European data highlight resistance in zoonotic, indicator bacteria
Dall C. CIDRAP, Feb 29, 2024.
Global consortium plans coordinated human challenge studies in hunt for transmission-blocking coronavirus vaccines
(news release) CEPI, Mar 10, 2024.
SARS-CoV-2 RNA can persist in blood, tissue, may play role in long COVID, research suggests
Van Beusekom M. CIDRAP, Mar 8, 2024.
'Vampire Facials' at Spa Linked to HIV Infections
Kahn K. MedPage Today, Mar 7, 2024.
Introducing www.epidemic-em.org: A collection of online resources and training materials for strengthening use of Emergency Operations Centers for epidemic response.
James A Banaski et al. Disaster Med Public Health Prep 2024 2 1-16
Hunting emerging viruses through participatory community science.
Christine Marizzi et al. Nat Microbiol 2024 2 (3) 578-581
Redefining pandemic preparedness: Multidisciplinary insights from the CERP modelling workshop in infectious diseases, workshop report.
Marta C Nunes et al. Infect Dis Model 2024 3 (2) 501-518
Early and contemporary drivers of the HIV-1 group M pandemic.
Jude P Brennan-Calland et al. AIDS Rev 2024 3
Multi-platform whole genome sequencing for tuberculosis clinical and surveillance applications.
Joseph Thorpe et al. Sci Rep 2024 3 (1) 5201
Implementation of a high-throughput whole genome sequencing approach with the goal of maximizing efficiency and cost effectiveness to improve public health.
Michelle C Dickinson et al. Microbiol Spectr 2024 3 e0388523
Health Department: New York
Closing the gap: Oxford Nanopore Technologies R10 sequencing allows comparable results to Illumina sequencing for SNP-based outbreak investigation of bacterial pathogens.
Bert Bogaerts et al. J Clin Microbiol 2024 3 e0157623
Comparative analysis of IR-Biotyper, MLST, cgMLST, and WGS for clustering of vancomycin-resistant Enterococcus faecium in a neonatal intensive care unit.
Sunggyun Park et al. Microbiol Spectr 2024 3 e0411923
Gravity-perfused airway-on-a-chip optimized for quantitative BSL-3 studies of SARS-CoV-2 infection: barrier permeability, cytokine production, immunohistochemistry, and viral load assays.
Shannon L Faley et al. Lab Chip 2024 2 (6) 1794-1807
Genomic surveillance of SARS-CoV-2 using long-range PCR primers.
Sangam Kandel et al. Front Microbiol 2024 3 1272972
Identification and quantitation of multiple variants in RNA virus genomes.
Johnny Sena et al. Biol Methods Protoc 2024 2 (1) bpae004
Immunocapture of cell surface proteins embedded in HIV envelopes uncovers considerable virion genetic diversity associated with different source cell types.
Sarah Sabour et al. PLoS One 2024 2 (2) e0296891
Rickettsia species identified in adult, host-seeking Dermacentor occidentalis (Acari: Ixodidae) from Baja California, Mexico, and Oregon and Washington, United States.
Christopher D Paddock et al. J Med Entomol 2024 2
High diversity within and low but significant genetic differentiation among geographic and temporal populations of the global Streptococcus pneumoniae.
Jezreel Dalmieda et al. Can J Microbiol 2024 2
Adaptive Evolution of Pseudomonas aeruginosa in Human Airways Shows Phenotypic Convergence Despite Diverse Patterns of Genomic Changes.
Akbar Espaillat et al. Mol Biol Evol 2024 2 (2)
Expansion of Neisseria meningitidis Serogroup C Clonal Complex 10217 during Meningitis Outbreak, Burkina Faso, 2019.
Joann F Kekeisen-Chen et al. Emerg Infect Dis 2024 2 (3) 460-468
Endemic does not mean constant as SARS-CoV-2 continues to evolve.
Sarah P Otto et al. Evolution 2024 3
Swine influenza A virus infection dynamics and evolution in intensive pig production systems.
Paula Lagan et al. Virus Evol 2024 3 (1) veae017
Novel influenza A viruses in pigs with zoonotic potential, Chile.
Rodrigo Tapia et al. Microbiol Spectr 2024 3 e0218123
Two-step evolution of HIV-1 budding system leading to pandemic in the human population.
Yoriyuki Konno et al. Cell Rep 2024 1 (2) 113697
Do bed bugs transmit human viruses, or do humans spread bed bugs and their viruses? A worldwide survey of the bed bug RNA virosphere.
Hunter K Walt et al. Virus Res 2024 3 199349
Emergence of zoonotic sporotrichosis in Brazil: a genomic epidemiology study.
Amanda Ribeiro Dos Santos et al. Lancet Microbe 2024 3 (3) e282-e290
Population structure and genetic connectivity of Plasmodium falciparum in pre-elimination settings of Southern Africa.
Hazel B Gwarinda et al. Front Epidemiol 2024 3 1227071
Source Tracing of Leishmania donovani in Emerging Foci of Visceral Leishmaniasis, Western Nepal.
Pieter Monsieurs et al. Emerg Infect Dis 2024 2 (3) 611-613
Transmission ecology of Trypanosoma cruzi by Rhodnius prolixus (Reduviidae: Triatominae) infesting palm-tree species in the Colombian Orinoco, indicates risks to human populations.
Plutarco Urbano et al. PLoS Negl Trop Dis 2024 2 (2) e0011981
Sequence introgression from exogenous lineages underlies genomic and biological differences among Cryptosporidium parvum IOWA lines.
Wanyi Huang et al. Water Res 2024 2 121333
Naegleria fowleri Detected in Grand Teton National Park Hot Springs.
Elliott P Barnhart et al. ACS ES T Water 2024 2 (2) 628-637
Re-analysis of an outbreak of Shiga toxin-producing Escherichia coli O157:H7 associated with raw drinking milk using Nanopore sequencing.
David R Greig et al. Sci Rep 2024 3 (1) 5821
Genomic analysis of clinical Aeromonas isolates reveals genetic diversity but little evidence of genetic determinants for diarrhoeal disease.
Elizabeth J Klemm et al. Microb Genom 2024 3 (3)
Extra-intestinal pathogenic lineages of extended-spectrum β-lactamase (ESBL)-producing Escherichia coli are associated with prolonged ESBL gene carriage.
Boas C L van der Putten et al. Access Microbiol 2024 3 (2)
A novel metagenomic approach uncovers phage genes as markers for increased disinfectant tolerance in mixed Listeria monocytogenes communities.
Agnete Kirstine Karlsmose et al. Infect Genet Evol 2024 3 105582
Genome mining of Escherichia coli WG5D from drinking water source: unraveling antibiotic resistance genes, virulence factors, and pathogenicity.
Oluwaseyi Samuel Olanrewaju et al. BMC Genomics 2024 3 (1) 263
Bimodal distribution of azole susceptibility in Sporothrix brasiliensis isolates in Brazil.
Amanda Ribeiro Dos Santos et al. Antimicrob Agents Chemother 2024 2 e0162023
Genomic epidemiology of antifungal resistance in human and avian isolates of Candida albicans: a pilot study from the One Health perspective.
Marianna Domán et al. Front Vet Sci 2024 3 1345877
Putative molecular markers of Plasmodium falciparum resistance to antimalarial drugs in malaria parasites from Ghana.
Sena Adzoa Matrevi et al. Front Epidemiol 2024 3 1279835
Transboundary determinants of avian zoonotic infectious diseases: challenges for strengthening research capacity and connecting surveillance networks.
Jeanne M Fair et al. Front Microbiol 2024 3 1341842
SIEGA the integrated genomic surveillance system of Andalusia, a One Health regional resource connected with the clinic
Casimiro-Soriguer CS, et al. bioRxiv, Mar 1, 2024.
Strengthening Bordetella pertussis genomic surveillance by direct sequencing of residual positive specimens.
Yanhui Peng et al. J Clin Microbiol 2024 3 e0165323
Potentially Zoonotic Enteric Infections in Gorillas and Chimpanzees, Cameroon and Tanzania.
Emily K Strahan et al. Emerg Infect Dis 2024 2 (3) 577-580
Wastewater sequencing as a powerful tool to reveal SARS-CoV-2 variant introduction and spread in French Guiana, South America.
Marine Combe et al. Sci Total Environ 2024 3 171645
Comparison of fifteen SARS-CoV-2 nucleic acid amplification test assays used during the Canadian Laboratory Response Network's National SARS-CoV-2 Proficiency Program, May 2020 to June 2021.
Charlene Ranadheera et al. Can Commun Dis Rep 2024 2 (5) 180-189
Long-term monitoring of SARS-CoV-2 variants in wastewater using a coordinated workflow of droplet digital PCR and nanopore sequencing.
Katie Vigil et al. Water Res 2024 3 121338
Hybrid capture shotgun sequencing detected unexpected viruses in the cerebrospinal fluid of children with acute meningitis and encephalitis.
Cristian Launes et al. Eur J Clin Microbiol Infect Dis 2024 3
Rift Valley Fever virus M and L genome segment detection: a comparison of field-deployable reverse transcription insulated isothermal PCR (RT-iiPCR) and laboratory-based multiplex reverse transcription real-time PCR.
Jessie D Trujillo et al. J Clin Microbiol 2024 2 (3) e0043023
Genomic surveillance of malaria parasites in an indigenous community in the Peruvian Amazon.
Luis Cabrera-Sosa et al. Res Sq 2024 3
Neuroinvasive Bacillus cereus Infection in Immunocompromised Hosts: Epidemiologic Investigation of 5 Patients With Acute Myeloid Leukemia.
Jessica S Little et al. Open Forum Infect Dis 2024 3 (3) ofae048
Health Department: Massachusetts
Clinical impact and public health challenges of a PVL-MRSA bacteraemia outbreak amongst people who inject drugs in South Yorkshire, UK.
Matthew Beaumont et al. Access Microbiol 2024 3 (2)
Trends of Drug-Resistant Tuberculosis in an Urban and a Rural Area in China: A 10-Year Population-Based Molecular Epidemiological Study.
Peng Xu et al. Infect Drug Resist 2024 3 919-926
Drivers and impact of the early silent invasion of SARS-CoV-2 Alpha.
Benjamin Faucher et al. Nat Commun 2024 3 (1) 2152
Viral genome sequencing to decipher in-hospital SARS-CoV-2 transmission events.
Elisabeth Esser et al. Sci Rep 2024 3 (1) 5768
Simulation of Full HIV Cluster Networks in a Nationally Representative Model Indicates Intervention Opportunities.
Anne Marie France et al. J Acquir Immune Defic Syndr 2024 2 (4) 355-361
Ongoing measles outbreak, the Federation of Bosnia and Herzegovina, December 2023 to February 2024.
Sanjin Musa et al. Euro Surveill 2024 3 (9)
Underdetected dispersal and extensive local transmission drove the 2022 mpox epidemic.
Miguel I Paredes et al. Cell 2024 3
One Health in action: Investigation of the first detected local cluster of fatal borna disease virus 1 (BoDV-1) encephalitis, Germany 2022.
Merle M Böhmer et al. J Clin Virol 2024 3 105658
Nucleocapsid protein-specific monoclonal antibodies protect mice against Crimean-Congo hemorrhagic fever virus.
Aura R Garrison et al. Nat Commun 2024 2 (1) 1722
Safety and Immunogenicity of a Messenger RNA-Based Cytomegalovirus Vaccine in Healthy Adults: Results From a Phase 1, Randomized, Clinical Trial.
Carlos Fierro et al. J Infect Dis 2024 3
Detection of Mycobacterium tuberculosis DNA in CD34 peripheral blood mononuclear cells of adults with tuberculosis infection and disease.
Federica Repele et al. Int J Infect Dis 2024 3 106999
Interleukin-1 Receptor Antagonist Gene (IL1RN) Variants Modulate the Cytokine Release Syndrome and Mortality of COVID-19
Attur M, et al. J Infect Dis, Mar 13, 2024.
Effect of 1-year lifestyle intervention with energy-reduced Mediterranean diet and physical activity promotion on the gut metabolome and microbiota: a randomized clinical trial.
Jesús F García-Gavilán et al. Am J Clin Nutr 2024 3
Note: indicates that at least one CDC-affiliated author; indicates that the article addresses aspects of implementation or evaluation in clinical or public health practice.
Content Index
References
About AMD Clips
Clips are selected from a variety of sources, including PubMed, journal tables of contents, and online media. Special emphasis is given to the use of next-generation genetic sequencing in infectious disease public health surveillance, investigation, and development of new diagnostics and interventions. The collection is not comprehensive but aims to capture highlights, while surveying a wide range of topics.
Note:
- indicates that at least one CDC-affiliated author.
- indicates that the article addresses aspects of implementation or evaluation in clinical or public health practice.
- Health Department: identifies articles having authors affiliated with U.S. public health departments, either at the indicated state or its sub-jurisdictions (city, county); health departments in U.S. territories are labeled Other.
Disclaimer: Articles listed in the Public Health Knowledge Base are selected by the CDC Office of Public Health Genomics to provide current awareness of the literature and news. Inclusion in the update does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the update, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
- Page last reviewed:Feb 1, 2024
- Page last updated:Mar 14, 2024
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