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Pathogen Genomics and Health Database|Home|PHGKB

Pathogen Advanced Molecular Detection Database


Last data update: May 9, 2019. (Total: 10991 Documents since 2015)
       dataset       CDC Author Only

This Week's New Publications

How to communicate uncertainty about facts, numbers, science?
(Twitter thread) Spiegelhalter D. May 8, 2019.
Refining wet lab experiments with in silico searches: A rational quest for diagnostic peptides in visceral leishmaniasis.
Bremer Hinckel Bruno Cesar et al. PLoS neglected tropical diseases 2019 May (5) e0007353
BacTag - a pipeline for fast and accurate gene and allele typing in bacterial sequencing data based on database preprocessing.
Khachatryan Lusine et al. BMC genomics 2019 May (1) 338
Stopping the Gaps in Epidemic Preparedness.
Farrar Jeremy J et al. The New England journal of medicine 2019 May (19) 1788-1789 Brand
Homozygosity for TYK2 P1104A underlies tuberculosis in about 1% of patients in a cohort of European ancestry
Kerner G, et al. Proc Nat Acad Sci, May 8, 2019.
How genetically engineered viruses — and a rotten eggplant — prolonged a teenager’s life
Boodman E. STAT, May 8, 2019.
Alzheimer's Disease Microbiome Is Associated with Dysregulation of the Anti-Inflammatory P-Glycoprotein Pathway.
Haran John P et al. mBio 2019 May (3)
Identification of Novel Mobilized Colistin Resistance Gene mcr-9 in a Multidrug-Resistant, Colistin-Susceptible Salmonella enterica Serotype Typhimurium Isolate.
Carroll Laura M et al. mBio 2019 May (3)
Remarkable genome stability among emm1 group A Streptococcus in Belgium over 19 years.
Coppens Jasmine et al. Genome biology and evolution 2019 May
The Expectations and Challenges of Wildlife Disease Research in the Era of Genomics: Forecasting with a Horizon Scan-like Exercise.
Fitak Robert R et al. The Journal of heredity 2019 May (3) 261-274 Brand
Genetic diversity and delineation of Salmonella Agona outbreak strains by next generation sequencing, Bavaria, Germany, 1993 to 2018.
Dangel Alexandra et al. Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin 2019 May (18)
Molecular identification of the source of an uncommon tularaemia outbreak, Germany, autumn 2016.
Jacob Daniela et al. Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin 2019 May (18)
An Overview of PulseNet USA Databases.
Tolar Beth et al. Foodborne pathogens and disease 2019 May Brand Brand
A computational method for the identification of Dengue, Zika and Chikungunya virus species and genotypes.
Fonseca Vagner et al. PLoS neglected tropical diseases 2019 May (5) e0007231
Engineered bacteriophages for treatment of a patient with a disseminated drug-resistant Mycobacterium abscessus
Dedrick RM, et al. Nat Med, May 8, 2019.
AutoMLST: an automated web server for generating multi-locus species trees highlighting natural product potential.
Alanjary Mohammad et al. Nucleic acids research 2019 Apr
Association of Oral Human Papillomavirus DNA Persistence With Cancer Progression After Primary Treatment for Oral Cavity and Oropharyngeal Squamous Cell Carcinoma.
Fakhry Carole et al. JAMA oncology 2019 May

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This Week's CDC Authored Publications

An Overview of PulseNet USA Databases. External Web Site Icon
Tolar Beth et al. Foodborne pathogens and disease 2019 May Brand Brand
Using Earth Mover’s Distance for Viral Outbreak Investigations External Web Site Icon
Melnyk A, et al. bioRxiv, May 6, 2019. Brand

Top 5 Most Viewed

What's Next for the Microbiome?
Handelsman J, Stulberg ER. White House Office of Science and Technology Policy, May 21, 2015.
(171 reads)
The Recurring Dread of a Paralyzing Illness
Yong E. Atlantic, Dec 10, 2018.
(164 reads)
Deep learning for biology
Webb S. Nature, Feb 20, 2017.
(148 reads)
Pandemics: spend on surveillance, not prediction
Holmes EC, et al. Nature, Jun 7, 2018.
(148 reads)
Can Viruses in the Genome Cause Disease?
Zimmer K. The Scientist, Jan 1, 2019.
(141 reads)

About

This database includes published scientific literature, popular press articles, tools, and databases on the emerging role of pathogen genomics and host-pathogen interactions in infectious disease control and prevention. It includes information on methods, evolution and pathogenicity, detection and diagnosis, outbreaks, epidemiology and transmission, antimicrobials, and vaccines and host-pathogen interactions. The database contains items from all previous weekly editions of Advanced Molecular Detection Clips, as well as from the current edition. Clips are selected weekly from a variety of sources, including PubMed, journal tables of contents, and online media. View Data Selection Criteria. See the current edition.

Content Statistics

  • Total Publications: 10991
  • Total CDC-Authored Publications: 1140
  • Total Categories: 8
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