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CDC-Authored Genomics and Precision Health Publications Database|Home|PHGKB

CDC-Authored Genomics and Precision Health Publications Database


Last data update: Sep 22, 2022. (Total: 4021 publications since 2011)
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Records 1-30 (of 68 Records)
Query Trace: all>>Lesley McGee[CDC Author]
Key features of pneumococcal isolates recovered in Central and Northwestern Russia in 2011-2018 determined through whole-genome sequencing.
Ekaterina Egorova, Narender Kumar, Rebecca A Gladstone, Yulia Urban, Elena Voropaeva, A V Chaplin, Elena Rumiantseva, T S Svistunova, Paulina A Hawkins, Keith P Klugman, Robert F Breiman, Lesley McGee, Stephen D Bentley, and Stephanie W Lo
Microbial genomics 2022 8(9)
Emergence of a multidrug-resistant and virulent Streptococcus pneumoniae lineage mediates serotype replacement after PCV13: an international whole-genome sequencing study.
Stephanie W Lo, Kate Mellor, Robert Cohen, Alba Redin Alonso, Sophie Belman, Narender Kumar, Paulina A Hawkins, Rebecca A Gladstone, Anne von Gottberg, Balaji Veeraraghavan, K L Ravikumar, Rama Kandasamy, Sir Andrew J Pollard, Samir K Saha, Godfrey Bigogo, Martin Antonio, Brenda Kwambana-Adams, Shaper Mirza, Sadia Shakoor, Imran Nisar, Jennifer E Cornick, Deborah Lehmann, Rebecca L Ford, Betuel Sigauque, Paul Turner, Jennifer Moïsi, Stephen K Obaro, Ron Dagan, Idrissa Diawara, Anna Skoczynska, Hui Wang, Philip E Carter, Keith P Klugman, Gail Rodgers, Robert F Breiman, Lesley McGee, Stephen D Bentley, Carmen Muñoz Almagro, Emmanuelle Varon, and
The Lancet. Microbe 2022
Invasive Group A Streptococcal Penicillin Binding Protein 2× Variants Associated with Reduced Susceptibility to β-Lactam Antibiotics in the United States, 2015-2021.
Sopio Chochua, Benjamin Metcalf, Zhongya Li, Saundra Mathis, Theresa Tran, Joy Rivers, Katherine E Fleming-Dutra, Yuan Li, Lesley McGee, and Bernard Beall
Antimicrobial agents and chemotherapy 2022 e0080222
Distinct Streptococcus pneumoniae cause invasive disease in Papua New Guinea.
Kate C Mellor, Stephanie Lo, Mition Yoannes, Audrey Michael, Tilda Orami, Andrew R Greenhill, Robert F Breiman, Paulina Hawkins, Lesley McGee, Stephen D Bentley, Rebecca L Ford, and Deborah Lehmann
Microbial genomics 2022 8(7)
Genetic background of Cambodian pneumococcal carriage isolates following pneumococcal conjugate vaccine 13.
Sophie Belman, Sona Soeng, Chansovannara Soputhy, Rebecca Gladstone, Paulina A Hawkins, Robert F Breiman, Lesley McGee, Stephen D Bentley, Stephanie W Lo, and Paul Turner
Microbial genomics 2022 8(6)
Effect of childhood vaccination and antibiotic use on pneumococcal populations and genome-wide associations with disease among children in Nepal: an observational study.
Rama Kandasamy, Stephanie Lo, Meeru Gurung, Michael J Carter, Rebecca Gladstone, John Lees, Sonu Shrestha, Stephen Thorson, Sanjeev Bijukchhe, Madhav C Gautam, Reetu Shrestha, Sunaina Gurung, Bibek Khadka, Lesley McGee, Robert F Breiman, David R Murdoch, Dominic F Kelly, Shrijana Shrestha, Stephen D Bentley, and Andrew J Pollard
The Lancet. Microbe 2022 3(7) e503-e511
Population genomics of pneumococcal carriage in South Africa following the introduction of the 13-valent pneumococcal conjugate vaccine (PCV13) immunization.
Nida Javaid, Courtney Olwagen, Susan Nzenze, Paulina Hawkins, Rebecca Gladstone, Lesley McGee, Robert F Breiman, Stephen D Bentley, Shabir A Madhi, and Stephanie Lo
Microbial genomics 2022 8(6)
Continued Increase of Erythromycin- and Clindamycin-Nonsusceptibility among Invasive Group A Streptococci Driven by Genomic Clusters, USA, 2018-2019.
Yuan Li, Joy Rivers, Saundra Mathis, Zhongya Li, Lesley McGee, Sopio Chochua, Benjamin J Metcalf, Katherine E Fleming-Dutra, Srinivas A Nanduri, and Bernard Beall
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2022
Cluster Transmission Drives Invasive Group A Streptococcus Disease Within the US and is Focused on Communities Experiencing Disadvantage.
Benjamin Metcalf, Srinivas Nanduri, Sopio Chochua, Yuan Li, Katherine Fleming-Dutra, Lesley McGee, and Bernard Beall
The Journal of infectious diseases 2022
Comparative genomics of disease and carriage serotype 1 pneumococci.
Chrispin Chaguza, Chinelo Ebruke, Madikay Senghore, Stephanie W Lo, Peggy-Estelle Tientcheu, Rebecca A Gladstone, Gerry Tonkin-Hill, Jennifer E Cornick, Marie Yang, Archibald Worwui, Lesley McGee, Robert F Breiman, Keith P Klugman, Aras Kadioglu, Dean B Everett, Grant Mackenzie, Nicholas J Croucher, Anna Roca, Brenda A Kwambana-Adams, Martin Antonio, and Stephen D Bentley
Genome biology and evolution 2022
A Streptococcus pneumoniae lineage usually associated with pneumococcal conjugate vaccine (PCV) serotypes is the most common cause of serotype 35B invasive disease in South Africa, following routine use of PCV.
Kedibone M Ndlangisa, Mignon du Plessis, Stephanie Lo, Linda de Gouveia, Chrispin Chaguza, Martin Antonio, Brenda Kwambana-Adams, Jennifer Cornick, Dean B Everett, Ron Dagan, Paulina A Hawkins, Bernard Beall, Alejandra Corso, Samanta Cristine Grassi Almeida, Theresa J Ochoa, Stephen Obaro, Sadia Shakoor, Eric S Donkor, Rebecca A Gladstone, Pak Leung Ho, Metka Paragi, Sanjay Doiphode, Somporn Srifuengfung, Rebecca Ford, Jennifer Moïsi, Samir K Saha, Godfrey Bigogo, Betuel Sigauque, Özgen Köseoglu Eser, Naima Elmdaghri, Leonid Titov, Paul Turner, K L Ravi Kumar, Rama Kandasamy, Ekaterina Egorova, Margaret Ip, Robert F Breiman, Keith P Klugman, Lesley McGee, Stephen D Bentley, Anne von Gottberg, and The Global Pneumococcal Sequencing Consortium
Microbial genomics 2022 8(4)
Invasive pneumococcal disease clusters disproportionally impact persons experiencing homelessness, injecting drug users, and the western United States.
Bernard Beall, Sopio Chochua, Zhongya Li, Theresa Tran, Jasmine Varghese, Lesley McGee, Yuan Li, and Benjamin Metcalf
The Journal of infectious diseases 2022
Widespread sharing of pneumococcal strains in a rural African setting: proximate villages are more likely to share similar strains that are carried at multiple timepoints.
Madikay Senghore, Chrispin Chaguza, Ebrima Bojang, Peggy-Estelle Tientcheu, Rowan E Bancroft, Stephanie W Lo, Rebecca A Gladstone, Lesley McGee, Archibald Worwui, Ebenezer Foster-Nyarko, Fatima Ceesay, Catherine Bi Okoi, Keith P Klugman, Robert F Breiman, Stephen D Bentley, Richard Adegbola, Martin Antonio, William P Hanage, and Brenda A Kwambana-Adams
Microbial genomics 2022 8(2)
Genomic Characterization of Group A Streptococci Causing Pharyngitis and Invasive Disease in Colorado, USA, June 2016 - April 2017.
Yuan Li, Samuel Dominguez, Srinivas A Nanduri, Joy Rivers, Saundra Mathis, Zhongya Li, Lesley McGee, Sopio Chochua, Benjamin J Metcalf, Chris A Van Beneden, Bernard Beall, and Lisa Miller
The Journal of infectious diseases 2021
Genomic Surveillance of Streptococcus pyogenes Strains Causing Invasive Disease, United States, 2016-2017.
Yuan Li, Joy Rivers, Saundra Mathis, Zhongya Li, Srinivasan Velusamy, Srinivas A Nanduri, Chris A Van Beneden, Paula Snippes-Vagnone, Ruth Lynfield, Lesley McGee, Sopio Chochua, Benjamin J Metcalf, and Bernard Beall
Frontiers in microbiology 2020 111547
Genomic surveillance of invasive Streptococcus pneumoniae isolates in the period pre-PCV10 and post-PCV10 introduction in Brazil.
Samanta C G Almeida, Stephanie W Lo, Paulina A Hawkins, Rebecca A Gladstone, Ana Paula Cassiolato, Keith P Klugman, Robert F Breiman, Stephen D Bentley, Lesley McGee, and Maria-Cristina de C Brandileone
Microbial genomics 2021 7(10)
Population genetic structure, serotype distribution and antibiotic resistance of Streptococcus pneumoniae causing invasive disease in children in Argentina.
Paula Gagetti, Stephanie W Lo, Paulina A Hawkins, Rebecca A Gladstone, Mabel Regueira, Diego Faccone, Sireva-Argentina Group, Keith P Klugman, Robert F Breiman, Lesley McGee, Stephen D Bentley, and Alejandra Corso
Microbial genomics 2021 7(9)
Streptococcus pneumoniae genomic datasets from an Indian population describing pre-vaccine evolutionary epidemiology using a whole genome sequencing approach.
Geetha Nagaraj, Vandana Govindan, Feroze Ganaie, V T Venkatesha, Paulina A Hawkins, Rebecca A Gladstone, Lesley McGee, Robert F Breiman, Stephen D Bentley, Keith P Klugman, Stephanie W Lo, and K L Ravikumar
Microbial genomics 2021 7(9)
Whole genome sequence based capsular typing and antimicrobial resistance prediction of Group B streptococcal isolates from colonized pregnant women in Nigeria.
Mienye Bob-Manuel, Lesley McGee, Jeremiah A Igunma, Mary A Alex-Wele, Orikomaba K Obunge, and Kennedy T Wariso
BMC genomics 2021 22(1) 627
Phylogeography and resistome of pneumococcal meningitis in West Africa before and after vaccine introduction.
Madikay Senghore, Peggy-Estelle Tientcheu, Archibald Kwame Worwui, Sheikh Jarju, Catherine Okoi, Sambou M S Suso, Ebenezer Foster-Nyarko, Chinelo Ebruke, Mohamadou Sonko, Mamdou Hama Kourna, Joseph Agossou, Enyonam Tsolenyanu, Lorna Awo Renner, Daniel Ansong, Bakary Sanneh, Catherine Boni Cisse, Angeline Boula, Berthe Miwanda, Stephanie W Lo, Rebecca A Gladstone, Stephanie Schwartz, Paulina Hawkins, Lesley McGee, Keith P Klugman, Robert F Breiman, Stephen D Bentley, Jason M Mwenda, Brenda Anna Kwambana-Adams, and Martin Antonio
Microbial genomics 2021 7(7)
The role of interspecies recombinations in the evolution of antibiotic resistant pneumococci.
Joshua Charles D'Aeth, Mark P G van der Linden, Lesley McGee, Herminia de Lencastre, Paul Turner, Jae-Hoon Song, Stephanie W Lo, Rebecca A Gladstone, Raquel Sa-Leao, Kwan Soo Ko, William P Hanage, Robert F Breiman, Bernard Beall, Stephen D Bentley, Nicholas J Croucher, and
eLife 2021 10
Low but Increasing Prevalence of Reduced Beta-lactam Susceptibility Among Invasive Group B Streptococcal Isolates, US Population-Based Surveillance, 1998-2018.
Miwako Kobayashi, Lesley McGee, Sopio Chochua, Mirasol Apostol, Nisha B Alden, Monica M Farley, Lee H Harrison, Ruth Lynfield, Paula Snippes Vagnone, Chad Smelser, Alison Muse, Ann R Thomas, Li Deng, Benjamin J Metcalf, Bernard W Beall, and Stephanie J Schrag
Open forum infectious diseases 2021 Feb 8(2) ofaa634
Carriage Dynamics of Pneumococcal Serotypes in Naturally Colonized Infants in a Rural African Setting During the First Year of Life.
Chrispin Chaguza, Madikay Senghore, Ebrima Bojang, Stephanie W Lo, Chinelo Ebruke, Rebecca A Gladstone, Peggy-Estelle Tientcheu, Rowan E Bancroft, Archibald Worwui, Ebenezer Foster-Nyarko, Fatima Ceesay, Catherine Okoi, Lesley McGee, Keith P Klugman, Robert F Breiman, Michael R Barer, Richard A Adegbola, Martin Antonio, Stephen D Bentley, and Brenda A Kwambana-Adams
Frontiers in pediatrics 2020 8587730
Features of Streptococcus agalactiae strains recovered from pregnant women and newborns attending different hospitals in Ethiopia.
Musa Mohammed Ali, Yimtubezinash Woldeamanuel, Daniel Asrat, Demissie Assegu Fenta, Bernard Beall, Stephanie Schrag, and Lesley McGee
BMC infectious diseases 2020 Nov 20(1) 848
A Nationwide Outbreak of Invasive Pneumococcal Disease in Israel Caused by Streptococcus Pneumoniae Serotype 2.
Ron Dagan, Shalom Ben-Shimol, Rachel Benisty, Gili Regev-Yochay, Stephanie W Lo, Stephen D Bentley, Paulina A Hawkins, Lesley McGee, Merav Ron, Noga Givon-Lavi, Lea Valinsky, and Assaf Rokney
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2020 Nov
Invasive pneumococcal strain distributions and isolate clusters associated with persons experiencing homelessness during 2018.
Benjamin J Metcalf, Sopio Chochua, Hollis Walker, Theresa Tran, Zhongya Li, Jasmine Varghese, Paula M Snippes Vagnone, Ruth Lynfield, Lesley McGee, Yuan Li, Tamara Pilishvili, and Bernard Beall
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2020 Nov
Sequential quadriplex real-time PCR for identifying 20 common emm types of Group A Streptococcus .
Srinivasan Velusamy, Katherine Jordak, Madeline Kupor, Sopio Chochua, Lesley McGee, and Bernard Beall
Journal of clinical microbiology 2020 Oct
Bacterial genome-wide association study of hyper-virulent pneumococcal serotype 1 identifies genetic variation associated with neurotropism.
Chrispin Chaguza, Marie Yang, Jennifer E Cornick, Mignon du Plessis, Rebecca A Gladstone, Brenda A Kwambana-Adams, Stephanie W Lo, Chinelo Ebruke, Gerry Tonkin-Hill, Chikondi Peno, Madikay Senghore, Stephen K Obaro, Sani Ousmane, Gerd Pluschke, Jean-Marc Collard, Betuel Sigaùque, Neil French, Keith P Klugman, Robert S Heyderman, Lesley McGee, Martin Antonio, Robert F Breiman, Anne von Gottberg, Dean B Everett, Aras Kadioglu, and Stephen D Bentley
Communications biology 2020 Oct 3(1) 559
Upsurge of conjugate vaccine serotype 4 invasive pneumococcal disease clusters among adults experiencing homelessness in California, Colorado, and New Mexico.
Bernard Beall, Hollis Walker, Theresa Tran, Zhongya Li, Jasmine Varghese, Lesley McGee, Yuan Li, Benjamin J Metcalf, Ryan Gierke, Emily Mosites, Sopio Chochua, and Tamara Pilishvili
The Journal of infectious diseases 2020 Aug
Within-host microevolution of Streptococcus pneumoniae is rapid and adaptive during natural colonisation.
Chrispin Chaguza, Madikay Senghore, Ebrima Bojang, Rebecca A Gladstone, Stephanie W Lo, Peggy-Estelle Tientcheu, Rowan E Bancroft, Archibald Worwui, Ebenezer Foster-Nyarko, Fatima Ceesay, Catherine Okoi, Lesley McGee, Keith P Klugman, Robert F Breiman, Michael R Barer, Richard A Adegbola, Martin Antonio, Stephen D Bentley, and Brenda A Kwambana-Adams
Nature communications 2020 Jul 11(1) 3442
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