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Public Health Genomics and Precision Health Knowledge Base (v7.7)
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CDC-Authored Genomics and Precision Health Publications Database|Home|PHGKB
CDC-Authored Genomics and Precision Health Publications Database
Last data update: May 24, 2022
. (Total: 3846 publications since 2011)
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Records 1-30 (of 37 Records)
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all>>Mili Sheth[CDC Author]
SARS-CoV-2 Delta-Omicron Recombinant Viruses, United States.
Kristine A Lacek
,
Benjamin L Rambo-Martin
, Dhwani Batra, Xiao-Yu Zheng,
Norman Hassell
, Hitoshi Sakaguchi, Thomas Peacock, Natalie Groves,
Matthew Keller
,
Malania M Wilson
,
Mili Sheth
,
Morgan L Davis
, Mark Borroughs,
Jonathan Gerhart
,
Samuel S Shepard
,
Peter W Cook
,
Justin Lee
,
David E Wentworth
,
John R Barnes
,
Rebecca Kondor
, and
Clinton R Paden
Emerging infectious diseases 2022 28(7)
Similar articles in PubMed
DOI:
10.3201/eid2807.220526
Selective Whole-Genome Amplification as a Tool to Enrich Specimens with Low Treponema pallidum Genomic DNA Copies for Whole-Genome Sequencing.
Charles M Thurlow
,
Sandeep J Joseph
,
Lilia Ganova-Raeva
,
Samantha S Katz
,
Lara Pereira
,
Cheng Chen
,
Alyssa Debra
,
Kendra Vilfort
, Kimberly Workowski, Stephanie E Cohen, Hilary Reno,
Yongcheng Sun
,
Mark Burroughs
,
Mili Sheth
,
Kai-Hua Chi
,
Damien Danavall
, Susan S Philip,
Weiping Cao
,
Ellen N Kersh
, and
Allan Pillay
mSphere 2022 e0000922
Similar articles in PubMed
DOI:
10.1128/msphere.00009-22
Sentinel Surveillance Reveals Emerging Daptomycin-Resistant ST736 Enterococcus faecium and Multiple Mechanisms of Linezolid Resistance in Enterococci in the United States.
Amy S Gargis
, Lori M Spicer, Alyssa G Kent,
Wenming Zhu
,
Davina Campbell
,
Gillian McAllister
, Thomas O Ewing,
Valerie Albrecht
,
Valerie A Stevens
,
Mili Sheth
, Jasmine Padilla,
Dhwani Batra
, J Kristie Johnson,
Alison Laufer Halpin
,
J Kamile Rasheed
,
Christopher A Elkins
,
Maria Karlsson
, and
Joseph D Lutgring
Frontiers in microbiology 2022 12807398
Similar articles in PubMed
DOI:
10.3389/fmicb.2021.807398
Analysis of the initial lot of the CDC 2019-Novel Coronavirus (2019-nCoV) real-time RT-PCR diagnostic panel.
Justin S Lee
,
Jason M Goldstein
,
Jonathan L Moon
,
Owen Herzegh
,
Dennis A Bagarozzi
,
M Steven Oberste
,
Heather Hughes
,
Kanwar Bedi
,
Dorothie Gerard
,
Brenique Cameron
,
Christopher Benton
,
Asiya Chida
,
Ausaf Ahmad
,
David J Petway
,
Xiaoling Tang
,
Nicky Sulaiman
,
Dawit Teklu
,
Dhwani Batra
,
Dakota Howard
,
Mili Sheth
,
Wendi Kuhnert
,
Stephanie R Bialek
,
Christina L Hutson
,
Jan Pohl
, and
Darin S Carroll
PloS one 2021 16(12) e0260487
Similar articles in PubMed
DOI:
10.1371/journal.pone.0260487
Comprehensive characterization of internal and cuticle surface microbiota of laboratory-reared F Anopheles albimanus originating from different sites.
Nsa Dada, Ana Cristina Benedict, Francisco López, Juan C Lol,
Mili Sheth
,
Nicole Dzuris
, Norma Padilla, and
Audrey Lenhart
Malaria journal 2021 20(1) 414
Similar articles in PubMed
DOI:
10.1186/s12936-021-03934-5
Chromosome-Level Genome Sequence of Leishmania (Leishmania) tropica Strain CDC216-162, Isolated from an Afghanistan Clinical Case.
Yvette Unoarumhi,
Dhwani Batra
,
Mili Sheth
, Vidhya Narayanan, Wuling Lin, Yueli Zheng,
Lori A Rowe
,
Jan Pohl
, and
Marcos de Almeida
Microbiology resource announcements 2021 10(20)
Similar articles in PubMed
DOI:
10.1128/MRA.00842-20
Draft Chromosome Sequences of a Clinical Isolate of the Free-Living Ameba Naegleria fowleri.
Ibne Karim M Ali
, Alyssa Kelley,
Sandeep J Joseph
, Subin Park,
Shantanu Roy
, Jonathan Jackson,
Jennifer R Cope
,
Lori A Rowe
,
Mark Burroughs
,
Mili Sheth
,
Dhwani Batra
, and
Vladimir Loparev
Microbiology resource announcements 2021 10(15)
Similar articles in PubMed
DOI:
10.1128/MRA.01034-20
Development of a new barcode-based, multiplex-PCR, next-generation-sequencing assay and data processing and analytical pipeline for multiplicity of infection detection of Plasmodium falciparum.
Rebecca M Mitchell,
Zhiyong Zhou
,
Mili Sheth
,
Sheila Sergent
,
Michael Frace
,
Vishal Nayak
,
Bin Hu
,
John Gimnig
, Feiko ter Kuile,
Kim Lindblade
,
Laurence Slutsker
,
Mary J Hamel
,
Meghna Desai
, Kephas Otieno, Simon Kariuki, Ymir Vigfusson, and
Ya Ping Shi
Malaria journal 2021 Feb 20(1) 92
Similar articles in PubMed
DOI:
10.1186/s12936-021-03624-2
Western Kenyan Anopheles gambiae showing intense permethrin resistance harbour distinct microbiota.
Diana Omoke, Mathew Kipsum, Samson Otieno, Edward Esalimba,
Mili Sheth
,
Audrey Lenhart
, Ezekiel Mugendi Njeru, Eric Ochomo, and Nsa Dada
Malaria journal 2021 Feb 20(1) 77
Similar articles in PubMed
DOI:
10.1186/s12936-021-03606-4
Genomic Diversity of Burkholderia pseudomallei in Ceara, Brazil.
Jay E Gee
,
Christopher A Gulvik
, Debora S C M Castelo-Branco, José J C Sidrim, Marcos F G Rocha, Rossana A Cordeiro, Raimunda S N Brilhante, Tereza J P G Bandeira, Iracema Patrício, Lucas P Alencar, Ana Karoline da Costa Ribeiro,
Mili Sheth
,
Mark A Deka
,
Alex R Hoffmaster
, and Dionne Rolim
mSphere 2021 6(1)
Similar articles in PubMed
DOI:
10.1128/mSphere.01259-20
Division of the genus Chryseobacterium: Observation of discontinuities in amino acid identity values, a possible consequence of major extinction events, guides transfer of nine species to the genus Epilithonimonas , eleven species to the genus Kaistella , and three species to the genus Halpernia gen. nov., with description of Kaistella daneshvariae sp. nov. and Epilithonimonas vandammei sp. nov. derived from clinical specimens.
Ainsley C Nicholson
,
Christopher A Gulvik
,
Anne M Whitney
,
Ben W Humrighouse
,
Melissa E Bell
, Barry Holmes,
Arnie G Steigerwalt
,
Aaron Villarma
,
Mili Sheth
,
Dhwani Batra
,
Lori A Rowe
,
Mark Burroughs
,
Jessica C Pryor
, Jean-François Bernardet, Celia Hugo, Peter Kämpfer, Jeffrey D Newman, and
John R McQuiston
International journal of systematic and evolutionary microbiology 2020 Jan
Similar articles in PubMed
DOI:
10.1099/ijsem.0.003935
Understanding the Emergence of Multidrug-Resistant Candida : Using Whole-Genome Sequencing to Describe the Population Structure of Candida haemulonii Species Complex.
Lalitha Gade
, Jose F Muñoz,
Mili Sheth
, Darlene Wagner,
Elizabeth L Berkow
,
Kaitlin Forsberg
,
Brendan R Jackson
, Ruben Ramos-Castro, Patricia Escandón, Maribel Dolande, Ronen Ben-Ami,
Andrés Espinosa-Bode
, Diego H Caceres,
Shawn R Lockhart
, Christina A Cuomo, and
Anastasia P Litvintseva
Frontiers in genetics 2020 11554
Similar articles in PubMed
DOI:
10.3389/fgene.2020.00554
Conserved Patterns of Symmetric Inversion in the Genome Evolution of Bordetella Respiratory Pathogens.
Michael R Weigand
,
Yanhui Peng
,
Dhwani Batra
,
Mark Burroughs
,
Jamie K Davis
,
Kristen Knipe
,
Vladimir N Loparev
,
Taccara Johnson
,
Phalasy Juieng
,
Lori A Rowe
,
Mili Sheth
,
Kevin Tang
,
Yvette Unoarumhi
,
Margaret M Williams
, and
M Lucia Tondella
mSystems 2019 Nov (6)
Similar articles in PubMed
DOI:
10.1128/mSystems.00702-19
Pyrethroid exposure alters internal and cuticle surface bacterial communities in Anopheles albimanus.
Nsa Dada, Juan C Lol, Ana Cristina Benedict, Francisco López,
Mili Sheth
,
Nicole Dzuris
, Norma Padilla, and
Audrey Lenhart
The ISME journal 2019 Jun
Similar articles in PubMed
DOI:
10.1038/s41396-019-0445-5
Draft Genome Sequences of Leishmania ( Leishmania ) amazonensis , Leishmania ( Leishmania ) mexicana , and Leishmania ( Leishmania ) aethiopica , Potential Etiological Agents of Diffuse Cutaneous Leishmaniasis.
Dhwani Batra
, Wuling Lin, Vidhya Narayanan,
Lori A Rowe
,
Mili Sheth
, Yueli Zheng,
Vladimir Loparev
, and
Marcos de Almeida
Microbiology resource announcements 2019 May (20)
Similar articles in PubMed
DOI:
10.1128/MRA.00269-19
First Draft Genome Sequence of Leishmania (Viannia) lainsoni Strain 216-34, Isolated from a Peruvian Clinical Case.
Wuling Lin,
Dhwani Batra
, Vidhya Narayanan,
Lori A Rowe
,
Mili Sheth
, Yueli Zheng,
Phalasy Juieng
,
Vladimir Loparev
, and
Marcos de Almeida
Microbiology resource announcements 2019 Feb (6)
Similar articles in PubMed
DOI:
10.1128/MRA.01524-18
Draft Genome Sequence of French Guiana Leishmania ( Viannia ) guyanensis Strain 204-365, Assembled Using Long Reads.
Dhwani Batra
, Wuling Lin,
Lori A Rowe
,
Mili Sheth
, Yueli Zheng,
Vladimir Loparev
, and
Marcos de Almeida
Microbiology resource announcements 2018 Dec (23)
Similar articles in PubMed
DOI:
10.1128/MRA.01421-18
PacBio Genome Sequences of Escherichia coli Serotype O157:H7, Diffusely Adherent E. coli , and Salmonella enterica Strains, All Carrying Plasmids with an mcr-1 Resistance Gene.
Rebecca L Lindsey
,
Dhwani Batra
, Peyton Smith, Pooja N Patel, Kaitlin A Tagg, Lisley Garcia-Toledo,
Vladimir N Loparev
,
Phalasy Juieng
,
Mili Sheth
, Yoo Jin Joung, and
Lori A Rowe
Microbiology resource announcements 2018 (14)
Similar articles in PubMed
DOI:
10.1128/MRA.01025-18
Restriction enzyme digestion of host DNA enhances universal detection of parasitic pathogens in blood via targeted amplicon deep sequencing.
Briana R Flaherty,
Eldin Talundzic
, Joel Barratt,
Kristine J Kines
, Christian Olsen, Meredith Lane,
Mili Sheth
, and
Richard S Bradbury
Microbiome 2018 Sep (1) 164
Similar articles in PubMed
DOI:
10.1186/s40168-018-0540-2
The draft genomes of Elizabethkingia anophelis of equine origin are genetically similar to three isolates from human clinical specimens.
William L Johnson, Akhilesh Ramachandran, Nathanial J Torres,
Ainsley C Nicholson
,
Anne M Whitney
,
Melissa Bell
,
Aaron Villarma
,
Ben W Humrighouse
,
Mili Sheth
, Scot E Dowd,
John R McQuiston
, and John E Gustafson
PloS one 2018 13(7) e0200731
Similar articles in PubMed
DOI:
10.1371/journal.pone.0200731
Whole metagenome sequencing reveals links between mosquito microbiota and insecticide resistance in malaria vectors.
Nsa Dada,
Mili Sheth
, Kelly Liebman, Jesus Pinto, and
Audrey Lenhart
Scientific reports 2018 Feb 8(1) 2084
Similar articles in PubMed
DOI:
10.1038/s41598-018-20367-4
Screening and genomic characterization of filamentous hemagglutinin-deficient Bordetella pertussis.
Michael R Weigand
,
Lucia C Pawloski
,
Yanhui Peng
,
Hong Ju
,
Mark Burroughs
,
Pamela K Cassiday
,
Jamie K Davis
,
Marina DuVall
,
Taccara Johnson
,
Phalasy Juieng
,
Kristen Knipe
,
Vladimir N Loparev
,
Marsenia H Mathis
,
Lori A Rowe
,
Mili Sheth
,
Margaret M Williams
, and
M Lucia Tondella
Infection and immunity 2018 Jan
Similar articles in PubMed
DOI:
10.1128/IAI.00869-17
High-Quality Complete and Draft Genome Sequences for Three Escherichia spp. and Three Shigella spp. Generated with Pacific Biosciences and Illumina Sequencing and Optical Mapping.
Max R Schroeder,
Phalasy Juieng
,
Dhwani Batra
,
Kristen Knipe
,
Lori A Rowe
,
Mili Sheth
,
Peyton Smith
,
Lisley Garcia-Toledo
,
Vladimir N Loparev
, and
Rebecca L Lindsey
Genome announcements 2018 Jan (1)
Similar articles in PubMed
DOI:
10.1128/genomeA.01384-17
Complete Circularized Genome Sequences of Four Strains of Elizabethkingia anophelis, Including Two Novel Strains Isolated from Wild-Caught Anopheles sinensis.
Dong Pei,
Ainsley C Nicholson
, Jinjin Jiang, Huiying Chen,
Anne M Whitney
,
Aaron Villarma
,
Melissa Bell
,
Ben Humrighouse
,
Lori A Rowe
,
Mili Sheth
,
Dhwani Batra
,
Phalasy Juieng
,
Vladimir N Loparev
,
John R McQuiston
, Yuhao Lan, Yajun Ma, and Jiannong Xu
Genome announcements 2017 Nov (47)
Similar articles in PubMed
DOI:
10.1128/genomeA.01359-17
Twelve Complete Reference Genomes of Clinical Isolates in the Capnocytophaga Genus.
Aaron Villarma
,
Christopher A Gulvik
,
Lori A Rowe
,
Mili Sheth
,
Phalasy Juieng
,
Ainsley C Nicholson
,
Vladimir N Loparev
, and
John R McQuiston
Genome announcements 2017 Nov (44)
Similar articles in PubMed
DOI:
10.1128/genomeA.01186-17
Phylogeography of Burkholderia pseudomallei Isolates, Western Hemisphere.
Jay E Gee
,
Christopher A Gulvik
,
Mindy G Elrod
,
Dhwani Batra
,
Lori A Rowe
,
Mili Sheth
, and
Alex R Hoffmaster
Emerging infectious diseases 2017 Jul 23(7) 1133-1138
Similar articles in PubMed
DOI:
10.3201/eid2307.161978
High-Quality Genome Sequence of an Escherichia coli O157 Strain Carrying an mcr-1 Resistance Gene Isolated from a Patient in the United States.
Rebecca L Lindsey
,
Dhwani Batra
,
Lori Rowe
,
Vladimir N Loparev
,
Devon Stripling
,
Lisley Garcia-Toledo
,
Kristen Knipe
,
Phalasy Juieng
,
Mili Sheth
,
Haley Martin
, and
Alison Laufer Halpin
Genome announcements 2017 Mar (11)
Similar articles in PubMed
DOI:
10.1128/genomeA.01725-16
The History of Bordetella pertussis Genome Evolution Includes Structural Rearrangement.
Michael R Weigand
,
Yanhui Peng
,
Vladimir Loparev
,
Dhwani Batra
,
Katherine E Bowden
,
Mark Burroughs
,
Pamela K Cassiday
,
Jamie K Davis
,
Taccara Johnson
,
Phalasy Juieng
,
Kristen Knipe
,
Marsenia H Mathis
,
Andrea M Pruitt
,
Lori Rowe
,
Mili Sheth
,
M Lucia Tondella
, and
Margaret M Williams
Journal of bacteriology 2017 Feb
Similar articles in PubMed
DOI:
10.1128/JB.00806-16
Universal Human Papillomavirus Typing Assay: Whole Genome Sequencing Following Target Enrichment.
Tengguo Li
,
Elizabeth R Unger
,
Dhwani Batra
,
Mili Sheth
,
Martin Steinau
, Jean Jasinski, Jennifer Jones, and
Mangalathu S Rajeevan
Journal of clinical microbiology 2016 Dec
Similar articles in PubMed
DOI:
10.1128/JCM.02132-16
The Establishment and Diversification of Epidemic-Associated Serogroup W Meningococcus in the African Meningitis Belt, 1994 to 2012.
Adam C Retchless
,
Fang Hu
, Abdoul-Salam Ouédraogo, Seydou Diarra,
Kristen Knipe
,
Mili Sheth
,
Lori A Rowe
, Lassana Sangaré, Absetou Ky Ba, Soumeya Ouangraoua,
Dhwani Batra
, Ryan T Novak, Rasmata Ouédraogo Traoré, and
Xin Wang
mSphere 1(6)
Similar articles in PubMed
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Page last updated:
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