJ 2019 e6561 -
Genomic, epidemiological and digital surveillance of Chikungunya virus in the Brazilian Amazon.
Naveca Felipe Gomes et al. PLoS neglected tropical diseases 2019 Mar (3) e0007065
HOST-MICROBE INTERACTIONS
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Metabolomic Insights into Human Arboviral Infections: Dengue, Chikungunya, and Zika Viruses.
Byers Nathaniel M et al. Viruses 2019 Mar (3) -
Host, Symbionts, and the Microbiome: The Missing Tripartite Interaction.
Brinker Pina et al. Trends in microbiology 2019 Mar
indicates that at least one CDC-affiliated author; indicates that the article addresses aspects of implementation or evaluation in clinical or public health practice. About Advanced Molecular Detection Clips
Clips are selected weekly from a variety of sources, including PubMed, journal tables of contents, and online media. Special emphasis is given to the use of next-generation genetic sequencing in infectious disease public health surveillance, investigation, and development of new diagnostics and interventions. The collection is not comprehensive but aims to capture highlights, while surveying a wide range of topics. CDC-authored articles are flagged. Items marked I&E address aspects of implementation or evaluation in clinical or public health practice.
Archived Editions
Search AMD Clips database
Visit AMD website
Disclaimer: Articles listed in the Public Health Knowledge Base are selected by the CDC Office of Public Health Genomics to provide current awareness of the literature and news. Inclusion in the update does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the update, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.