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Public Health Genomics and Precision Health Knowledge Base (v9.0)
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Precision Health Database|Search|Public Health Genomics and Precision Health Knowledge Base (PHGKB)
Last data update: May 02, 2024
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Metagenomic sequencing of post-mortem tissue samples for the identification of pathogens associated with neonatal deaths.
Vicky L Baillie et al. Nat Commun 2023 14(1) 5373
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Gut microbial metabolism of 5-ASA diminishes its clinical efficacy in inflammatory bowel disease.
Raaj S Mehta et al. Nature medicine 2023
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Combining pathogen and host metagenomics for a better sepsis diagnostic.
Gant Vanya et al. Nature microbiology 2022 7(11) 1713-1714
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Integrated host-microbe plasma metagenomics for sepsis diagnosis in a prospective cohort of critically ill adults.
Kalantar Katrina L et al. Nature microbiology 2022
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Ethical Challenges Associated with Pathogen and Host Genetics in Infectious Disease.
Milne Richard et al. The New bioethics : a multidisciplinary journal of biotechnology and the body 2022 1-13
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The Current Status of Next-Generation Sequencing for Diagnosis of Central Nervous System Infections
MR Wilson et al, JAMA Neurology, August 22, 2022
The Role of Metagenomics and Next-Generation Sequencing in Infectious Disease Diagnosis.
Miller Steve et al. Clinical chemistry 2021 68(1) 115-124
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Evaluating the potential for respiratory metagenomics to improve treatment of secondary infection and detection of nosocomial transmission on expanded COVID-19 intensive care units
T Charalampous et al, Genome Medicine, November 17, 2021
Editorial: Applications of Metagenomics in Studying Human Cancer.
Huang Guohua et al. Frontiers in genetics 2021 12760141
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Discovering disease-causing pathogens in resource-scarce Southeast Asia using a global metagenomic pathogen monitoring system
JA Bohl et al, MEDRXIV, September 28, 2021
Over 50,000 Metagenomically Assembled Draft Genomes for the Human Oral Microbiome Reveal New Taxa.
Zhu Jie et al. Genomics, proteomics & bioinformatics 2021
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Genetics of Ankylosing Spondylitis-Focusing on the Ethnic Difference Between East Asia and Europe.
Wu Xin et al. Frontiers in genetics 2021 12671682
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The Disease Detective: Joe DeRisi invented a way to find pathogens that scientists didn’t even know to look for. Can it help prevent the next pandemic?
J Kahn, June 3, NY Times, June 5, 2021
Targeted Hybridization Capture of SARS-CoV-2 and Metagenomics Enables Genetic Variant Discovery and Nasal Microbiome Insights
DN Szakal et al, MEDRXIV, March 20, 2021
Nutrigenomics: lessons learned and future perspectives.
Brennan Lorraine et al. The American journal of clinical nutrition 2021 Jan
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Next-Generation Metagenomics: Methodological Challenges and Opportunities.
Laudadio Ilaria et al. Omics : a journal of integrative biology 2019 23(7) 327-333
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Real-time Metagenomic Analysis of Undiagnosed Fever Cases Unveils a Yellow Fever Outbreak in Edo State, Nigeria
Scientific Reports, February 2020
Advancing functional and translational microbiome research using meta-omics approaches.
Zhang Xu et al. Microbiome 2019 Dec 7(1) 154
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Baseline human gut microbiota profile in healthy people and standard reporting template.
King Charles H, et al. PloS one 2019 0 0. (9) e0206484
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Shotgun metagenomics: A promising new method toward diagnosing infections
S Rosen, Mayo clinic Blog, September 2019
Metagenomic identification of severe pneumonia pathogens with rapid Nanopore sequencing in mechanically-ventilated patients.
L Yang et al, MedXRIV preprints, July 24, 2019
The Supragingival Biofilm in Early Childhood Caries: Clinical and Laboratory Protocols and Bioinformatics Pipelines Supporting Metagenomics, Metatranscriptomics, and Metabolomics Studies of the Oral Microbiome.
Divaris Kimon et al. Methods in molecular biology (Clifton, N.J.) 2019 1922525-548
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Predicting Personal Metabolic Responses to Food Using Multi-omics Machine Learning in over 1000 Twins and Singletons from the UK and US: The PREDICT I Study (OR31-01-19).
Berry Sarah et al. Current developments in nutrition 2019 Jun 3(Suppl 1)
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Recent Trends of Saliva Omics Biomarkers for the Diagnosis and Treatment of Oral Cancer.
Chattopadhyay Indranil et al. Journal of oral biosciences 2019 Mar
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Clinical Metagenomic Sequencing for Diagnosis of Meningitis and Encephalitis.
Wilson Michael R et al. The New England journal of medicine 2019 Jun 380(24) 2327-2340
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Clinical metagenomics.
Chiu Charles Y, et al. Nature reviews. Genetics 2019 3 0.
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When Biology Gets Personal: Hidden Challenges of Privacy and Ethics in Biological Big Data.
Gürsoy Gamze et al. Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 2019 24386-390
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Messages from the third International Conference on Clinical Metagenomics (ICCMg3).
Ruppé Etienne et al. Microbes and infection 2019 Mar
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Detecting personalized determinates during drug treatment from omics big data.
Wang Lu et al. Current pharmaceutical design 2018 Nov
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Microbiome in chronic obstructive pulmonary disease.
Monsó Eduard et al. Annals of translational medicine 2017 Jun 5(12) 251
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Page last reviewed:
Feb 1, 2024
Page last updated:
May 02, 2024
Content source:
Public Health Genomics Branch in the Division of Blood Disorders and Public Health Genomics
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National Center on Birth Defects and Developmental Disabilities
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