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CDC-Authored Genomics and Precision Health Publications Database|Home|PHGKB

CDC-Authored Genomics and Precision Health Publications Database


Last data update: May 24, 2022. (Total: 3846 publications since 2011)
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Records 1-30 (of 37 Records)
Query Trace: all>>Mili Sheth[CDC Author]
SARS-CoV-2 Delta-Omicron Recombinant Viruses, United States.
Kristine A Lacek, Benjamin L Rambo-Martin, Dhwani Batra, Xiao-Yu Zheng, Norman Hassell, Hitoshi Sakaguchi, Thomas Peacock, Natalie Groves, Matthew Keller, Malania M Wilson, Mili Sheth, Morgan L Davis, Mark Borroughs, Jonathan Gerhart, Samuel S Shepard, Peter W Cook, Justin Lee, David E Wentworth, John R Barnes, Rebecca Kondor, and Clinton R Paden
Emerging infectious diseases 2022 28(7)
Selective Whole-Genome Amplification as a Tool to Enrich Specimens with Low Treponema pallidum Genomic DNA Copies for Whole-Genome Sequencing.
Charles M Thurlow, Sandeep J Joseph, Lilia Ganova-Raeva, Samantha S Katz, Lara Pereira, Cheng Chen, Alyssa Debra, Kendra Vilfort, Kimberly Workowski, Stephanie E Cohen, Hilary Reno, Yongcheng Sun, Mark Burroughs, Mili Sheth, Kai-Hua Chi, Damien Danavall, Susan S Philip, Weiping Cao, Ellen N Kersh, and Allan Pillay
mSphere 2022 e0000922
Sentinel Surveillance Reveals Emerging Daptomycin-Resistant ST736 Enterococcus faecium and Multiple Mechanisms of Linezolid Resistance in Enterococci in the United States.
Amy S Gargis, Lori M Spicer, Alyssa G Kent, Wenming Zhu, Davina Campbell, Gillian McAllister, Thomas O Ewing, Valerie Albrecht, Valerie A Stevens, Mili Sheth, Jasmine Padilla, Dhwani Batra, J Kristie Johnson, Alison Laufer Halpin, J Kamile Rasheed, Christopher A Elkins, Maria Karlsson, and Joseph D Lutgring
Frontiers in microbiology 2022 12807398
Analysis of the initial lot of the CDC 2019-Novel Coronavirus (2019-nCoV) real-time RT-PCR diagnostic panel.
Justin S Lee, Jason M Goldstein, Jonathan L Moon, Owen Herzegh, Dennis A Bagarozzi, M Steven Oberste, Heather Hughes, Kanwar Bedi, Dorothie Gerard, Brenique Cameron, Christopher Benton, Asiya Chida, Ausaf Ahmad, David J Petway, Xiaoling Tang, Nicky Sulaiman, Dawit Teklu, Dhwani Batra, Dakota Howard, Mili Sheth, Wendi Kuhnert, Stephanie R Bialek, Christina L Hutson, Jan Pohl, and Darin S Carroll
PloS one 2021 16(12) e0260487
Comprehensive characterization of internal and cuticle surface microbiota of laboratory-reared F Anopheles albimanus originating from different sites.
Nsa Dada, Ana Cristina Benedict, Francisco López, Juan C Lol, Mili Sheth, Nicole Dzuris, Norma Padilla, and Audrey Lenhart
Malaria journal 2021 20(1) 414
Chromosome-Level Genome Sequence of Leishmania (Leishmania) tropica Strain CDC216-162, Isolated from an Afghanistan Clinical Case.
Yvette Unoarumhi, Dhwani Batra, Mili Sheth, Vidhya Narayanan, Wuling Lin, Yueli Zheng, Lori A Rowe, Jan Pohl, and Marcos de Almeida
Microbiology resource announcements 2021 10(20)
Draft Chromosome Sequences of a Clinical Isolate of the Free-Living Ameba Naegleria fowleri.
Ibne Karim M Ali, Alyssa Kelley, Sandeep J Joseph, Subin Park, Shantanu Roy, Jonathan Jackson, Jennifer R Cope, Lori A Rowe, Mark Burroughs, Mili Sheth, Dhwani Batra, and Vladimir Loparev
Microbiology resource announcements 2021 10(15)
Development of a new barcode-based, multiplex-PCR, next-generation-sequencing assay and data processing and analytical pipeline for multiplicity of infection detection of Plasmodium falciparum.
Rebecca M Mitchell, Zhiyong Zhou, Mili Sheth, Sheila Sergent, Michael Frace, Vishal Nayak, Bin Hu, John Gimnig, Feiko ter Kuile, Kim Lindblade, Laurence Slutsker, Mary J Hamel, Meghna Desai, Kephas Otieno, Simon Kariuki, Ymir Vigfusson, and Ya Ping Shi
Malaria journal 2021 Feb 20(1) 92
Western Kenyan Anopheles gambiae showing intense permethrin resistance harbour distinct microbiota.
Diana Omoke, Mathew Kipsum, Samson Otieno, Edward Esalimba, Mili Sheth, Audrey Lenhart, Ezekiel Mugendi Njeru, Eric Ochomo, and Nsa Dada
Malaria journal 2021 Feb 20(1) 77
Genomic Diversity of Burkholderia pseudomallei in Ceara, Brazil.
Jay E Gee, Christopher A Gulvik, Debora S C M Castelo-Branco, José J C Sidrim, Marcos F G Rocha, Rossana A Cordeiro, Raimunda S N Brilhante, Tereza J P G Bandeira, Iracema Patrício, Lucas P Alencar, Ana Karoline da Costa Ribeiro, Mili Sheth, Mark A Deka, Alex R Hoffmaster, and Dionne Rolim
mSphere 2021 6(1)
Division of the genus Chryseobacterium: Observation of discontinuities in amino acid identity values, a possible consequence of major extinction events, guides transfer of nine species to the genus Epilithonimonas , eleven species to the genus Kaistella , and three species to the genus Halpernia gen. nov., with description of Kaistella daneshvariae sp. nov. and Epilithonimonas vandammei sp. nov. derived from clinical specimens.
Ainsley C Nicholson, Christopher A Gulvik, Anne M Whitney, Ben W Humrighouse, Melissa E Bell, Barry Holmes, Arnie G Steigerwalt, Aaron Villarma, Mili Sheth, Dhwani Batra, Lori A Rowe, Mark Burroughs, Jessica C Pryor, Jean-François Bernardet, Celia Hugo, Peter Kämpfer, Jeffrey D Newman, and John R McQuiston
International journal of systematic and evolutionary microbiology 2020 Jan
Understanding the Emergence of Multidrug-Resistant Candida : Using Whole-Genome Sequencing to Describe the Population Structure of Candida haemulonii Species Complex.
Lalitha Gade, Jose F Muñoz, Mili Sheth, Darlene Wagner, Elizabeth L Berkow, Kaitlin Forsberg, Brendan R Jackson, Ruben Ramos-Castro, Patricia Escandón, Maribel Dolande, Ronen Ben-Ami, Andrés Espinosa-Bode, Diego H Caceres, Shawn R Lockhart, Christina A Cuomo, and Anastasia P Litvintseva
Frontiers in genetics 2020 11554
Conserved Patterns of Symmetric Inversion in the Genome Evolution of Bordetella Respiratory Pathogens.
Michael R Weigand, Yanhui Peng, Dhwani Batra, Mark Burroughs, Jamie K Davis, Kristen Knipe, Vladimir N Loparev, Taccara Johnson, Phalasy Juieng, Lori A Rowe, Mili Sheth, Kevin Tang, Yvette Unoarumhi, Margaret M Williams, and M Lucia Tondella
mSystems 2019 Nov (6)
Pyrethroid exposure alters internal and cuticle surface bacterial communities in Anopheles albimanus.
Nsa Dada, Juan C Lol, Ana Cristina Benedict, Francisco López, Mili Sheth, Nicole Dzuris, Norma Padilla, and Audrey Lenhart
The ISME journal 2019 Jun
Draft Genome Sequences of Leishmania ( Leishmania ) amazonensis , Leishmania ( Leishmania ) mexicana , and Leishmania ( Leishmania ) aethiopica , Potential Etiological Agents of Diffuse Cutaneous Leishmaniasis.
Dhwani Batra, Wuling Lin, Vidhya Narayanan, Lori A Rowe, Mili Sheth, Yueli Zheng, Vladimir Loparev, and Marcos de Almeida
Microbiology resource announcements 2019 May (20)
First Draft Genome Sequence of Leishmania (Viannia) lainsoni Strain 216-34, Isolated from a Peruvian Clinical Case.
Wuling Lin, Dhwani Batra, Vidhya Narayanan, Lori A Rowe, Mili Sheth, Yueli Zheng, Phalasy Juieng, Vladimir Loparev, and Marcos de Almeida
Microbiology resource announcements 2019 Feb (6)
Draft Genome Sequence of French Guiana Leishmania ( Viannia ) guyanensis Strain 204-365, Assembled Using Long Reads.
Dhwani Batra, Wuling Lin, Lori A Rowe, Mili Sheth, Yueli Zheng, Vladimir Loparev, and Marcos de Almeida
Microbiology resource announcements 2018 Dec (23)
PacBio Genome Sequences of Escherichia coli Serotype O157:H7, Diffusely Adherent E. coli , and Salmonella enterica Strains, All Carrying Plasmids with an mcr-1 Resistance Gene.
Rebecca L Lindsey, Dhwani Batra, Peyton Smith, Pooja N Patel, Kaitlin A Tagg, Lisley Garcia-Toledo, Vladimir N Loparev, Phalasy Juieng, Mili Sheth, Yoo Jin Joung, and Lori A Rowe
Microbiology resource announcements 2018 (14)
Restriction enzyme digestion of host DNA enhances universal detection of parasitic pathogens in blood via targeted amplicon deep sequencing.
Briana R Flaherty, Eldin Talundzic, Joel Barratt, Kristine J Kines, Christian Olsen, Meredith Lane, Mili Sheth, and Richard S Bradbury
Microbiome 2018 Sep (1) 164
The draft genomes of Elizabethkingia anophelis of equine origin are genetically similar to three isolates from human clinical specimens.
William L Johnson, Akhilesh Ramachandran, Nathanial J Torres, Ainsley C Nicholson, Anne M Whitney, Melissa Bell, Aaron Villarma, Ben W Humrighouse, Mili Sheth, Scot E Dowd, John R McQuiston, and John E Gustafson
PloS one 2018 13(7) e0200731
Whole metagenome sequencing reveals links between mosquito microbiota and insecticide resistance in malaria vectors.
Nsa Dada, Mili Sheth, Kelly Liebman, Jesus Pinto, and Audrey Lenhart
Scientific reports 2018 Feb 8(1) 2084
Screening and genomic characterization of filamentous hemagglutinin-deficient Bordetella pertussis.
Michael R Weigand, Lucia C Pawloski, Yanhui Peng, Hong Ju, Mark Burroughs, Pamela K Cassiday, Jamie K Davis, Marina DuVall, Taccara Johnson, Phalasy Juieng, Kristen Knipe, Vladimir N Loparev, Marsenia H Mathis, Lori A Rowe, Mili Sheth, Margaret M Williams, and M Lucia Tondella
Infection and immunity 2018 Jan
High-Quality Complete and Draft Genome Sequences for Three Escherichia spp. and Three Shigella spp. Generated with Pacific Biosciences and Illumina Sequencing and Optical Mapping.
Max R Schroeder, Phalasy Juieng, Dhwani Batra, Kristen Knipe, Lori A Rowe, Mili Sheth, Peyton Smith, Lisley Garcia-Toledo, Vladimir N Loparev, and Rebecca L Lindsey
Genome announcements 2018 Jan (1)
Complete Circularized Genome Sequences of Four Strains of Elizabethkingia anophelis, Including Two Novel Strains Isolated from Wild-Caught Anopheles sinensis.
Dong Pei, Ainsley C Nicholson, Jinjin Jiang, Huiying Chen, Anne M Whitney, Aaron Villarma, Melissa Bell, Ben Humrighouse, Lori A Rowe, Mili Sheth, Dhwani Batra, Phalasy Juieng, Vladimir N Loparev, John R McQuiston, Yuhao Lan, Yajun Ma, and Jiannong Xu
Genome announcements 2017 Nov (47)
Twelve Complete Reference Genomes of Clinical Isolates in the Capnocytophaga Genus.
Aaron Villarma, Christopher A Gulvik, Lori A Rowe, Mili Sheth, Phalasy Juieng, Ainsley C Nicholson, Vladimir N Loparev, and John R McQuiston
Genome announcements 2017 Nov (44)
Phylogeography of Burkholderia pseudomallei Isolates, Western Hemisphere.
Jay E Gee, Christopher A Gulvik, Mindy G Elrod, Dhwani Batra, Lori A Rowe, Mili Sheth, and Alex R Hoffmaster
Emerging infectious diseases 2017 Jul 23(7) 1133-1138
High-Quality Genome Sequence of an Escherichia coli O157 Strain Carrying an mcr-1 Resistance Gene Isolated from a Patient in the United States.
Rebecca L Lindsey, Dhwani Batra, Lori Rowe, Vladimir N Loparev, Devon Stripling, Lisley Garcia-Toledo, Kristen Knipe, Phalasy Juieng, Mili Sheth, Haley Martin, and Alison Laufer Halpin
Genome announcements 2017 Mar (11)
The History of Bordetella pertussis Genome Evolution Includes Structural Rearrangement.
Michael R Weigand, Yanhui Peng, Vladimir Loparev, Dhwani Batra, Katherine E Bowden, Mark Burroughs, Pamela K Cassiday, Jamie K Davis, Taccara Johnson, Phalasy Juieng, Kristen Knipe, Marsenia H Mathis, Andrea M Pruitt, Lori Rowe, Mili Sheth, M Lucia Tondella, and Margaret M Williams
Journal of bacteriology 2017 Feb
Universal Human Papillomavirus Typing Assay: Whole Genome Sequencing Following Target Enrichment.
Tengguo Li, Elizabeth R Unger, Dhwani Batra, Mili Sheth, Martin Steinau, Jean Jasinski, Jennifer Jones, and Mangalathu S Rajeevan
Journal of clinical microbiology 2016 Dec
The Establishment and Diversification of Epidemic-Associated Serogroup W Meningococcus in the African Meningitis Belt, 1994 to 2012.
Adam C Retchless, Fang Hu, Abdoul-Salam Ouédraogo, Seydou Diarra, Kristen Knipe, Mili Sheth, Lori A Rowe, Lassana Sangaré, Absetou Ky Ba, Soumeya Ouangraoua, Dhwani Batra, Ryan T Novak, Rasmata Ouédraogo Traoré, and Xin Wang
mSphere 1(6)
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