Last data update: Feb 24, 2021. (Total: 3169 publications since 2011)
|Query Trace: all>>Alex Zelikovsky[CDC Author]|
| Quantitative differences between intra-host HCV populations from persons with recently established and persistent infections.
Pelin B Icer Baykal, James Lara, Yury Khudyakov, Alex Zelikovsky, and Pavel Skums
Virus evolution 2021 Jan 7(1) veaa103
| Fast estimation of genetic relatedness between members of heterogeneous populations of closely related genomic variants.
Viachaslau Tsyvina, David S Campo, Seth Sims, Alex Zelikovsky, Yury Khudyakov, and Pavel Skums
BMC bioinformatics 2018 Oct (Suppl 11) 360
| QUENTIN: reconstruction of disease transmissions from viral quasispecies genomic data.
Pavel Skums, Alex Zelikovsky, Rahul Singh, Walker Gussler, Zoya Dimitrova, Sergey Knyazev, Igor Mandric, Sumathi Ramachandran, David Campo, Deeptanshu Jha, Leonid Bunimovich, Elizabeth Costenbader, Connie Sexton, Siobhan O'Connor, Guo-Liang Xia, and Yury Khudyakov
Bioinformatics (Oxford, England) 2018 Jan (1) 163-170
| Inference of genetic relatedness between viral quasispecies from sequencing data.
Olga Glebova, Sergey Knyazev, Andrew Melnyk, Alexander Artyomenko, Yury Khudyakov, Alex Zelikovsky, and Pavel Skums
BMC genomics 2017 Dec (Suppl 10) 918
| Computational framework for next-generation sequencing of heterogeneous viral populations using combinatorial pooling.
Pavel Skums, Alexander Artyomenko, Olga Glebova, Sumathi Ramachandran, Ion Mandoiu, David S Campo, Zoya Dimitrova, Alex Zelikovsky, and Yury Khudyakov
Bioinformatics 2015 Mar 1. (5) 682-90
| Reconstruction of viral population structure from next-generation sequencing data using multicommodity flows.
Pavel Skums, Nicholas Mancuso, Alexander Artyomenko, Bassam Tork, Ion Mandoiu, Yury Khudyakov, and Alex Zelikovsky
BMC bioinformatics 2013 14 Suppl 9S2
| Efficient error correction for next-generation sequencing of viral amplicons.
Pavel Skums, Zoya Dimitrova, David S Campo, Gilberto Vaughan, Livia Rossi, Joseph C Forbi, Jonny Yokosawa, Alex Zelikovsky, and Yury Khudyakov
BMC bioinformatics 2012 Jun 13 Suppl 10S6