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Pathogen Genomics and Health Database|Home|PHGKB

Pathogen Advanced Molecular Detection Database


Last data update: Jan 26, 2023. (Total: 23888 Documents since 2015)
       dataset       CDC Author Only

This Week's New Publications

The COVID vaccine success story as a springboard for future research
Van Beusekom M. CIDRAP, Jan 24, 2023.
Resolving colistin resistance and heteroresistance in Enterobacter species.
Swapnil Prakash Doijad et al. Nature communications 2023 1 (1) 140
Estimating the transmission dynamics of SARS-CoV-2 Omicron BF.7 in Beijing after the adjustment of zero-COVID policy in November - December 2022.
Kathy Leung et al. Nature medicine 2023 1
The case for including microbial sequences in the electronic health record
Sintchenko V, Coiera E. Jan 16, 2023.
Highly pathogenic avian influenza A(H5N1) virus infection in farmed minks, Spain, October 2022.
Montserrat Agüero et al. Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin 2023 1 (3)
The next worrisome coronavirus variant could come from China — will it get detected?
Lewis D. Nature, Jan 24, 2023.
Bird flu outbreak in mink sparks concern about spread in people
Sidik SM. Nature, Jan 24, 2023.
Genotypic investigation of a rotavirus cluster at a quaternary-care pediatric hospital.
Eimear M Kitt et al. Infection control and hospital epidemiology 2023 1 1-3 Brand
Habitat connectivity and host relatedness influence virus spread across an urbanising landscape in a fragmentation-sensitive carnivore.
Christopher P Kozakiewicz et al. Virus evolution 2023 1 (1) veac122 Brand
HLA-A*01:01 allele diminishing in COVID-19 patients population associated with non-structural epitope abundance in CD8+ T-cell repertoire.
Maxim Shkurnikov et al. PeerJ 2023 1 e14707
Positive-strand RNA viruses-a Keystone Symposia report.
Jennifer Cable et al. Annals of the New York Academy of Sciences 2023 1
Baseline prevalence of molecular marker of sulfadoxine/pyrimethamine resistance in Ebonyi and Osun states, Nigeria: amplicon deep sequencing of dhps-540.
Adeola Y Olukosi et al. The Journal of antimicrobial chemotherapy 2023 1
Integrated surveillance of extended-spectrum beta-lactamase (ESBL)-producing Salmonella and Escherichia coli from humans and animal species raised for human consumption in Canada from 2012 to 2017.
Courtney A Primeau et al. Epidemiology and infection 2023 1 e14 Brand
Molecular epidemiology and genomic insights into the transmission of carbapenem-resistant NDM-producing Escherichia coli.
Juan Xu et al. Computational and structural biotechnology journal 2023 1 847-855
KaruBioNet: a network and discussion group for a better collaboration and structuring of bioinformatics in Guadeloupe (French West Indies).
David Couvin et al. Bioinformatics advances 2023 1 (1) vbac010 Brand
CATHAI: cluster analysis tool for healthcare-associated infections.
Thom Cuddihy et al. Bioinformatics advances 2023 1 (1) vbac040
Genetic characterization of Staphylococcus aureus isolated from Norway rats in Boston, Massachusetts.
Gracen R Gerbig et al. Veterinary medicine and science 2022 12 (1) 272-281
Genetic Characteristics of Measles Viruses Isolated in Taiwan between 2015 and 2020.
Wen-Yueh Cheng et al. Viruses 2023 1 (1)
Detection and Molecular Characterization of the SARS-CoV-2 Delta Variant and the Specific Immune Response in Companion Animals in Switzerland.
Evelyn Kuhlmeier et al. Viruses 2023 1 (1)
Severe mpox (formerly monkeypox) disease in five patients after recent vaccination with MVA-BN vaccine, Belgium, July to October 2022.
Nicole Berens-Riha et al. Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin 2023 1 (48) Brand
Whole-genome sequencing of SARS-CoV-2 isolates from symptomatic and asymptomatic individuals in Tanzania.
Shabani Ramadhani Mziray et al. Frontiers in medicine 2023 1 1034682
Surveillance, Isolation and Genomic Characterization of Pteropine orthoreovirus of Probable Bat Origin Among Patients with Acute Respiratory Infection in Malaysia.
Kok Keng Tee et al. Journal of medical virology 2023 1
Combined Phylogeographic Analyses and Epidemiologic Contact Tracing to Characterize Atypically Pathogenic Avian Influenza (H3N1) Epidemic, Belgium, 2019.
Steven Van Borm et al. Emerging infectious diseases 2023 1 (2) 351-359
Hepatitis C and HIV detection by blood RNA-sequencing in cohort of smokers.
Jarrett D Morrow et al. Scientific reports 2023 1 (1) 1357
Genetic Variation of Taenia Saginata Cyst Isolates from Iraq Based on Mitochondrial COX1 Sequences.
A A Mohammed et al. Helminthologia 2023 1 (3) 226-232

more

This Week's CDC Authored Publications

Genotypic investigation of a rotavirus cluster at a quaternary-care pediatric hospital. External Web Site Icon
Eimear M Kitt et al. Infection control and hospital epidemiology 2023 1 1-3 Brand
Habitat connectivity and host relatedness influence virus spread across an urbanising landscape in a fragmentation-sensitive carnivore. External Web Site Icon
Christopher P Kozakiewicz et al. Virus evolution 2023 1 (1) veac122 Brand
Increased Multidrug-Resistant Salmonella enterica I Serotype 4,[5],12:i:- Infections Associated with Pork, United States, 2009-2018. External Web Site Icon
Ian D Plumb et al. Emerging infectious diseases 2023 1 (2) Brand Brand
Relapsing Fever Caused by Borrelia lonestari after Tick Bite in Alabama, USA. External Web Site Icon
Laia J Vazquez Guillamet et al. Emerging infectious diseases 2023 1 (2) 441-444 Brand Brand
Draft Genome Sequences of 20 Clostridium botulinum Type A Isolates from Foodborne Botulism Outbreaks. External Web Site Icon
Halpin Jessica L et al. Microbiology resource announcements 2023 1 e0086822 Brand
Genomic epidemiology of SARS-CoV-2 in Cambodia, January 2020 to February 2021. External Web Site Icon
Yvonne C F Su et al. Virus evolution 2023 1 (1) veac121 Brand
Gut Microbiome Composition and Metabolic Capacity Differ by FUT2 Secretor Status in Exclusively Breastfed Infants. External Web Site Icon
Alexander W Thorman et al. Nutrients 2023 1 (2) Brand
One Health Investigation of SARS-CoV-2 in People and Animals on Multiple Mink Farms in Utah. External Web Site Icon
Caitlin M Cossaboom et al. Viruses 2023 1 (1) Brand
Emerging integrase strand transfer inhibitor drug resistance mutations among children and adults on ART in Tanzania: findings from a national representative HIV drug resistance survey. External Web Site Icon
Doreen Kamori et al. The Journal of antimicrobial chemotherapy 2023 1 Brand
Probable vertical transmission of Alpha variant of concern (B.1.1.7) with evidence of SARS-CoV-2 infection in the syncytiotrophoblast, a case report. External Web Site Icon
Hannah A Bullock et al. Frontiers in medicine 2023 1 1099408 Brand

Top 5 Most with Highest Altmetric Score

The proximal origin of SARS-CoV-2.
Andersen Kristian G et al. Nature medicine 2020 04 (4) 450-452
Safety and Efficacy of the BNT162b2 mRNA Covid-19 Vaccine.
Polack Fernando P et al. The New England journal of medicine 2020 Dec
Outbreak of SARS-CoV-2 Infections, Including COVID-19 Vaccine Breakthrough Infections, Associated with Large Public Gatherings - Barnstable County, Massachusetts, July 2021.
Brown Catherine M et al. MMWR. Morbidity and mortality weekly report 2021 8 (31) 1059-1062 Brand Brand
Effectiveness of Covid-19 Vaccines against the B.1.617.2 (Delta) Variant.
Lopez Bernal Jamie et al. The New England journal of medicine 2021 7 (7) 585-594
A SARS-like cluster of circulating bat coronaviruses shows potential for human emergence.
Menachery Vineet D et al. Nature medicine 2015 Nov

About

This database includes published scientific literature, popular press articles, tools, and databases on the emerging role of pathogen genomics and host-pathogen interactions in infectious disease control and prevention. It includes information on methods, evolution and pathogenicity, detection and diagnosis, outbreaks, epidemiology and transmission, antimicrobials, and vaccines and host-pathogen interactions. The database contains items from all previous weekly editions of Advanced Molecular Detection Clips, as well as from the current edition. Clips are selected weekly from a variety of sources, including PubMed, journal tables of contents, and online media. View Data Selection Criteria. See the current edition.

Content Statistics

  • Total Publications: 23888
  • Total CDC-Authored Publications: 2088
  • Total Categories: 11
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