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Pathogen Genomics and Health Database|Home|PHGKB

Pathogen Advanced Molecular Detection Database


Last data update: Aug 4, 2022. (Total: 22683 Documents since 2015)
       dataset       CDC Author Only

This Week's New Publications

Animal Reservoirs—Where the Next SARS-CoV-2 Variant Could Arise
Madhusoodanan J. JAMA, Aug 3, 2022.
An analysis of 45 large-scale wastewater sites in England to estimate SARS-CoV-2 community prevalence.
Morvan Mario et al. Nature communications 2022 7 (1) 4313
PanExplorer: A web-based tool for exploratory analysis and visualization of bacterial pan-genomes.
Dereeper Alexis et al. Bioinformatics (Oxford, England) 2022 8
Namco: a microbiome explorer.
Dietrich Alexander et al. Microbial genomics 2022 8 (8)
Genomic epidemiology of the first two waves of SARS-CoV-2 in Canada.
McLaughlin Angela et al. eLife 2022 8
Detection of SARS-CoV-2 in exhaled air using non-invasive embedded strips in masks.
Gallichotte Emily N et al. American journal of infection control 2022 7 (8) 890-897
Temporal dynamics of SARS-CoV-2 genome and detection of variants of concern in wastewater influent from two metropolitan areas in Arkansas.
Silva Camila S et al. The Science of the total environment 2022 8 157546
Molecular characterisation of Neisseria gonorrhoeae associated with disseminated gonococcal infections in Queensland, Australia: a retrospective surveillance study.
Guglielmino Christine J D et al. BMJ open 2022 8 (8) e061040
Trafficked Malayan pangolins contain viral pathogens of humans.
Shi Wenqiang et al. Nature microbiology 2022 8
A tale of two plasmids: contributions of plasmid associated phenotypes to epidemiological success among Shigella.
Malaka De Silva P et al. Proceedings. Biological sciences 2022 8 (1980) 20220581
Genomic epidemiology of seasonal influenza circulation in China during prolonged border closure from 2020 to 2021.
Xie Ruopeng et al. Virus evolution 2022 8 (2) veac062
Metabolic control by the microbiome.
Cox Timothy O et al. Genome medicine 2022 7 (1) 80
Development, testing and validation of a SARS-CoV-2 multiplex panel for detection of the five major variants of concern on a portable PCR platform
Stanhope BJ, et al. medRxiv, Aug 2, 2022.
Heart disease after COVID: what the data say
Sidik SM. Nature, Aug 2, 2022.
SARS-ANI: a global open access dataset of reported SARS-CoV-2 events in animals.
Nerpel Afra et al. Scientific data 2022 7 (1) 438
The United States COVID-19 Forecast Hub dataset.
Cramer Estee Y et al. Scientific data 2022 8 (1) 462 Brand

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This Week's CDC Authored Publications

The United States COVID-19 Forecast Hub dataset. External Web Site Icon
Cramer Estee Y et al. Scientific data 2022 8 (1) 462 Brand

Top 5 Most with Highest Altmetric Score

The proximal origin of SARS-CoV-2.
Andersen Kristian G et al. Nature medicine 2020 04 (4) 450-452
Safety and Efficacy of the BNT162b2 mRNA Covid-19 Vaccine.
Polack Fernando P et al. The New England journal of medicine 2020 Dec
Outbreak of SARS-CoV-2 Infections, Including COVID-19 Vaccine Breakthrough Infections, Associated with Large Public Gatherings - Barnstable County, Massachusetts, July 2021.
Brown Catherine M et al. MMWR. Morbidity and mortality weekly report 2021 8 (31) 1059-1062 Brand Brand
Effectiveness of Covid-19 Vaccines against the B.1.617.2 (Delta) Variant.
Lopez Bernal Jamie et al. The New England journal of medicine 2021 7 (7) 585-594
A SARS-like cluster of circulating bat coronaviruses shows potential for human emergence.
Menachery Vineet D et al. Nature medicine 2015 Nov

About

This database includes published scientific literature, popular press articles, tools, and databases on the emerging role of pathogen genomics and host-pathogen interactions in infectious disease control and prevention. It includes information on methods, evolution and pathogenicity, detection and diagnosis, outbreaks, epidemiology and transmission, antimicrobials, and vaccines and host-pathogen interactions. The database contains items from all previous weekly editions of Advanced Molecular Detection Clips, as well as from the current edition. Clips are selected weekly from a variety of sources, including PubMed, journal tables of contents, and online media. View Data Selection Criteria. See the current edition.

Content Statistics

  • Total Publications: 22683
  • Total CDC-Authored Publications: 1998
  • Total Categories: 11
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