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CDC-Authored Genomics and Precision Health Publications Database|Home|PHGKB

CDC-Authored Genomics and Precision Health Publications Database


Last data update: Oct 23, 2020. (Total: 2984 publications since 2011)
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Records 1-30 (of 39 Records)
Query Trace: all>>William M Switzer[CDC Author]
Koala retrovirus diversity, transmissibility, and disease associations.
HaoQiang Zheng, Yi Pan, Shaohua Tang, Geoffrey W Pye, Cynthia K Stadler, Larry Vogelnest, Kimberly Vinette Herrin, Bruce A Rideout, and William M Switzer
Retrovirology 2020 Oct 17(1) 34
Human Immunodeficiency Virus (HIV) Outbreak Investigation Among Persons Who Inject Drugs in Massachusetts Enhanced by HIV Sequence Data.
Matthew Tumpney, Betsey John, Nivedha Panneer, R Paul McClung, Ellsworth M Campbell, Kathleen Roosevelt, Alfred DeMaria, Kate Buchacz, William M Switzer, Sheryl Lyss, and Kevin Cranston
The Journal of infectious diseases 2020 Sep 222(Supplement_5) S259-S267
Employing Molecular Phylodynamic Methods to Identify and Forecast HIV Transmission Clusters in Public Health Settings: A Qualitative Study.
Shannan N Rich, Veronica L Richards, Carla N Mavian, William M Switzer, Brittany Rife Magalis, Karalee Poschman, Shana Geary, Steven E Broadway, Spencer B Bennett, Jason Blanton, Thomas Leitner, J Lucas Boatwright, Nichole E Stetten, Robert L Cook, Emma C Spencer, Marco Salemi, and Mattia Prosperi
Viruses 2020 Aug 12(9)
Complete Genome Sequence of a Baboon Simian Foamy Virus Isolated from an Infected Human.
Anupama Shankar, Vedapuri Shanmugam, and William M Switzer
Microbiology resource announcements 2020 Jul 9(27)
Using an Established Outbreak Response Plan and Molecular Epidemiology Methods in an HIV Transmission Cluster Investigation, Tennessee, January-June 2017.
Lindsey Sizemore, Mary-Margaret Fill, Samantha A Mathieson, Jennifer Black, Meredith Brantley, Kelly Cooper, Joy Garrett, William M Switzer, Philip J Peters, and Carolyn Wester
Public health reports (Washington, D.C. : 1974) 2020 Mar 33354920915445
Investigation of Presumptive HIV Transmission Associated with Hospitalization Using Nucleotide Sequence Analysis - New York, 2017.
Bridget J Anderson, Ernest Clement, Randall Collura, Abigail Gallucci, Emily Westheimer, Sarah Braunstein, Karen Southwick, Eleanor Adams, Emily Lutterloh, Charles Gonzalez, Robert McDonald, Hongwei Jia, William M Switzer, Priti R Patel, M Patricia Joyce, and Alexandra M Oster
MMWR. Morbidity and mortality weekly report 2020 Mar (10) 260-264
Phylodynamic Analysis Complements Partner Services by Identifying Acute and Unreported HIV Transmission.
Ellsworth M Campbell, Anne Patala, Anupama Shankar, Jin-Fen Li, Jeffrey A Johnson, Emily Westheimer, Cynthia L Gay, Stephanie E Cohen, William M Switzer, and Philip J Peters
Viruses 2020 Jan (2)
Natural selection favoring more transmissible HIV detected in United States molecular transmission network.
Joel O Wertheim, Alexandra M Oster, William M Switzer, Chenhua Zhang, Nivedha Panneer, Ellsworth Campbell, Neeraja Saduvala, Jeffrey A Johnson, and Walid Heneine
Nature communications 2019 Dec (1) 5788
Molecular Analysis of the Complete Genome of a Simian Foamy Virus Infecting Hylobates pileatus (pileated gibbon) Reveals Ancient Co-Evolution with Lesser Apes.
Anupama Shankar, Samuel D Sibley, Tony L Goldberg, and William M Switzer
Viruses 2019 Jul (7)
Genome-wide patterns of gene expression in a wild primate indicate species-specific mechanisms associated with tolerance to natural simian immunodeficiency virus infection.
Noah D Simons, Geeta N Eick, Maria J Ruiz-Lopez, David Hyeroba, Patrick A Omeja, Geoffrey Weny, Colin A Chapman, Tony L Goldberg, HaoQiang Zheng, Anupama Shankar, William M Switzer, Simon D W Frost, James H Jones, Kirstin N Sterner, and Nelson Ting
Genome biology and evolution 2019 May
Clinical and Molecular Features of Feline Foamy Virus and Feline Leukemia Virus Co-Infection in Naturally-Infected Cats.
Liliane T F Cavalcante, Cláudia P Muniz, Hongwei Jia, Anderson M Augusto, Fernando Troccoli, Sheila de O Medeiros, Carlos G A Dias, William M Switzer, Marcelo A Soares, and André F Santos
Viruses 2018 Dec 10(12)
Maintenance and reappearance of extremely divergent intra-host HIV-1 variants.
Joel O Wertheim, Alexandra M Oster, Ben Murrell, Neeraja Saduvala, Walid Heneine, William M Switzer, and Jeffrey A Johnson
Virus evolution 2018 Jul (2) vey030
A large HCV transmission network enabled a fast-growing HIV outbreak in rural Indiana, 2015.
Sumathi Ramachandran, Hong Thai, Joseph C Forbi, Romeo Regi Galang, Zoya Dimitrova, Guo-Liang Xia, Yulin Lin, Lili T Punkova, Pamela R Pontones, Jessica Gentry, Sara J Blosser, Judith Lovchik, William M Switzer, Eyasu Teshale, Philip Peters, John Ward, Yury Khudyakov, and
EBioMedicine 2018 Nov
Identifying Clusters of Recent and Rapid HIV Transmission Through Analysis of Molecular Surveillance Data.
Alexandra M Oster, Anne Marie France, Nivedha Panneer, M Cheryl Bañez Ocfemia, Ellsworth Campbell, Sharoda Dasgupta, William M Switzer, Joel O Wertheim, and Angela L Hernandez
Journal of acquired immune deficiency syndromes (1999) 2018 Dec 79(5) 543-550
Detailed Transmission Network Analysis of a Large Opiate-Driven Outbreak of HIV Infection in the United States.
Ellsworth M Campbell, Hongwei Jia, Anupama Shankar, Debra Hanson, Wei Luo, Silvina Masciotra, S Michele Owen, Alexandra M Oster, Romeo R Galang, Michael W Spiller, Sara J Blosser, Erika Chapman, Jeremy C Roseberry, Jessica Gentry, Pamela Pontones, Joan Duwve, Paula Peyrani, Ron M Kagan, Jeannette M Whitcomb, Philip J Peters, Walid Heneine, John T Brooks, and William M Switzer
The Journal of infectious diseases 2017 Oct
Zoonotic infection of Brazilian primate workers with New World simian foamy virus.
Cláudia P Muniz, Liliane T F Cavalcante, Hongwei Jia, HaoQiang Zheng, Shaohua Tang, Anderson M Augusto, Alcides Pissinatti, Luiz P Fedullo, André F Santos, Marcelo A Soares, and William M Switzer
PloS one 2017 12(9) e0184502
A non-invasive specimen collection method and a novel simian foamy virus (SFV) DNA quantification assay in New World primates reveal aspects of tissue tropism and improved SFV detection.
Cláudia P Muniz, HaoQiang Zheng, Hongwei Jia, Liliane T F Cavalcante, Anderson M Augusto, Luiz P Fedullo, Alcides Pissinatti, Marcelo A Soares, William M Switzer, and André F Santos
PloS one 2017 (9) e0184251
Transmission fitness of drug-resistant HIV revealed in a surveillance system transmission network.
Joel O Wertheim, Alexandra M Oster, Jeffrey A Johnson, William M Switzer, Neeraja Saduvala, Angela L Hernandez, H Irene Hall, and Walid Heneine
Virus evolution 2017 Jan 3(1) vex008
Increasing HIV-1 subtype diversity in seven states, United States, 2006-2013.
Alexandra M Oster, William M Switzer, Angela L Hernandez, Neeraja Saduvala, Joel O Wertheim, Ndidi Nwangwu-Ike, M Cheryl Ocfemia, Ellsworth Campbell, and H Irene Hall
Annals of epidemiology 2017 Feb
Bayesian inference reveals ancient origin of simian foamy virus in orangutans.
Michael J C Reid, William M Switzer, Michael A Schillaci, Amy R Klegarth, Ellsworth Campbell, Manon Ragonnet-Cronin, Isabelle Joanisse, Kyna Caminiti, Carl A Lowenberger, Birute Mary F Galdikas, Hope Hollocher, Paul A Sandstrom, and James I Brooks
Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2017 Mar
Development of neurologic diseases in a patient with primate T lymphotropic virus type 1 (PTLV-1).
Yoshimi Enose-Akahata, Breanna Caruso, Benjamin Haner, Emily Charlip, Govind Nair, Raya Massoud, Bridgette J Billioux, Joan Ohayon, William M Switzer, and Steven Jacobson
Retrovirology 13(1) 56
HIV Infection Linked to Injection Use of Oxymorphone in Indiana, 2014-2015.
Philip J Peters, Pamela Pontones, Karen W Hoover, Monita R Patel, Romeo R Galang, Jessica Shields, Sara J Blosser, Michael W Spiller, Brittany Combs, William M Switzer, Caitlin Conrad, Jessica Gentry, Yury Khudyakov, Dorothy Waterhouse, S Michele Owen, Erika Chapman, Jeremy C Roseberry, Veronica McCants, Paul J Weidle, Dita Broz, Taraz Samandari, Jonathan Mermin, Jennifer Walthall, John T Brooks, Joan M Duwve, and
The New England journal of medicine 2016 Jul 375(3) 229-39
Detailed phylogenetic analysis of primate T-lymphotropic virus type 1 (PTLV-1) sequences from orangutans (Pongo pygmaeus) reveals new insights into the evolutionary history of PTLV-1 in Asia.
Michael J C Reid, William M Switzer, Michael A Schillaci, Manon Ragonnet-Cronin, Isabelle Joanisse, Kyna Caminiti, Carl A Lowenberger, Birute Mary F Galdikas, Paul A Sandstrom, and James I Brooks
Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2016 May
Origin and spread of HIV-1 in persons who inject drugs in Bulgaria.
Ivailo Alexiev, Anupama Shankar, Reneta Dimitrova, Anna Gancheva, Asia Kostadinova, Pavel Teoharov, Elitsa Golkocheva, Maria Nikolova, Mariya Muhtarova, Ivaylo Elenkov, Mariyana Stoycheva, Daniela Nikolova, Tonka Varleva, and William M Switzer
Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2016 May
An expanded search for simian foamy viruses (SFV) in Brazilian New World primates identifies novel SFV lineages and host age-related infections.
Cláudia P Muniz, Hongwei Jia, Anupama Shankar, Lian L Troncoso, Anderson M Augusto, Elisabete Farias, Alcides Pissinatti, Luiz P Fedullo, André F Santos, Marcelo A Soares, and William M Switzer
Retrovirology 2015 12(1) 94
A re-evaluation of the origin of hepatitis C virus genotype 2 in West Africa.
Michael A Purdy, Joseph C Forbi, Amanda Sue, Jennifer E Layden, William M Switzer, Ohene K Opare-Sem, Richard O Phillips, and Yury E Khudyakov
J. Gen. Virol. 2015 Aug (8) 2157-64
Genomic resources notes accepted 1 December 2014 - 31 January 2015.
, Simon Blanchet, Olivier Bouchez, Colin A Chapman, Paul D Etter, Tony L Goldberg, Eric A Johnson, James H Jones, Géraldine Loot, Patrick A Omeja, Olivier Rey, Maria Jose Ruiz-Lopez, William M Switzer, and Nelson Ting
Mol Ecol Resour 2015 May 15(3) 684
Absence of giant blood Marseille-like virus DNA detection by polymerase chain reaction in plasma from healthy US blood donors and serum from multiply transfused patients from Cameroon.
Tung Gia Phan, Christelle Desnues, William M Switzer, Cyrille F Djoko, Bradley S Schneider, Xutao Deng, and Eric Delwart
Transfusion 2015 Jun 55(6) 1256-62
Discovery of prosimian and afrotherian foamy viruses and potential cross species transmissions amidst stable and ancient mammalian co-evolution.
Aris Katzourakis, Pakorn Aiewsakun, Hongwei Jia, Nathan D Wolfe, Matthew LeBreton, Anne D Yoder, and William M Switzer
Retrovirology 2014 1161
Discovery and full genome characterization of a new SIV lineage infecting red-tailed guenons (Cercopithecus ascanius schmidti) in Kibale National Park, Uganda.
Michael Lauck, William M Switzer, Samuel D Sibley, David Hyeroba, Alex Tumukunde, Geoffrey Weny, Anupama Shankar, Justin M Greene, Adam J Ericsen, HaoQiang Zheng, Nelson Ting, Colin A Chapman, Thomas C Friedrich, Tony L Goldberg, and David H O'Connor
Retrovirology 2014 55
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