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Pathogen Genomics and Health Database|Home|PHGKB

Pathogen Advanced Molecular Detection Database


Last data update: Aug 29, 2019. (Total: 11650 Documents since 2015)
       dataset       CDC Author Only

This Week's New Publications

Sequenceserver: a modern graphical user interface for custom BLAST databases.
Priyam Anurag et al. Molecular biology and evolution 2019 Aug
Do Fungi Play a Role in C. Diff Infection?
Walker M. MedPage Today, Aug 28, 2019.
Genomic determinants of speciation and spread of the Mycobacterium tuberculosis complex.
Chiner-Oms Á et al. Science advances 2019 Jun (6) eaaw3307
Whole Genome Sequencing to Identify Drivers of Carbapenem-Resistant Klebsiella pneumoniae Transmission Within and Between Regional Long-Term Acute Care Hospitals.
Han Jennifer H et al. Antimicrobial agents and chemotherapy 2019 Aug Brand
Cryptosporidium Genotyping for Epidemiology Tracking.
Roellig Dawn M et al. Methods in molecular biology (Clifton, N.J.) 2020 103-116 Brand Brand
Molecular Evolution of Extensively Drug-Resistant (XDR) Pseudomonas aeruginosa Strains From Patients and Hospital Environment in a Prolonged Outbreak.
Buhl Michael et al. Frontiers in microbiology 2019 1742
Molecular and Clinical Comparison of Enterovirus D68 Outbreaks among Hospitalized Children, Ohio, USA, 2014 and 2018.
Wang Huanyu et al. Emerging infectious diseases 2019 Nov (11)
Revisiting the genetic diversity of emerging hantaviruses circulating in Europe using a pan-viral resequencing microarray.
Filippone Claudia et al. Scientific reports 2019 Aug (1) 12404
Development and Validation of a Reference Data Set for Assigning Staphylococcus Species Based on Next-Generation Sequencing of the 16S-23S rRNA Region.
Kosecka-Strojek Maja et al. Frontiers in cellular and infection microbiology 2019 278
Ultrasensitive Detection of Clostridioides difficile Toxins in Stool Using Single Molecule Counting Technology: Comparison with CCCNA Free Toxin Detection.
Hansen Glen et al. Journal of clinical microbiology 2019 Aug
Molecular profiling of tissue biopsies reveals unique signatures associated with streptococcal necrotizing soft tissue infections.
Thänert Robert et al. Nature communications 2019 Aug (1) 3846
Comparative genomic analysis between newly sequenced Brucella abortus vaccine strain A19 and another Brucella abortus vaccine S19.
Wang Shuyi et al. Genomics 2019 Aug
Linked seasonal outbreaks of Salmonella Typhimurium among passerine birds, domestic cats and humans, Sweden, 2009 to 2016.
Söderlund Robert et al. Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin 2019 Aug (34)
Increasing incubation periods during a prolonged monophasic Salmonella Typhimurium outbreak with environmental contamination of a commercial kitchen at Oslo Airport, Norway, 2017.
Siira Lotta et al. Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin 2019 Aug (34) Brand
Clinical Resistome Screening of 1,110 Escherichia coli Isolates Efficiently Recovers Diagnostically Relevant Antibiotic Resistance Biomarkers and Potential Novel Resistance Mechanisms.
Volz Carsten et al. Frontiers in microbiology 2019 1671
SMRT sequencing revealed the diversity and characteristics of defective interfering RNAs in influenza A (H7N9) virus infection.
Lui Wing-Yu et al. Emerging microbes & infections 2019 (1) 662-674
An improved nucleic acid extraction method from dried blood spots for amplification of Plasmodium falciparum kelch13 for detection of artemisinin resistance.
Zainabadi Kayvan et al. Malaria journal 2019 Jun (1) 192
Protozoan persister-like cells and drug treatment failure.
Barrett Michael P et al. Nature reviews. Microbiology 2019 Aug

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This Week's CDC Authored Publications

Whole Genome Sequencing to Identify Drivers of Carbapenem-Resistant Klebsiella pneumoniae Transmission Within and Between Regional Long-Term Acute Care Hospitals. External Web Site Icon
Han Jennifer H et al. Antimicrobial agents and chemotherapy 2019 Aug Brand
Cryptosporidium Genotyping for Epidemiology Tracking. External Web Site Icon
Roellig Dawn M et al. Methods in molecular biology (Clifton, N.J.) 2020 103-116 Brand Brand
Multidrug-Resistant Salmonella I 4,[5],12:i:- and Salmonella Infantis Infections Linked to Whole Roasted Pigs from a Single Slaughter and Processing Facility. External Web Site Icon
Kawakami Vance et al. Journal of food protection 2019 Sep (9) 1615-1624 Brand Brand

Top 5 Most Viewed

The Oldest Virus Ever Sequenced Comes From a 7,000-Year-Old Tooth
Zhang S. Atlantic, May 9, 2018.
(259 reads)
Can Viruses in the Genome Cause Disease?
Zimmer K. The Scientist, Jan 1, 2019.
(254 reads)
The Recurring Dread of a Paralyzing Illness
Yong E. Atlantic, Dec 10, 2018.
(227 reads)
Amblyomma americanum (Acari: Ixodidae) Ticks Are Not Vectors of the Lyme Disease Agent, Borrelia burgdorferi (Spirocheatales: Spirochaetaceae): A Review of the Evidence.
Stromdahl Ellen Y et al. Journal of medical entomology 2018 05 (3) 501-514 Brand Brand

(219 reads)
What's Next for the Microbiome?
Handelsman J, Stulberg ER. White House Office of Science and Technology Policy, May 21, 2015.
(207 reads)

About

This database includes published scientific literature, popular press articles, tools, and databases on the emerging role of pathogen genomics and host-pathogen interactions in infectious disease control and prevention. It includes information on methods, evolution and pathogenicity, detection and diagnosis, outbreaks, epidemiology and transmission, antimicrobials, and vaccines and host-pathogen interactions. The database contains items from all previous weekly editions of Advanced Molecular Detection Clips, as well as from the current edition. Clips are selected weekly from a variety of sources, including PubMed, journal tables of contents, and online media. View Data Selection Criteria. See the current edition.

Content Statistics

  • Total Publications: 11650
  • Total CDC-Authored Publications: 1212
  • Total Categories: 8
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