Pathogen Advanced Molecular Detection Database

Illumina to Offer Lower Prices on Pathogen Sequencing for Public Health in Lower-Income Countries
GenomeWeb, Nov 13, 2023.

CDC warns about Salmonella outbreak linked to recalled dry pet food
Schnirring L. CIDRAP, Nov 10, 2023.

Study shows first evidence of HPV strain replacement
Soucheray S. CIDRAP, Nov 9, 2023.

Deepfakes could supercharge health care's misinformation problem
Reed T. Axios, Nov 14, 2023.

AI writes summaries of preprints in bioRxiv trial
Callaway E. Nature, Nov 14, 2023.

Incongruence in the phylogenomics era.
Jacob L Steenwyk et al. Nat Rev Genet 2023 6 (12) 834-850

The HIV epidemic 40 years on.
Linda-Gail Bekker et al. Nat Rev Microbiol 2023 10 (12) 767-768

Data Sharing - A New Era for Research Funded by the U.S. Government.
Joseph S Ross et al. N Engl J Med 2023 11

Surveillance for variants of SARS-CoV-2 to inform risk assessments.
Homa Attar Cohen et al. Bull World Health Organ 2023 11 (11) 707-716

Strengthening influenza surveillance capacity in the Eastern Mediterranean Region: Nearly two decades of direct support from the United States Centers for Disease Control and Prevention.
Kinda Zureick et al. Influenza Other Respir Viruses 2023 11 (11) e13220

Development of a portable on-site applicable metagenomic data generation workflow for enhanced pathogen and antimicrobial resistance surveillance.
Bram Bloemen et al. Sci Rep 2023 11 (1) 19656

The European Nucleotide Archive in 2023.
David Yuan et al. Nucleic Acids Res 2023 11

CGG toolkit: Software components for computational genomics.
Dimitrios Vasileiou et al. PLoS Comput Biol 2023 11 (11) e1011498

Optimal reference genes for RNA tissue analysis in small animal models of hemorrhagic fever viruses.
Katherine A Davies et al. Sci Rep 2023 11 (1) 19384

Rapid profiling of Plasmodium parasites from genome sequences to assist malaria control.
Jody E Phelan et al. Genome Med 2023 11 (1) 96

Population structure of Salmonella enterica Typhi in Harare, Zimbabwe (2012-19) before typhoid conjugate vaccine roll-out: a genomic epidemiology study.
Gaetan Thilliez et al. Lancet Microbe 2023 11

Genomic profiling of extended-spectrum β-lactamase-producing Escherichia coli from Pets in the United Arab Emirates: Unveiling colistin resistance mediated by mcr-1.1 and its probable transmission from chicken meat - A One Health perspective.
Ihab Habib et al. J Infect Public Health 2023 11

The emergence and diversification of a zoonotic pathogen from within the microbiota of intensively farmed pigs.
Gemma G R Murray et al. Proc Natl Acad Sci U S A 2023 11 (47) e2307773120

Viral genomic features predict orthopoxvirus reservoir hosts.
Katie K Tseng et al. bioRxiv 2023 11

Genetic drift and purifying selection shape within-host influenza A virus populations during natural swine infections.
David VanInsberghe et al. bioRxiv 2023 11

Emergence of bedaquiline-resistant tuberculosis and of multidrug-resistant and extensively drug-resistant Mycobacterium tuberculosis strains with rpoB Ile491Phe mutation not detected by Xpert MTB/RIF in Mozambique: a retrospective observational study.
Ivan Barilar et al. Lancet Infect Dis 2023 11

Impact of pretreatment low-abundance HIV-1 drug resistance on virological failure after 1 year of antiretroviral therapy in China.
Miaomiao Li et al. J Antimicrob Chemother 2023 9 (11) 2743-2751

Recombinase Polymerase Amplification-Based Biosensors for Rapid Zoonoses Screening.
Xinrui Feng et al. Int J Nanomedicine 2023 11 6311-6331

Advantages and limitations of current diagnostic laboratory approaches in syphilis and congenital syphilis.
Weiping Cao et al. Expert Rev Anti Infect Ther 2023 11

First identification of the SARS-COV-2/XBB.1.5 sublineage among indigenous COVID-19 cases through the influenza sentinel surveillance system in Niger.
Adamou Lagare et al. Heliyon 2023 11 (11) e20916

Monoclonal Antibodies as SARS-CoV-2 Serology Standards: Experimental Validation and Broader Implications for Correlates of Protection.
Lili Wang et al. Int J Mol Sci 2023 11 (21)

Untargeted metagenomic sequencing identifies Toscana virus in patients with idiopathic meningitis, southern Spain, 2015 to 2019.
Fabiana Gámbaro et al. Euro Surveill 2023 11 (45)

A novel duplex qualitative real-time PCR assay for the detection and differentiation of Plasmodium ovale curtisi and Plasmodium ovale wallikeri malaria.
Wenqiao He et al. medRxiv 2023 11

Detection of Anopheles stephensi Mosquitoes by Molecular Surveillance, Kenya.
Eric O Ochomo et al. Emerg Infect Dis 2023 11 (12)

Strain of Multidrug-Resistant Salmonella Newport Remains Linked to Travel to Mexico and U.S. Beef Products - United States, 2021-2022.
Laura Ford et al. MMWR Morb Mortal Wkly Rep 2023 11 (45) 1225-1229

Investigation of an international water polo tournament in Czechia as a potential source for early introduction of the SARS-CoV-2 Omicron variant into Belgium, Switzerland and Germany, November 2021.
Christoph Rudin et al. Euro Surveill 2023 11 (45)

Epidemiological characteristics of HIV transmission in southeastern China from 2015 to 2020 based on HIV molecular network.
Zhenghua Wang et al. Front Public Health 2023 11 1225883

Molecular epidemiology of HIV-1 among adult female sex workers at the Guatemala-Mexico border.
Olivia Springfield et al. Glob Public Health 2023 11 (1) 2278873

Identification of the flavivirus conserved residues in the envelope protein hinge region for the rational design of a candidate West Nile live-attenuated vaccine.
Bailey E Maloney et al. NPJ Vaccines 2023 11 (1) 172

HLA-DQB1*06 and Select Neighboring HLA Variants Predict Chlamydia Reinfection Risk.
Kanupriya Gupta et al. Int J Mol Sci 2023 11 (21)

Genetic variants associated with hantavirus infection in a reservoir host are related to regulation of inflammation and immune surveillance.
Anna A Pérez-Umphrey et al. Infect Genet Evol 2023 11 105525

Co-evolution of immunity and seasonal influenza viruses.
Alvin X Han et al. Nat Rev Microbiol 2023 8 (12) 805-817

In silico prediction of interaction between Nipah virus attachment glycoprotein and host cell receptors Ephrin-B2 and Ephrin-B3 in domestic and peridomestic mammals.
Ananya Ferdous Hoque et al. Infect Genet Evol 2023 11 105516

T-Cell Exhaustion in HIV-1/Hepatitis C Virus Coinfection Is Reduced After Successful Treatment of Chronic Hepatitis C.
Kamila Caraballo Cortés et al. Open Forum Infect Dis 2023 11 (11) ofad514

The Bern Birth Cohort (BeBiCo) to study the development of the infant intestinal microbiota in a high-resource setting in Switzerland: rationale, design, and methods.
Luca Cecchini et al. BMC Pediatr 2023 11 (1) 560