Skip directly to search Skip directly to A to Z list Skip directly to navigation Skip directly to page options Skip directly to site content

CDC-Authored Genomics and Precision Health Publications Database|Home|PHGKB

CDC-Authored Genomics and Precision Health Publications Database


Last data update: Jul 27, 2021. (Total: 3391 publications since 2011)
   dataset
Filtered By:
Next
Records 1-30 (of 44 Records)
Query Trace: all>>William M Switzer[CDC Author]
Accurate assembly of minority viral haplotypes from next-generation sequencing through efficient noise reduction.
Sergey Knyazev, Viachaslau Tsyvina, Anupama Shankar, Andrew Melnyk, Alexander Artyomenko, Tatiana Malygina, Yuri B Porozov, Ellsworth M Campbell, William M Switzer, Pavel Skums, Serghei Mangul, and Alex Zelikovsky
Nucleic acids research 2021
The CDC HIV Outbreak Coordination Unit: Developing a Standardized, Collaborative Approach to HIV Outbreak Assessment and Response.
Alexandra M Oster, Anne Marie France, Robert P McClung, Kate Buchacz, Sheryl B Lyss, Philip J Peters, Paul J Weidle, William M Switzer, Stanley A Phillip, John T Brooks, and Angela L Hernandez
Public health reports (Washington, D.C. : 1974) 2021 333549211018678
Increasing Capacity to Detect Clusters of Rapid HIV Transmission in Varied Populations-United States.
Alexandra M Oster, Nivedha Panneer, Sheryl B Lyss, R Paul McClung, Meg Watson, Neeraja Saduvala, M Cheryl Bañez Ocfemia, Laurie Linley, William M Switzer, Joel O Wertheim, Ellsworth Campbell, Angela L Hernandez, and Anne Marie France
Viruses 2021 13(4)
CD4 receptor diversity represents an ancient protection mechanism against primate lentiviruses.
Ronnie M Russell, Frederic Bibollet-Ruche, Weimin Liu, Scott Sherrill-Mix, Yingying Li, Jesse Connell, Dorothy E Loy, Stephanie Trimboli, Andrew G Smith, Alexa N Avitto, Marcos V P Gondim, Lindsey J Plenderleith, Katherine S Wetzel, Ronald G Collman, Ahidjo Ayouba, Amandine Esteban, Martine Peeters, William J Kohler, Richard A Miller, Sandrine François-Souquiere, William M Switzer, Vanessa M Hirsch, Preston A Marx, Alex K Piel, Fiona A Stewart, Alexander V Georgiev, Volker Sommer, Paco Bertolani, John A Hart, Terese B Hart, George M Shaw, Paul M Sharp, and Beatrice H Hahn
Proceedings of the National Academy of Sciences of the United States of America 2021 118(13)
Human T-cell lymphotropic virus type 1 transmission dynamics in rural villages in the democratic republic of the congo with high nonhuman primate exposure.
Megan Halbrook, Adva Gadoth, Anupama Shankar, HaoQiang Zheng, Ellsworth M Campbell, Nicole A Hoff, Jean-Jacques Muyembe, Emile Okitolonda Wemakoy, Anne W Rimoin, and William M Switzer
PLoS neglected tropical diseases 2021 Jan 15(1) e0008923
Molecular Epidemiological Analysis of the Origin and Transmission Dynamics of the HIV-1 CRF01_AE Sub-Epidemic in Bulgaria.
Ivailo Alexiev, Ellsworth M Campbell, Sergey Knyazev, Yi Pan, Lyubomira Grigorova, Reneta Dimitrova, Aleksandra Partsuneva, Anna Gancheva, Asya Kostadinova, Carole Seguin-Devaux, Ivaylo Elenkov, Nina Yancheva, and William M Switzer
Viruses 2021 Jan 13(1)
Identification of an HIV-1 and Neurosyphilis Cluster in Vermont.
Devika Singh, William M Switzer, Roy Belcher, Daniel Daltry, and Jennifer S Read
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2020 Dec
Koala retrovirus diversity, transmissibility, and disease associations.
HaoQiang Zheng, Yi Pan, Shaohua Tang, Geoffrey W Pye, Cynthia K Stadler, Larry Vogelnest, Kimberly Vinette Herrin, Bruce A Rideout, and William M Switzer
Retrovirology 2020 Oct 17(1) 34
Human Immunodeficiency Virus (HIV) Outbreak Investigation Among Persons Who Inject Drugs in Massachusetts Enhanced by HIV Sequence Data.
Matthew Tumpney, Betsey John, Nivedha Panneer, R Paul McClung, Ellsworth M Campbell, Kathleen Roosevelt, Alfred DeMaria, Kate Buchacz, William M Switzer, Sheryl Lyss, and Kevin Cranston
The Journal of infectious diseases 2020 Sep 222(Supplement_5) S259-S267
Employing Molecular Phylodynamic Methods to Identify and Forecast HIV Transmission Clusters in Public Health Settings: A Qualitative Study.
Shannan N Rich, Veronica L Richards, Carla N Mavian, William M Switzer, Brittany Rife Magalis, Karalee Poschman, Shana Geary, Steven E Broadway, Spencer B Bennett, Jason Blanton, Thomas Leitner, J Lucas Boatwright, Nichole E Stetten, Robert L Cook, Emma C Spencer, Marco Salemi, and Mattia Prosperi
Viruses 2020 Aug 12(9)
Complete Genome Sequence of a Baboon Simian Foamy Virus Isolated from an Infected Human.
Anupama Shankar, Vedapuri Shanmugam, and William M Switzer
Microbiology resource announcements 2020 Jul 9(27)
Using an Established Outbreak Response Plan and Molecular Epidemiology Methods in an HIV Transmission Cluster Investigation, Tennessee, January-June 2017.
Lindsey Sizemore, Mary-Margaret Fill, Samantha A Mathieson, Jennifer Black, Meredith Brantley, Kelly Cooper, Joy Garrett, William M Switzer, Philip J Peters, and Carolyn Wester
Public health reports (Washington, D.C. : 1974) 2020 Mar 33354920915445
Investigation of Presumptive HIV Transmission Associated with Hospitalization Using Nucleotide Sequence Analysis - New York, 2017.
Bridget J Anderson, Ernest Clement, Randall Collura, Abigail Gallucci, Emily Westheimer, Sarah Braunstein, Karen Southwick, Eleanor Adams, Emily Lutterloh, Charles Gonzalez, Robert McDonald, Hongwei Jia, William M Switzer, Priti R Patel, M Patricia Joyce, and Alexandra M Oster
MMWR. Morbidity and mortality weekly report 2020 Mar (10) 260-264
Phylodynamic Analysis Complements Partner Services by Identifying Acute and Unreported HIV Transmission.
Ellsworth M Campbell, Anne Patala, Anupama Shankar, Jin-Fen Li, Jeffrey A Johnson, Emily Westheimer, Cynthia L Gay, Stephanie E Cohen, William M Switzer, and Philip J Peters
Viruses 2020 Jan (2)
Natural selection favoring more transmissible HIV detected in United States molecular transmission network.
Joel O Wertheim, Alexandra M Oster, William M Switzer, Chenhua Zhang, Nivedha Panneer, Ellsworth Campbell, Neeraja Saduvala, Jeffrey A Johnson, and Walid Heneine
Nature communications 2019 Dec (1) 5788
Molecular Analysis of the Complete Genome of a Simian Foamy Virus Infecting Hylobates pileatus (pileated gibbon) Reveals Ancient Co-Evolution with Lesser Apes.
Anupama Shankar, Samuel D Sibley, Tony L Goldberg, and William M Switzer
Viruses 2019 Jul (7)
Genome-wide patterns of gene expression in a wild primate indicate species-specific mechanisms associated with tolerance to natural simian immunodeficiency virus infection.
Noah D Simons, Geeta N Eick, Maria J Ruiz-Lopez, David Hyeroba, Patrick A Omeja, Geoffrey Weny, Colin A Chapman, Tony L Goldberg, HaoQiang Zheng, Anupama Shankar, William M Switzer, Simon D W Frost, James H Jones, Kirstin N Sterner, and Nelson Ting
Genome biology and evolution 2019 May
Clinical and Molecular Features of Feline Foamy Virus and Feline Leukemia Virus Co-Infection in Naturally-Infected Cats.
Liliane T F Cavalcante, Cláudia P Muniz, Hongwei Jia, Anderson M Augusto, Fernando Troccoli, Sheila de O Medeiros, Carlos G A Dias, William M Switzer, Marcelo A Soares, and André F Santos
Viruses 2018 Dec 10(12)
Maintenance and reappearance of extremely divergent intra-host HIV-1 variants.
Joel O Wertheim, Alexandra M Oster, Ben Murrell, Neeraja Saduvala, Walid Heneine, William M Switzer, and Jeffrey A Johnson
Virus evolution 2018 Jul (2) vey030
A large HCV transmission network enabled a fast-growing HIV outbreak in rural Indiana, 2015.
Sumathi Ramachandran, Hong Thai, Joseph C Forbi, Romeo Regi Galang, Zoya Dimitrova, Guo-Liang Xia, Yulin Lin, Lili T Punkova, Pamela R Pontones, Jessica Gentry, Sara J Blosser, Judith Lovchik, William M Switzer, Eyasu Teshale, Philip Peters, John Ward, Yury Khudyakov, and
EBioMedicine 2018 Nov
Identifying Clusters of Recent and Rapid HIV Transmission Through Analysis of Molecular Surveillance Data.
Alexandra M Oster, Anne Marie France, Nivedha Panneer, M Cheryl Bañez Ocfemia, Ellsworth Campbell, Sharoda Dasgupta, William M Switzer, Joel O Wertheim, and Angela L Hernandez
Journal of acquired immune deficiency syndromes (1999) 2018 Dec 79(5) 543-550
Detailed Transmission Network Analysis of a Large Opiate-Driven Outbreak of HIV Infection in the United States.
Ellsworth M Campbell, Hongwei Jia, Anupama Shankar, Debra Hanson, Wei Luo, Silvina Masciotra, S Michele Owen, Alexandra M Oster, Romeo R Galang, Michael W Spiller, Sara J Blosser, Erika Chapman, Jeremy C Roseberry, Jessica Gentry, Pamela Pontones, Joan Duwve, Paula Peyrani, Ron M Kagan, Jeannette M Whitcomb, Philip J Peters, Walid Heneine, John T Brooks, and William M Switzer
The Journal of infectious diseases 2017 Oct
Zoonotic infection of Brazilian primate workers with New World simian foamy virus.
Cláudia P Muniz, Liliane T F Cavalcante, Hongwei Jia, HaoQiang Zheng, Shaohua Tang, Anderson M Augusto, Alcides Pissinatti, Luiz P Fedullo, André F Santos, Marcelo A Soares, and William M Switzer
PloS one 2017 12(9) e0184502
A non-invasive specimen collection method and a novel simian foamy virus (SFV) DNA quantification assay in New World primates reveal aspects of tissue tropism and improved SFV detection.
Cláudia P Muniz, HaoQiang Zheng, Hongwei Jia, Liliane T F Cavalcante, Anderson M Augusto, Luiz P Fedullo, Alcides Pissinatti, Marcelo A Soares, William M Switzer, and André F Santos
PloS one 2017 (9) e0184251
Transmission fitness of drug-resistant HIV revealed in a surveillance system transmission network.
Joel O Wertheim, Alexandra M Oster, Jeffrey A Johnson, William M Switzer, Neeraja Saduvala, Angela L Hernandez, H Irene Hall, and Walid Heneine
Virus evolution 2017 Jan 3(1) vex008
Increasing HIV-1 subtype diversity in seven states, United States, 2006-2013.
Alexandra M Oster, William M Switzer, Angela L Hernandez, Neeraja Saduvala, Joel O Wertheim, Ndidi Nwangwu-Ike, M Cheryl Ocfemia, Ellsworth Campbell, and H Irene Hall
Annals of epidemiology 2017 Feb
Bayesian inference reveals ancient origin of simian foamy virus in orangutans.
Michael J C Reid, William M Switzer, Michael A Schillaci, Amy R Klegarth, Ellsworth Campbell, Manon Ragonnet-Cronin, Isabelle Joanisse, Kyna Caminiti, Carl A Lowenberger, Birute Mary F Galdikas, Hope Hollocher, Paul A Sandstrom, and James I Brooks
Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2017 Mar
Development of neurologic diseases in a patient with primate T lymphotropic virus type 1 (PTLV-1).
Yoshimi Enose-Akahata, Breanna Caruso, Benjamin Haner, Emily Charlip, Govind Nair, Raya Massoud, Bridgette J Billioux, Joan Ohayon, William M Switzer, and Steven Jacobson
Retrovirology 13(1) 56
Detailed phylogenetic analysis of primate T-lymphotropic virus type 1 (PTLV-1) sequences from orangutans (Pongo pygmaeus) reveals new insights into the evolutionary history of PTLV-1 in Asia.
Michael J C Reid, William M Switzer, Michael A Schillaci, Manon Ragonnet-Cronin, Isabelle Joanisse, Kyna Caminiti, Carl A Lowenberger, Birute Mary F Galdikas, Paul A Sandstrom, and James I Brooks
Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2016 May
Origin and spread of HIV-1 in persons who inject drugs in Bulgaria.
Ivailo Alexiev, Anupama Shankar, Reneta Dimitrova, Anna Gancheva, Asia Kostadinova, Pavel Teoharov, Elitsa Golkocheva, Maria Nikolova, Mariya Muhtarova, Ivaylo Elenkov, Mariyana Stoycheva, Daniela Nikolova, Tonka Varleva, and William M Switzer
Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2016 May
TOP