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CDC-Authored Genomics and Precision Health Publications Database|Home|PHGKB

CDC-Authored Genomics and Precision Health Publications Database


Last data update: Aug 04, 2021. (Total: 3398 publications since 2011)
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Records 1-16 (of 16 Records)
Query Trace: all>>Duncan MacCannell[CDC Author]
Transmission Dynamics of Severe Acute Respiratory Syndrome Coronavirus 2 in High-Density Settings, Minnesota, USA, March-June 2020.
Nicholas B Lehnertz, Xiong Wang, Jacob Garfin, Joanne Taylor, Jennifer Zipprich, Brittany VonBank, Karen Martin, Dana Eikmeier, Carlota Medus, Brooke Wiedinmyer, Carmen Bernu, Matthew Plumb, Kelly Pung, Margaret A Honein, Rosalind Carter, Duncan MacCannell, Kirk E Smith, Kathryn Como-Sabetti, Kris Ehresmann, Richard Danila, and Ruth Lynfield
Emerging infectious diseases 2021 27(8)
Genomic Surveillance for SARS-CoV-2 Variants Circulating in the United States, December 2020-May 2021.
Prabasaj Paul, Anne Marie France, Yutaka Aoki, Dhwani Batra, Matthew Biggerstaff, Vivien Dugan, Summer Galloway, Aron J Hall, Michael A Johansson, Rebecca J Kondor, Alison Laufer Halpin, Brian Lee, Justin S Lee, Brandi Limbago, Adam MacNeil, Duncan MacCannell, Clinton R Paden, Krista Queen, Heather E Reese, Adam C Retchless, Rachel B Slayton, Molly Steele, Suxiang Tong, Maroya S Walters, David E Wentworth, and Benjamin J Silk
MMWR. Morbidity and mortality weekly report 2021 70(23) 846-850
SARS-CoV-2 Variants of Interest and Concern naming scheme conducive for global discourse.
Frank Konings, Mark D Perkins, Jens H Kuhn, Mark J Pallen, Erik J Alm, Brett N Archer, Amal Barakat, Trevor Bedford, Jinal N Bhiman, Leon Caly, Lisa L Carter, Anne Cullinane, Tulio de Oliveira, Julian Druce, Ihab El Masry, Roger Evans, George F Gao, Alexander E Gorbalenya, Esther Hamblion, Belinda L Herring, Emma Hodcroft, Edward C Holmes, Manish Kakkar, Shagun Khare, Marion P G Koopmans, Bette Korber, Juliana Leite, Duncan MacCannell, Marco Marklewitz, Sebastian Maurer-Stroh, Jairo Andres Mendez Rico, Vincent J Munster, Richard Neher, Bas Oude Munnink, Boris I Pavlin, Malik Peiris, Leo Poon, Oliver Pybus, Andrew Rambaut, Paola Resende, Lorenzo Subissi, Volker Thiel, Suxiang Tong, Sylvie van der Werf, Anne von Gottberg, John Ziebuhr, and Maria D Van Kerkhove
Nature microbiology 2021
Cryptic transmission of SARS-CoV-2 in Washington state.
Trevor Bedford, Alexander L Greninger, Pavitra Roychoudhury, Lea M Starita, Michael Famulare, Meei-Li Huang, Arun Nalla, Gregory Pepper, Adam Reinhardt, Hong Xie, Lasata Shrestha, Truong N Nguyen, Amanda Adler, Elisabeth Brandstetter, Shari Cho, Danielle Giroux, Peter D Han, Kairsten Fay, Chris D Frazar, Misja Ilcisin, Kirsten Lacombe, Jover Lee, Anahita Kiavand, Matthew Richardson, Thomas R Sibley, Melissa Truong, Caitlin R Wolf, Deborah A Nickerson, Mark J Rieder, Janet A Englund, , James Hadfield, Emma B Hodcroft, John Huddleston, Louise H Moncla, Nicola F Müller, Richard A Neher, Xianding Deng, Wei Gu, Scot Federman, Charles Chiu, Jeff S Duchin, Romesh Gautom, Geoff Melly, Brian Hiatt, Philip Dykema, Scott Lindquist, Krista Queen, Ying Tao, Anna Uehara, Suxiang Tong, Duncan MacCannell, Gregory L Armstrong, Geoffrey S Baird, Helen Y Chu, Jay Shendure, and Keith R Jerome
Science (New York, N.Y.) 2020 Sep
STROBE-metagenomics: a STROBE extension statement to guide the reporting of metagenomics studies.
Tehmina Bharucha, Clarissa Oeser, Francois Balloux, Julianne R Brown, Ellen C Carbo, Andre Charlett, Charles Y Chiu, Eric C J Claas, Marcus C de Goffau, Jutte J C de Vries, Marc Eloit, Susan Hopkins, Jim F Huggett, Duncan MacCannell, Sofia Morfopoulou, Avindra Nath, Denise M O'Sullivan, Lauren B Reoma, Liam P Shaw, Igor Sidorov, Patricia J Simner, Le Van Tan, Emma C Thomson, Lucy van Dorp, Michael R Wilson, Judith Breuer, and Nigel Field
The Lancet. Infectious diseases 2020 Aug
Genomic surveillance reveals multiple introductions of SARS-CoV-2 into Northern California.
Xianding Deng, Wei Gu, Scot Federman, Louis du Plessis, Oliver G Pybus, Nuno Faria, Candace Wang, Guixia Yu, Brian Bushnell, Chao-Yang Pan, Hugo Guevara, Alicia Sotomayor-Gonzalez, Kelsey Zorn, Allan Gopez, Venice Servellita, Elaine Hsu, Steve Miller, Trevor Bedford, Alexander L Greninger, Pavitra Roychoudhury, Lea M Starita, Michael Famulare, Helen Y Chu, Jay Shendure, Keith R Jerome, Catie Anderson, Karthik Gangavarapu, Mark Zeller, Emily Spencer, Kristian G Andersen, Duncan MacCannell, Clinton R Paden, Yan Li, Jing Zhang, Suxiang Tong, Gregory Armstrong, Scott Morrow, Matthew Willis, Bela T Matyas, Sundari Mase, Olivia Kasirye, Maggie Park, Godfred Masinde, Curtis Chan, Alexander T Yu, Shua J Chai, Elsa Villarino, Brandon Bonin, Debra A Wadford, and Charles Y Chiu
Science (New York, N.Y.) 2020 Jun
Next-Generation Sequencing of Infectious Pathogens.
Marta Gwinn, Duncan MacCannell, and Gregory L Armstrong
JAMA 2019 Feb
Platforms and Analytical Tools Used in Nucleic Acid Sequence-Based Microbial Genotyping Procedures.
Duncan MacCannell
Microbiology spectrum 2019 Jan (1)
Evolution and Transmission of Carbapenem-Resistant Klebsiella pneumoniae Expressing the blaOXA-232 Gene During an Institutional Outbreak Associated With Endoscopic Retrograde Cholangiopancreatography.
Shangxin Yang, Peera Hemarajata, Janet Hindler, Fan Li, Helty Adisetiyo, Grace Aldrovandi, Robert Sebra, Andrew Kasarskis, Duncan MacCannell, Xavier Didelot, Dana Russell, Zachary Rubin, and Romney Humphries
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2017 Apr (7) 894-901
Good laboratory practice for clinical next-generation sequencing informatics pipelines.
Amy S Gargis, Lisa Kalman, David P Bick, Cristina da Silva, David P Dimmock, Birgit H Funke, Sivakumar Gowrisankar, Madhuri R Hegde, Shashikant Kulkarni, Christopher E Mason, Rakesh Nagarajan, Karl V Voelkerding, Elizabeth A Worthey, Nazneen Aziz, John Barnes, Sarah F Bennett, Himani Bisht, Deanna M Church, Zoya Dimitrova, Shaw R Gargis, Nabil Hafez, Tina Hambuch, Fiona C L Hyland, Ruth Ann Luna, Duncan MacCannell, Tobias Mann, Megan R McCluskey, Timothy K McDaniel, Lilia M Ganova-Raeva, Heidi L Rehm, Jeffrey Reid, David S Campo, Richard B Resnick, Perry G Ridge, Marc L Salit, Pavel Skums, Lee-Jun C Wong, Barbara A Zehnbauer, Justin M Zook, and Ira M Lubin
Nature biotechnology 2015 Jul (7) 689-93
Chlamydia psittaci Comparative Genomics Reveals Intraspecies Variations in the Putative Outer Membrane and Type III Secretion System Genes.
Bernard J Wolff, Shatavia S Morrison, Denise Pesti, Satishkumar Ranganathan Ganakammal, Ganesh Srinivasamoorthy, Shankar Changayil, M Ryan Weil, Duncan MacCannell, Lori Rowe, Michael Frace, Branson W Ritchie, Deborah Dean, and Jonas M Winchell
Microbiology (Reading, Engl.) 2015 Apr 17.
Genome Sequences of 228 Shiga Toxin-Producing Escherichia coli Isolates and 12 Isolates Representing Other Diarrheagenic E. coli Pathotypes.
Eija Trees, Nancy Strockbine, Shankar Changayil, Satishkumar Ranganathan, Kun Zhao, Ryan Weil, Duncan MacCannell, Ashley Sabol, Amber Schmidtke, Haley Martin, Devon Stripling, Efrain M Ribot, and Peter Gerner-Smidt
Genome Announc 2014 2(4)
Strengthening the Reporting of Molecular Epidemiology for Infectious Diseases (STROME-ID): an extension of the STROBE statement.
Nigel Field, Ted Cohen, Marc J Struelens, Daniel Palm, Barry Cookson, Judith R Glynn, Valentina Gallo, Mary Ramsay, Pam Sonnenberg, Duncan MacCannell, Andre Charlett, Matthias Egger, Jonathan Green, Paolo Vineis, and Ibrahim Abubakar
The Lancet. Infectious diseases 2014 Apr (4) 341-52
Bacterial strain typing.
Duncan MacCannell
Clin. Lab. Med. 2013 Sep 33(3) 629-50
Genome Sequence of Salmonella enterica Serotype Tennessee Strain CDC07-0191, Implicated in the 2006-2007 Multistate Food-Borne Outbreak Linked to Peanut Butter in the United States.
Xiangyu Deng, Joelle K Salazar, Stephanie Frezet, Duncan MacCannell, Efrain M Ribot, Patricia I Fields, W Florian Fricke, and Wei Zhang
Genome Announc 2013 1(3)
Draft genome sequences of Bordetella holmesii strains from blood (F627) and nasopharynx (H558).
Kathleen M Tatti, Vladimir N Loparev, Satishkumar Ranganathanganakammal, Shankar Changayil, Michael Frace, Michael Ryan Weil, Scott Sammons, Duncan MacCannell, Leonard W Mayer, and M Lucia Tondella
Genome Announc 1(2) e0005613
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