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Pathogen Genomics and Health Database|Home|PHGKB

Pathogen Advanced Molecular Detection Database


Last data update: Jan 21, 2021. (Total: 16786 Documents since 2015)
       dataset       CDC Author Only

This Week's New Publications

Flu vaccine roadmap aims to promote game-changers, equity
Paulsen SK. CIDRAP, Jan 19, 2021.
US needs national COVID 'smart testing' strategy, APHL says
McLemon LM. CIDRAP, Jan 19, 2020.
Pivotal Year for Preprints
Burke L. Inside Higher Ed, Jan 20, 2021.
SARS-CoV-2 Genomic Surveillance in Costa Rica: Evidence of a Divergent Population and an Increased Detection of a Spike T1117I Mutation
Molina JA, et al. bioRxiv, Jan 19, 2021.
Distinct Patterns of Emergence of SARS-CoV-2 Spike Variants including N501Y in Clinical Samples in Columbus Ohio
Tu H, et al. Jan 19, 2021.
SARS-CoV-2 Vaccines: Much Accomplished, Much to Learn.
Connors Mark et al. Annals of internal medicine 2021 Jan
The world needs a single naming system for coronavirus variants
(editorial) Nature, Jan 19, 2021.
Characterization and Source Investigation of Multidrug-Resistant Salmonella Anatum from a Sustained Outbreak, Taiwan.
Feng Ye et al. Emerging infectious diseases 2020 Dec (12) 2951-2955 Brand
Using phylogenetic surveillance and epidemiological data to understand the HIV-1 transmission dynamics in French Guiana.
Arantes Ighor et al. AIDS (London, England) 2021 Jan
SARS-CoV-2 Genomic Variation in Space and Time in Hospitalized Patients in Philadelphia.
Everett John et al. mBio 2021 Jan (1)
Molecular Epidemiological Analysis of the Origin and Transmission Dynamics of the HIV-1 CRF01_AE Sub-Epidemic in Bulgaria.
Alexiev Ivailo et al. Viruses 2021 Jan (1) Brand
Suitcase Lab for Rapid Detection of SARS-CoV-2 Based on Recombinase Polymerase Amplification Assay.
El Wahed Ahmed Abd et al. Analytical chemistry 2021 Jan
Alarming COVID variants show vital role of genomic surveillance
Cyranoski D. Nature, Jan 15, 2021.
Is precision medicine relevant in the age of COVID-19?
Zhou Amy et al. Genetics in medicine : official journal of the American College of Medical Genetics 2021 Jan
The lethal triad: SARS-CoV-2 Spike, ACE2 and TMPRSS2. Mutations in host and pathogen may affect the course of pandemic
Calcagnile M, et al. medRxiv, Jan 14, 2021.
Emergence of SARS-CoV-2 B.1.1.7 Lineage - United States, December 29, 2020-January 12, 2021
Galloway SE, et al. MMWR, Jan 13, 2021.
Emergence and Evolution of a Prevalent New SARS-CoV-2 Variant in the United States
Pater AA, et al. bioRxiv, Jan 13, 2021.
High throughput wastewater SARS-CoV-2 detection enables forecasting of community infection dynamics in San Diego county
Karthikeyan S, et al. medRxiv, Jan 14, 2021.
mRNA vaccine-elicited antibodies to SARS-CoV-2 and circulating variants
Wang Z, et al. bioRxiv, Jan 19, 2020.
Emergence of a novel SARS-CoV-2 strain in Southern California, USA
Zhang W, et al. medRxiv, Jan 20, 2021.

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This Week's CDC Authored Publications

Performance of the BinaxNOW COVID-19 Antigen Card test relative to the SARS-CoV-2 real-time reverse transcriptase polymerase chain reaction assay among symptomatic and asymptomatic healthcare employees External Web Site Icon
James AE, et al. Infect Control Hosp Epidemiol 2021 Jan 25;1-15. Brand Brand
Next Generation Sequencing to Diagnose Primary Immunodeficiency
(blog post) Kantipuly A, Green RF. Office of Genomics and Precision Health, CDC. Jan 22, 2021. Brand
Molecular Epidemiological Analysis of the Origin and Transmission Dynamics of the HIV-1 CRF01_AE Sub-Epidemic in Bulgaria. External Web Site Icon
Alexiev Ivailo et al. Viruses 2021 Jan (1) Brand
Bats are key hosts in the radiation of mammal-associated Bartonella bacteria. External Web Site Icon
McKee Clifton D et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2021 Jan 104719 Brand
Complete Genome Sequence of Francisella sp. Strain LA11-2445 (FDC406), a Novel Francisella Species Isolated from a Human Skin Lesion. External Web Site Icon
Öhrman Caroline et al. Microbiology resource announcements 2021 Jan (2) Brand

Top 5 Most Viewed

Moderna believes it could update its coronavirus vaccine without a big new trial
Regalado A. MIT Tech Rev, Jan 13, 2021.
(1033 reads)
Just How Much More Transmissible Is the New Coronavirus Variant?
Walker M. Medpage Today, Jan 2, 2021.
(1011 reads)
Nosocomial transmission and outbreaks of coronavirus disease 2019: the need to protect both patients and healthcare workers.
Abbas Mohamed et al. Antimicrobial resistance and infection control 2021 01 (1) 7 Brand

(1004 reads)
You're Infected With the Coronavirus. But How Infected?
Mandavilli A. New York Times, Dec 29, 2020.
(922 reads)
The Oldest Virus Ever Sequenced Comes From a 7,000-Year-Old Tooth
Zhang S. Atlantic, May 9, 2018.
(787 reads)

About

This database includes published scientific literature, popular press articles, tools, and databases on the emerging role of pathogen genomics and host-pathogen interactions in infectious disease control and prevention. It includes information on methods, evolution and pathogenicity, detection and diagnosis, outbreaks, epidemiology and transmission, antimicrobials, and vaccines and host-pathogen interactions. The database contains items from all previous weekly editions of Advanced Molecular Detection Clips, as well as from the current edition. Clips are selected weekly from a variety of sources, including PubMed, journal tables of contents, and online media. View Data Selection Criteria. See the current edition.

Content Statistics

  • Total Publications: 16786
  • Total CDC-Authored Publications: 1513
  • Total Categories: 9
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