Skip directly to search Skip directly to A to Z list Skip directly to navigation Skip directly to page options Skip directly to site content
Advanced Molecular Detection Clips Database|AMD Clips|PHGKB

Pathogen Genomics and Health Database|AMD Clips|PHGKB
Publication Date: Mar 23, 2023

The Strongest Evidence Yet That an Animal Started the Pandemic
Wu KJ. Atlantic, Mar 16, 2023.

COVID-origins study links raccoon dogs to Wuhan market: what scientists think
Mallapaty S. Nature, Mar 21, 2023.

Wuhan Market Samples Contained Covid and Animal Mixtures, Report Says
Mueller B. New York Times, Mar 21, 2023.

Viruses in sewage help to pinpoint typhoid hotspots
Mallapaty S. Nature, Mar 22, 2023.

Dutch Researchers Craft Glow-in-the-Dark POC Infectious Disease Test
Ketchum K. GenomeWeb, Mar 16, 2023.

GPEI Statement on cVDPV2 detections in Burundi and Democratic Republic of the Congo
Global Polio Eradication Initiative, Mar 16, 2023.

Vaccine makers prep bird flu shot for humans 'just in case'; rich nations lock in supplies
Figby J. Reuters, Mar 20, 2023.

Outbreak of Polio Linked to Newer Oral Vaccine Detected in Africa
Hein I. MedPage Today, Mar 17, 2023.

Tanzania reports a Marburg outbreak, Africa’s second this year
Branswell H. STAT, Mar 21, 2023.

Nucleotide Base Detected on Near-Earth Asteroid
GenomeWeb, Mar 22, 2023.


Learning From COVID-19 to Improve Surveillance for Emerging Threats.
Daniel B Jernigan et al. American journal of public health 2023 3 e1-e3 Brand Brand


Comparison of Eleven RNA Extraction Methods for Poliovirus Direct Molecular Detection in Stool Samples.
Joyce Odeke Akello et al. Microbiology spectrum 2023 3 e0425222

A simplified, amplicon-based method for whole genome sequencing of human respiratory syncytial viruses.
Xiaomin Dong et al. Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology 2023 3 105423


Genetic evidence of susceptible wildlife in SARS-CoV-2 positive samples at the Huanan Wholesale Seafood Market, Wuhan: Analysis and interpretation of data released by the Chinese Center for Disease Control
Crits-Christoph A, et al. Zenodo, Mar 20, 2023.

Genetic conservation across SARS-CoV-2 non-structural proteins - Insights into possible targets for treatment of future viral outbreaks.
Shubhangi Kandwal et al. Virology 2023 3 97-115

Overview of the SARS-CoV-2 genotypes circulating in Latin America during 2021.
Jose Arturo Molina-Mora et al. Frontiers in public health 2023 3 1095202

Phylogenetic landscape of Monkeypox Virus (MPV) during the early outbreak in New York City, 2022.
Luz H Patiño et al. Emerging microbes & infections 2023 3 1-111

Nirsevimab binding-site conservation in respiratory syncytial virus fusion glycoprotein worldwide between 1956 and 2021: an analysis of observational study sequencing data.
Deidre Wilkins et al. The Lancet. Infectious diseases 2023 3

Dynamics of Eastern equine encephalitis virus during the 2019 outbreak in the Northeast United States.
Verity Hill et al. medRxiv : the preprint server for health sciences 2023 3


The ongoing Streptococcus pyogenes (Group A Streptococcus) outbreak in London, United Kingdom in December 2022: a molecular epidemiology study.
Adela Alcolea-Medina et al. Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases 2023 3

Vancomycin Resistance in Enterococcus faecium from the Dallas, Texas, Area Is Conferred Predominantly on pRUM-Like Plasmids.
Moutusee Islam et al. mSphere 2023 3 e0002423

Linked Mutations in the Ebola Virus Polymerase Are Associated with Organ Specific Phenotypes.
Xiaofeng Dong et al. Microbiology spectrum 2023 3 e0415422

Unravelling the epidemiological diversity of Zika virus by analyzing key protein variations.
Santiago Leiva et al. Archives of virology 2023 3 (4) 115

Whole-Genome Sequencing of Candida haemulonii species complex from Brazil and the United States: genetic diversity and antifungal susceptibility.
Dality Keffelen de Barros Rodrigues et al. Medical mycology 2023 3 Brand


Outbreak of OXA-48-producing Enterobacteriaceae in a neonatal intensive care unit in Western Sweden.
Erika Tång Hallbäck et al. European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology 2023 3 Brand

Application of prophage sequence analysis to investigate a disease outbreak involving Salmonella Adjame, a rare serovar and implications for the population structure.
Ruimin Gao et al. Frontiers in microbiology 2023 3 1086198

Tap water as the source of a Legionnaires' disease outbreak spread to several residential buildings and one hospital, Finland, 2020 to 2021.
Silja Mentula et al. Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin 2023 3 (11) Brand

Discrepancy in the transmissibility of multidrug-resistant Mycobacterium tuberculosis in urban and rural areas in China.
Meng Li et al. Emerging microbes & infections 2023 3 1-32 Brand

Genomic epidemiology and transmission dynamics of recurrent Clostridioides difficile infection in Western Australia.
Daniel R Knight et al. European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology 2023 3

Analysis of well-annotated next-generation sequencing data reveals increasing cases of SARS-CoV-2 reinfection with Omicron.
Scott Burkholz et al. Communications biology 2023 3 (1) 288

The characteristics of HIV-1 subtype B on phylogenetic dynamic and molecular transmission network in Fuyang City, China, 2011 to 2019.
Wenting Pan et al. Frontiers in public health 2023 3 1092376

Quantifying the value of viral genomics when inferring who infected whom in the 2014-16 Ebola virus outbreak in Guinea.
Alexis Robert et al. Virus evolution 2023 3 (1) vead007


Estimation of COVID-19 mRNA Vaccine Effectiveness and COVID-19 Illness and Severity by Vaccination Status During Omicron BA.4 and BA.5 Sublineage Periods.
Ruth Link-Gelles et al. JAMA network open 2023 3 (3) e232598 Brand Brand

An mRNA Influenza Vaccine - Could It Deliver?
Kathleen M Neuzil et al. The New England journal of medicine 2023 3 (12) 1139-1141


Is there a placental microbiota? A critical review and re-analysis of published placental microbiota datasets.
Jonathan J Panzer et al. BMC microbiology 2023 3 (1) 76

Rapid adaptations of Legionella pneumophila to the human host.
Daniël Leenheer et al. Microbial genomics 2023 3 (3)

Genetic susceptibility to severe COVID-19.
Claudio Cappadona et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2023 3 105426

Note: Brand indicates that at least one CDC-affiliated author; Brand indicates that the article addresses aspects of implementation or evaluation in clinical or public health practice.

About Weekly AMD Clips

Clips are selected weekly from a variety of sources, including PubMed, journal tables of contents, and online media. Special emphasis is given to the use of next-generation genetic sequencing in infectious disease public health surveillance, investigation, and development of new diagnostics and interventions. The collection is not comprehensive but aims to capture highlights, while surveying a wide range of topics. CDC-authored articles are flagged. Items marked I&E address aspects of implementation or evaluation in clinical or public health practice.

Disclaimer: Articles listed in the Public Health Knowledge Base are selected by the CDC Office of Public Health Genomics to provide current awareness of the literature and news. Inclusion in the update does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the update, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.