CDC-Authored Genomics and Precision Health Publications Database

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Last data update: Feb 03, 2023. (Total: 4188 publications since 2011)

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Records 1-30 (of 45 Records)

Query Trace: all>>William M Switzer[CDC Author]
MicrobeTrace: Retooling molecular epidemiology for rapid public health response. Ellsworth M Campbell, Anthony Boyles, Anupama Shankar, Jay Kim, Sergey Knyazev, Roxana Cintron, and William M Switzer PLoS computational biology 2021 9 (9) e1009300 Similar articles in PubMed DOI:10.1371/journal.pcbi.1009300
Evolutionary history of orangutan plasmodia revealed by phylogenetic analysis of complete mtDNA genomes and new biogeographical divergence dating calibration models. Michael J C Reid, William M Switzer, Sabrina K Alonso, Carl A Lowenberger, and Michael A Schillaci American journal of primatology 2021 e23298 Similar articles in PubMed DOI:10.1002/ajp.23298
Accurate assembly of minority viral haplotypes from next-generation sequencing through efficient noise reduction. Sergey Knyazev, Viachaslau Tsyvina, Anupama Shankar, Andrew Melnyk, Alexander Artyomenko, Tatiana Malygina, Yuri B Porozov, Ellsworth M Campbell, William M Switzer, Pavel Skums, Serghei Mangul, and Alex Zelikovsky Nucleic acids research 2021 Similar articles in PubMed DOI:10.1093/nar/gkab576
The CDC HIV Outbreak Coordination Unit: Developing a Standardized, Collaborative Approach to HIV Outbreak Assessment and Response. Alexandra M Oster, Anne Marie France, Robert P McClung, Kate Buchacz, Sheryl B Lyss, Philip J Peters, Paul J Weidle, William M Switzer, Stanley A Phillip, John T Brooks, and Angela L Hernandez Public health reports (Washington, D.C. : 1974) 2021 333549211018678 Similar articles in PubMed DOI:10.1177/00333549211018678
Increasing Capacity to Detect Clusters of Rapid HIV Transmission in Varied Populations-United States. Alexandra M Oster, Nivedha Panneer, Sheryl B Lyss, R Paul McClung, Meg Watson, Neeraja Saduvala, M Cheryl Bañez Ocfemia, Laurie Linley, William M Switzer, Joel O Wertheim, Ellsworth Campbell, Angela L Hernandez, and Anne Marie France Viruses 2021 13(4) Similar articles in PubMed DOI:10.3390/v13040577
CD4 receptor diversity represents an ancient protection mechanism against primate lentiviruses. Ronnie M Russell, Frederic Bibollet-Ruche, Weimin Liu, Scott Sherrill-Mix, Yingying Li, Jesse Connell, Dorothy E Loy, Stephanie Trimboli, Andrew G Smith, Alexa N Avitto, Marcos V P Gondim, Lindsey J Plenderleith, Katherine S Wetzel, Ronald G Collman, Ahidjo Ayouba, Amandine Esteban, Martine Peeters, William J Kohler, Richard A Miller, Sandrine François-Souquiere, William M Switzer, Vanessa M Hirsch, Preston A Marx, Alex K Piel, Fiona A Stewart, Alexander V Georgiev, Volker Sommer, Paco Bertolani, John A Hart, Terese B Hart, George M Shaw, Paul M Sharp, and Beatrice H Hahn Proceedings of the National Academy of Sciences of the United States of America 2021 118(13) Similar articles in PubMed DOI:10.1073/pnas.2025914118
Human T-cell lymphotropic virus type 1 transmission dynamics in rural villages in the democratic republic of the congo with high nonhuman primate exposure. Megan Halbrook, Adva Gadoth, Anupama Shankar, HaoQiang Zheng, Ellsworth M Campbell, Nicole A Hoff, Jean-Jacques Muyembe, Emile Okitolonda Wemakoy, Anne W Rimoin, and William M Switzer PLoS neglected tropical diseases 2021 Jan 15(1) e0008923 Similar articles in PubMed DOI:10.1371/journal.pntd.0008923
Molecular Epidemiological Analysis of the Origin and Transmission Dynamics of the HIV-1 CRF01_AE Sub-Epidemic in Bulgaria. Ivailo Alexiev, Ellsworth M Campbell, Sergey Knyazev, Yi Pan, Lyubomira Grigorova, Reneta Dimitrova, Aleksandra Partsuneva, Anna Gancheva, Asya Kostadinova, Carole Seguin-Devaux, Ivaylo Elenkov, Nina Yancheva, and William M Switzer Viruses 2021 Jan 13(1) Similar articles in PubMed DOI:10.3390/v13010116
Identification of an HIV-1 and Neurosyphilis Cluster in Vermont. Devika Singh, William M Switzer, Roy Belcher, Daniel Daltry, and Jennifer S Read Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2020 Dec Similar articles in PubMed DOI:10.1093/cid/ciaa1834
Koala retrovirus diversity, transmissibility, and disease associations. HaoQiang Zheng, Yi Pan, Shaohua Tang, Geoffrey W Pye, Cynthia K Stadler, Larry Vogelnest, Kimberly Vinette Herrin, Bruce A Rideout, and William M Switzer Retrovirology 2020 Oct 17(1) 34 Similar articles in PubMed DOI:10.1186/s12977-020-00541-1
Human Immunodeficiency Virus (HIV) Outbreak Investigation Among Persons Who Inject Drugs in Massachusetts Enhanced by HIV Sequence Data. Matthew Tumpney, Betsey John, Nivedha Panneer, R Paul McClung, Ellsworth M Campbell, Kathleen Roosevelt, Alfred DeMaria, Kate Buchacz, William M Switzer, Sheryl Lyss, and Kevin Cranston The Journal of infectious diseases 2020 Sep 222(Supplement_5) S259-S267 Similar articles in PubMed DOI:10.1093/infdis/jiaa053
Employing Molecular Phylodynamic Methods to Identify and Forecast HIV Transmission Clusters in Public Health Settings: A Qualitative Study. Shannan N Rich, Veronica L Richards, Carla N Mavian, William M Switzer, Brittany Rife Magalis, Karalee Poschman, Shana Geary, Steven E Broadway, Spencer B Bennett, Jason Blanton, Thomas Leitner, J Lucas Boatwright, Nichole E Stetten, Robert L Cook, Emma C Spencer, Marco Salemi, and Mattia Prosperi Viruses 2020 Aug 12(9) Similar articles in PubMed DOI:10.3390/v12090921
Complete Genome Sequence of a Baboon Simian Foamy Virus Isolated from an Infected Human. Anupama Shankar, Vedapuri Shanmugam, and William M Switzer Microbiology resource announcements 2020 Jul 9(27) Similar articles in PubMed DOI:10.1128/MRA.00522-20
Using an Established Outbreak Response Plan and Molecular Epidemiology Methods in an HIV Transmission Cluster Investigation, Tennessee, January-June 2017. Lindsey Sizemore, Mary-Margaret Fill, Samantha A Mathieson, Jennifer Black, Meredith Brantley, Kelly Cooper, Joy Garrett, William M Switzer, Philip J Peters, and Carolyn Wester Public health reports (Washington, D.C. : 1974) 2020 Mar 33354920915445 Similar articles in PubMed DOI:10.1177/0033354920915445
Phylodynamic Analysis Complements Partner Services by Identifying Acute and Unreported HIV Transmission. Ellsworth M Campbell, Anne Patala, Anupama Shankar, Jin-Fen Li, Jeffrey A Johnson, Emily Westheimer, Cynthia L Gay, Stephanie E Cohen, William M Switzer, and Philip J Peters Viruses 2020 Jan (2) Similar articles in PubMed DOI:10.3390/v12020145
Natural selection favoring more transmissible HIV detected in United States molecular transmission network. Joel O Wertheim, Alexandra M Oster, William M Switzer, Chenhua Zhang, Nivedha Panneer, Ellsworth Campbell, Neeraja Saduvala, Jeffrey A Johnson, and Walid Heneine Nature communications 2019 Dec (1) 5788 Similar articles in PubMed DOI:10.1038/s41467-019-13723-z
Molecular Analysis of the Complete Genome of a Simian Foamy Virus Infecting Hylobates pileatus (pileated gibbon) Reveals Ancient Co-Evolution with Lesser Apes. Anupama Shankar, Samuel D Sibley, Tony L Goldberg, and William M Switzer Viruses 2019 Jul (7) Similar articles in PubMed DOI:10.3390/v11070605
Genome-wide patterns of gene expression in a wild primate indicate species-specific mechanisms associated with tolerance to natural simian immunodeficiency virus infection. Noah D Simons, Geeta N Eick, Maria J Ruiz-Lopez, David Hyeroba, Patrick A Omeja, Geoffrey Weny, Colin A Chapman, Tony L Goldberg, HaoQiang Zheng, Anupama Shankar, William M Switzer, Simon D W Frost, James H Jones, Kirstin N Sterner, and Nelson Ting Genome biology and evolution 2019 May Similar articles in PubMed DOI:10.1093/gbe/evz099
Clinical and Molecular Features of Feline Foamy Virus and Feline Leukemia Virus Co-Infection in Naturally-Infected Cats. Liliane T F Cavalcante, Cláudia P Muniz, Hongwei Jia, Anderson M Augusto, Fernando Troccoli, Sheila de O Medeiros, Carlos G A Dias, William M Switzer, Marcelo A Soares, and André F Santos Viruses 2018 Dec 10(12) Similar articles in PubMed DOI:10.3390/v10120702
Maintenance and reappearance of extremely divergent intra-host HIV-1 variants. Joel O Wertheim, Alexandra M Oster, Ben Murrell, Neeraja Saduvala, Walid Heneine, William M Switzer, and Jeffrey A Johnson Virus evolution 2018 Jul (2) vey030 Similar articles in PubMed DOI:10.1093/ve/vey030
A large HCV transmission network enabled a fast-growing HIV outbreak in rural Indiana, 2015. Sumathi Ramachandran, Hong Thai, Joseph C Forbi, Romeo Regi Galang, Zoya Dimitrova, Guo-Liang Xia, Yulin Lin, Lili T Punkova, Pamela R Pontones, Jessica Gentry, Sara J Blosser, Judith Lovchik, William M Switzer, Eyasu Teshale, Philip Peters, John Ward, Yury Khudyakov, and EBioMedicine 2018 Nov Similar articles in PubMed DOI:10.1016/j.ebiom.2018.10.007
Identifying Clusters of Recent and Rapid HIV Transmission Through Analysis of Molecular Surveillance Data. Alexandra M Oster, Anne Marie France, Nivedha Panneer, M Cheryl Bañez Ocfemia, Ellsworth Campbell, Sharoda Dasgupta, William M Switzer, Joel O Wertheim, and Angela L Hernandez Journal of acquired immune deficiency syndromes (1999) 2018 Dec 79(5) 543-550 Similar articles in PubMed DOI:10.1097/QAI.0000000000001856
Detailed Transmission Network Analysis of a Large Opiate-Driven Outbreak of HIV Infection in the United States. Ellsworth M Campbell, Hongwei Jia, Anupama Shankar, Debra Hanson, Wei Luo, Silvina Masciotra, S Michele Owen, Alexandra M Oster, Romeo R Galang, Michael W Spiller, Sara J Blosser, Erika Chapman, Jeremy C Roseberry, Jessica Gentry, Pamela Pontones, Joan Duwve, Paula Peyrani, Ron M Kagan, Jeannette M Whitcomb, Philip J Peters, Walid Heneine, John T Brooks, and William M Switzer The Journal of infectious diseases 2017 Oct Similar articles in PubMed DOI:10.1093/infdis/jix307
Zoonotic infection of Brazilian primate workers with New World simian foamy virus. Cláudia P Muniz, Liliane T F Cavalcante, Hongwei Jia, HaoQiang Zheng, Shaohua Tang, Anderson M Augusto, Alcides Pissinatti, Luiz P Fedullo, André F Santos, Marcelo A Soares, and William M Switzer PloS one 2017 12(9) e0184502 Similar articles in PubMed DOI:10.1371/journal.pone.0184502
A non-invasive specimen collection method and a novel simian foamy virus (SFV) DNA quantification assay in New World primates reveal aspects of tissue tropism and improved SFV detection. Cláudia P Muniz, HaoQiang Zheng, Hongwei Jia, Liliane T F Cavalcante, Anderson M Augusto, Luiz P Fedullo, Alcides Pissinatti, Marcelo A Soares, William M Switzer, and André F Santos PloS one 2017 (9) e0184251 Similar articles in PubMed DOI:10.1371/journal.pone.0184251
Transmission fitness of drug-resistant HIV revealed in a surveillance system transmission network. Joel O Wertheim, Alexandra M Oster, Jeffrey A Johnson, William M Switzer, Neeraja Saduvala, Angela L Hernandez, H Irene Hall, and Walid Heneine Virus evolution 2017 Jan 3(1) vex008 Similar articles in PubMed DOI:10.1093/ve/vex008
Increasing HIV-1 subtype diversity in seven states, United States, 2006-2013. Alexandra M Oster, William M Switzer, Angela L Hernandez, Neeraja Saduvala, Joel O Wertheim, Ndidi Nwangwu-Ike, M Cheryl Ocfemia, Ellsworth Campbell, and H Irene Hall Annals of epidemiology 2017 Feb Similar articles in PubMed DOI:10.1016/j.annepidem.2017.02.002
Bayesian inference reveals ancient origin of simian foamy virus in orangutans. Michael J C Reid, William M Switzer, Michael A Schillaci, Amy R Klegarth, Ellsworth Campbell, Manon Ragonnet-Cronin, Isabelle Joanisse, Kyna Caminiti, Carl A Lowenberger, Birute Mary F Galdikas, Hope Hollocher, Paul A Sandstrom, and James I Brooks Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2017 Mar Similar articles in PubMed DOI:10.1016/j.meegid.2017.03.003
Development of neurologic diseases in a patient with primate T lymphotropic virus type 1 (PTLV-1). Yoshimi Enose-Akahata, Breanna Caruso, Benjamin Haner, Emily Charlip, Govind Nair, Raya Massoud, Bridgette J Billioux, Joan Ohayon, William M Switzer, and Steven Jacobson Retrovirology 13(1) 56 Similar articles in PubMed DOI:10.1186/s12977-016-0290-9
Detailed phylogenetic analysis of primate T-lymphotropic virus type 1 (PTLV-1) sequences from orangutans (Pongo pygmaeus) reveals new insights into the evolutionary history of PTLV-1 in Asia. Michael J C Reid, William M Switzer, Michael A Schillaci, Manon Ragonnet-Cronin, Isabelle Joanisse, Kyna Caminiti, Carl A Lowenberger, Birute Mary F Galdikas, Paul A Sandstrom, and James I Brooks Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2016 May Similar articles in PubMed DOI:10.1016/j.meegid.2016.05.036