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Advanced Molecular Detection Clips Database|Home|PHGKB

AMD Clips Database

Last data update: Nov 8, 2018. (Total: 10049 Documents since 2015)
      CDC Author Only

This Week's New Publications

Genomic Surveillance of Enterococcus faecium Reveals Limited Sharing of Strains and Resistance Genes between Livestock and Humans in the United Kingdom.
Gouliouris Theodore et al. mBio 2018 Nov (6)
Estimating effects of HIV sequencing data completeness on transmission network patterns and detection of growing HIV transmission clusters.
Dasgupta Sharoda et al. AIDS research and human retroviruses 2018 Nov Brand
An outbreak of Shigella boydii serotype 20 in January 2015 amongst United Kingdom healthcare workers involved in the Ebola response in Sierra Leone.
Todkill Daniel et al. Journal of medical microbiology 2018 Nov (11) 1596-1600 Brand
The Microbiome and Tuberculosis: Early Evidence for Cross Talk.
Namasivayam Sivaranjani et al. mBio 2018 Sep (5)
Two methods for mapping and visualizing associated data on phylogeny using ggtree.
Yu Guangchuang et al. Molecular biology and evolution 2018 Oct
Designing Studies Acceptable for Abstraction and Inclusion in Evidence-Based Laboratory Practice Guidelines.
Saubolle Michael A et al. Journal of clinical microbiology 2018 Oct
PCR detection of respiratory pathogens in asymptomatic and symptomatic adults.
Sundell Nicklas et al. Journal of clinical microbiology 2018 Oct
Evaluation of Whole-Genome Sequencing for Identification and Typing of Vibrio cholerae.
Greig David R et al. Journal of clinical microbiology 2018 Nov (11)
Real-Time Analysis and Visualization of Pathogen Sequence Data.
Neher Richard A et al. Journal of clinical microbiology 2018 Nov (11)
Genotyping and Quantifying Lyme Pathogen Strains by Deep Sequencing of the Outer Surface Protein C ( ospC ) Locus.
Di Lia et al. Journal of clinical microbiology 2018 Nov (11)
Whole-Genome Sequencing and Bioinformatic Analysis of Isolates from Foodborne Illness Outbreaks of Campylobacter jejuni and Salmonella enterica.
Oakeson Kelly F et al. Journal of clinical microbiology 2018 Nov (11)
Comparison of Six Sample-to-Answer Influenza A/B and Respiratory Syncytial Virus Nucleic Acid Amplification Assays Using Respiratory Specimens from Children.
Banerjee Dithi et al. Journal of clinical microbiology 2018 Nov (11)
Identifying Mixed Mycobacterium tuberculosis Infection and Laboratory Cross-Contamination during Mycobacterial Sequencing Programs.
Wyllie David H et al. Journal of clinical microbiology 2018 Nov (11)
The complex association of virus- and host-related factors with HCC rate following HCV clearance.
Akuta Norio et al. Journal of clinical microbiology 2018 Oct
Circulation of Distinct Treponema pallidum Strains in Individuals with Heterosexual Orientation and Men Who Have Sex with Men (MSM).
Kojima Yoko et al. Journal of clinical microbiology 2018 Oct
Genome-based prediction of bacterial antibiotic resistance.
Su Michelle et al. Journal of clinical microbiology 2018 Oct
Distinct microbes, metabolites, and ecologies define the microbiome in deficient and proficient mismatch repair colorectal cancers.
Hale Vanessa L et al. Genome medicine 2018 Oct (1) 78
Survey of Ebola Viruses in Frugivorous and Insectivorous Bats in Guinea, Cameroon, and the Democratic Republic of the Congo, 2015-2017.
De Nys Helene M et al. Emerging infectious diseases 2018 Dec (12)
Survey of diagnostic testing for respiratory syncytial virus (RSV) in adults: Infectious disease physician practices and implications for burden estimates.
Allen Kristen E et al. Diagnostic microbiology and infectious disease 2018 Nov (3) 206-209 Brand Brand
Neisseria gonorrhoeae — Rising Infection Rates, Dwindling Treatment Options
Blank S, Daskalakis DC. New Engl J Med, Nov 8, 2018.
Zika Virus and the Safety of Blood Supply in Brazil: A Retrospective Epidemiological Evaluation.
Benites Bruno Deltreggia et al. The American journal of tropical medicine and hygiene 2018 Nov Brand
Emerging implications of policies on malaria treatment: genetic changes in the Pfmdr-1 gene affecting susceptibility to artemether-lumefantrine and artesunate-amodiaquine in Africa.
Okell Lucy C et al. BMJ global health 2018 (5) e000999 Brand

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This Week's CDC Authored Publications

Translocation of a Stray Cat Infected with Rabies from North Carolina to a Terrestrial Rabies-Free County in Ohio, 2017. External Web Site Icon
Singh Amber J et al. MMWR. Morbidity and mortality weekly report 2018 Oct (42) 1174-1177 Brand Brand
Estimating effects of HIV sequencing data completeness on transmission network patterns and detection of growing HIV transmission clusters. External Web Site Icon
Dasgupta Sharoda et al. AIDS research and human retroviruses 2018 Nov Brand
Survey of diagnostic testing for respiratory syncytial virus (RSV) in adults: Infectious disease physician practices and implications for burden estimates. External Web Site Icon
Allen Kristen E et al. Diagnostic microbiology and infectious disease 2018 Nov (3) 206-209 Brand Brand
Multiplex TaqMan qPCR assay for specific identification of encapsulated Trichinella species prevalent in North America. External Web Site Icon
Almeida Marcos de et al. Memorias do Instituto Oswaldo Cruz 2018 Oct (11) e180305 Brand
Gastrointestinal microbiota disruption and risk of colonization with carbapenem-resistant Pseudomonas aeruginosa in ICU patients. External Web Site Icon
Pettigrew Melinda M et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2018 Nov Brand
PacBio Genome Sequences of Escherichia coli Serotype O157:H7, Diffusely Adherent E. coli , and Salmonella enterica Strains, All Carrying Plasmids with an mcr-1 Resistance Gene. External Web Site Icon
Lindsey Rebecca L et al. Microbiology resource announcements 2018 (14) Brand
Evaluation of the impact of a sequencing assay for detection of drug resistance on the clinical management of tuberculosis. External Web Site Icon
Lowenthal Phil et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2018 Nov Brand Brand

Top 5 Most Viewed

What's Next for the Microbiome?
Handelsman J, Stulberg ER. White House Office of Science and Technology Policy, May 21, 2015.
(93 reads)
Deep learning for biology
Webb S. Nature, Feb 20, 2017.
(76 reads)
Pandemics: spend on surveillance, not prediction
Holmes EC, et al. Nature, Jun 7, 2018.
(63 reads)
Expanding our view of the microbiome
(blog post) Collins F, NIH Director's blog, Sep 26, 2017.
(46 reads)
Next-generation Sequence-analysis Toolkit (NeST): A standardized bioinformatics framework for analyzing Single Nucleotide Polymorphisms in next-generation sequencing data
Ravishankar S, et al. bioRxiv, May 16, 2018. Brand
(46 reads)

About

This database includes published scientific literature, popular press articles, tools, and databases on the emerging role of pathogen genomics and host-pathogen interactions in infectious disease control and prevention. It includes information on methods, evolution and pathogenicity, detection and diagnosis, outbreaks, epidemiology and transmission, antimicrobials, and vaccines and host-pathogen interactions. The database contains items from all previous weekly editions of Advanced Molecular Detection Clips, as well as from the current edition. Clips are selected weekly from a variety of sources, including PubMed, journal tables of contents, and online media. View Data Selection Criteria. See the current edition.

Content Statistics

  • Total AMD Publications: 10049
  • Total AMD CDC-Authored Publications: 1028
  • Total Categories: 8
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