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Pathogen Genomics and Health Database|Home|PHGKB

Pathogen Advanced Molecular Detection Database


Last data update: Apr 15, 2021. (Total: 17623 Documents since 2015)
       dataset       CDC Author Only

This Week's New Publications

The long-term genetic stability and individual specificity of the human gut microbiome.
Chen Lianmin et al. Cell 2021 4
Mendelian randomisation identifies alternative splicing of the FAS death receptor as a mediator of severe COVID-19.
Klaric Lucija et al. medRxiv : the preprint server for health sciences 2021 4
SARS-CoV-2 evolution in an immunocompromised host reveals shared neutralization escape mechanisms.
Clark Sarah A et al. Cell 2021 4
The evolving role of preprints in the dissemination of COVID-19 research and their impact on the science communication landscape.
Fraser Nicholas et al. PLoS biology 2021 4 (4) e3000959
Combining natural language processing and metabarcoding to reveal pathogen-environment associations.
Molik David C et al. PLoS neglected tropical diseases 2021 4 (4) e0008755
Lessons from applied large-scale pooling of 133,816 SARS-CoV-2 RT-PCR tests
Barak N, et al. Sci Transl Med, Apr 14, 2021. Brand
Using viral load and epidemic dynamics to optimize pooled testing in resource-constrained settings
Cleary B, et al. Sci Transl Med, Apr 14, 2021.
Imaging Enterobacterales infections in patients using pathogen-specific positron emission tomography
Ordonez AA, et al. Sci Transl Med, Apr 14, 2021.
Know Thine Enemy: Why Genetic Sequencing Is Key to Tracking COVID-19
Dance A. Medscape, Apr 14, 2021.
Emergence and clonal expansion of in vitro artemisinin-resistant Plasmodium falciparum kelch13 R561H mutant parasites in Rwanda.
Uwimana Aline et al. Nature medicine 2020 8 (10) 1602-1608
How to develop vaccines faster before the next pandemic
Piper K. Vox, Apr 14, 2021.
Multilevel proteomics reveals host perturbations by SARS-CoV-2 and SARS-CoV.
Stukalov Alexey et al. Nature 2021 4
Integrative approach identifies SLC6A20 and CXCR6 as putative causal genes for the COVID-19 GWAS signal in the 3p21.31 locus
Kasela S, et al. medRxiv, Apr 13, 2021.
Examining horizontal gene transfer in microbial communities.
Brito Ilana Lauren et al. Nature reviews. Microbiology 2021 4
Temporal landscape of human gut RNA and DNA virome in SARS-CoV-2 infection and severity
Zuo T, et al. Microbiome. 2021 Apr 14;9(1):91
Gut microbiota composition reflects disease severity and dysfunctional immune responses in patients with COVID-19.
Yeoh Yun Kit et al. Gut 2021 1 (4) 698-706
Through the gut, down the drain.
Beresford-Jones Benjamin S et al. Nature reviews. Microbiology 2021 4
As variants surge, efforts in a patchwork of surveillance have ramped up to detect them
Cox E, Portnoy J. Washington Post, Apr 11, 2021.

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This Week's CDC Authored Publications

Enhanced Throughput of the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Real-Time RT-PCR Panel by Assay Multiplexing and Specimen Pooling. External Web Site Icon
Lu Xiaoyan et al. Journal of virological methods 2021 4 114149 Brand
Detection of malaria parasites in samples from returning US travelers using the Alethia® Malaria Plus LAMP assay. External Web Site Icon
Ljolje Dragan et al. BMC research notes 2021 4 (1) 128 Brand
Under pressure: phenotypic divergence and convergence associated with microhabitat adaptations in Triatominae. External Web Site Icon
Abad-Franch Fernando et al. Parasites & vectors 2021 4 (1) 195 Brand

Top 5 Most Viewed

Moderna believes it could update its coronavirus vaccine without a big new trial
Regalado A. MIT Tech Rev, Jan 13, 2021.
(1100 reads)
Just How Much More Transmissible Is the New Coronavirus Variant?
Walker M. Medpage Today, Jan 2, 2021.
(1069 reads)
Nosocomial transmission and outbreaks of coronavirus disease 2019: the need to protect both patients and healthcare workers.
Abbas Mohamed et al. Antimicrobial resistance and infection control 2021 01 (1) 7 Brand

(1066 reads)
You're Infected With the Coronavirus. But How Infected?
Mandavilli A. New York Times, Dec 29, 2020.
(988 reads)
The Oldest Virus Ever Sequenced Comes From a 7,000-Year-Old Tooth
Zhang S. Atlantic, May 9, 2018.
(882 reads)

About

This database includes published scientific literature, popular press articles, tools, and databases on the emerging role of pathogen genomics and host-pathogen interactions in infectious disease control and prevention. It includes information on methods, evolution and pathogenicity, detection and diagnosis, outbreaks, epidemiology and transmission, antimicrobials, and vaccines and host-pathogen interactions. The database contains items from all previous weekly editions of Advanced Molecular Detection Clips, as well as from the current edition. Clips are selected weekly from a variety of sources, including PubMed, journal tables of contents, and online media. View Data Selection Criteria. See the current edition.

Content Statistics

  • Total Publications: 17623
  • Total CDC-Authored Publications: 1571
  • Total Categories: 9
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