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CDC-Authored Genomics and Precision Health Publications Database|Home|PHGKB

CDC-Authored Genomics and Precision Health Publications Database


Last data update: Jun 02, 2023. (Total: 4301 publications since 2011)
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Records 1-22 (of 22 Records)
Query Trace: all>>Chunfu Yang[CDC Author]
The performance of using dried blood spot specimens for HIV-1 viral load testing: A systematic review and meta-analysis.
Vojnov L , Carmona S , Zeh C , Markby J , Boeras D , Prescott MR , Mayne ALH , Sawadogo S , Adje-Toure C , Zhang G , PerezGonzalez M , Stevens WS , Doherty M , Yang C , Alexander H , Peter TF , Nkengasong J .
PLoS Med 2022 19 (8) e1004076
Diagnostic Accuracy of Dried Plasma Spot Specimens for HIV-1 Viral Load Testing: A Systematic Review and Meta-analysis.
Fong Y , Markby J , Andreotti M , Beck I , Bourlet T , Brambilla D , Frenkel L , Lira R , Nelson JAE , Pollakis G , Reigadas S , Richman D , Sawadogo S , Waters L , Yang C , Zeh C , Doherty M , Vojnov L .
J Acquir Immune Defic Syndr 2021 89 (3) 261-273
High levels of HIV drug resistance among adults failing second-line antiretroviral therapy in Namibia.
Jordan MR , Hamunime N , Bikinesi L , Sawadogo S , Agolory S , Shiningavamwe AN , Negussie T , Fisher-Walker CL , Raizes EG , Mutenda N , Hunter CJ , Dean N , Steegen K , Kana V , Carmona S , Yang C , Tang AM , Parkin N , Hong SY .
Medicine (Baltimore) 2020 99 (37) e21661
Low levels of HIV-1 drug resistance mutations in patients who achieved viral re-suppression without regimen switch: a retrospective study.
Onwuamah CK , Okpokwu J , Audu R , Imade G , Meloni ST , Okwuraiwe A , Chebu P , Musa AZ , Chaplin B , Dalhatu I , Agbaji O , Samuels J , Ezechi O , Ahmed M , Odaibo G , Olaleye DO , Okonkwo P , Salako BL , Raizes E , Yang C , Kanki PJ , Idigbe EO .
BMC Microbiol 2020 20 (1) 17
Detection of minority drug resistant mutations in Malawian HIV-1 subtype C-positive patients initiating and on first-line antiretroviral therapy.
Zhou Z , Tang K , Zhang G , Wadonda-Kabondo N , Moyo K , Rowe LA , DeVos JR , Wagar N , Zheng DP , Guo H , Nkengasong J , Frace M , Sammons S , Yang C .
Afr J Lab Med 2018 7 (1) 708
Decoding noises in HIV computational genotyping.
Jia MingRui, Shaw Timothy, Zhang Xing, Liu Dong, Shen Ye, Ezeamama Amara E, Yang Chunfu, Zhang Ming. Virology 2017 Nov 511249-255 .
Virology 2017 Nov 511249-255
Mutational Correlates of Virological Failure in Individuals Receiving a WHO-Recommended Tenofovir-Containing First-Line Regimen: An International Collaboration.
Rhee Soo-Yon, Varghese Vici, Holmes Susan P, Van Zyl Gert U, Steegen Kim, Boyd Mark A, Cooper David A, Nsanzimana Sabin, Saravanan Shanmugam, Charpentier Charlotte, de Oliveira Tulio, Etiebet Mary-Ann A, Garcia Federico, Goedhals Dominique, Gomes Perpetua, Günthard Huldrych F, Hamers Raph L, Hoffmann Christopher J, Hunt Gillian, Jiamsakul Awachana, Kaleebu Pontiano, Kanki Phyllis, Kantor Rami, Kerschberger Bernhard, Marconi Vincent C, D'amour Ndahimana Jean, Ndembi Nicaise, Ngo-Giang-Huong Nicole, Rokx Casper, Santoro Maria M, Schapiro Jonathan M, Schmidt Daniel, Seu Lillian, Sigaloff Kim C E, Sirivichayakul Sunee, Skhosana Lindiwe, Sunpath Henry, Tang Michele, Yang Chunfu, Carmona Sergio, Gupta Ravindra K, Shafer Robert W. EBioMedicine 2017 Apr 18225-235 .
EBioMedicine 2017 Apr 18225-235
Prevalence and dynamics of the K65R drug resistance mutation in HIV-1-infected infants exposed to maternal therapy with lamivudine, zidovudine and either nevirapine or nelfinavir in breast milk.
Inzaule Seth C, Weidle Paul J, Yang Chunfu, Ndiege Kenneth, Hamers Raph L, Rinke de Wit Tobias F, Thomas Timothy, Zeh Clement.The Journal of antimicrobial chemotherapy 2016 Mar .
The Journal of antimicrobial chemotherapy 2016 Mar
HIV-1 Drug Resistance Mutations: Potential Applications for Point-of-Care Genotypic Resistance Testing.
Rhee Soo-Yon, Jordan Michael R, Raizes Elliot, Chua Arlene, Parkin Neil, Kantor Rami, Van Zyl Gert U, Mukui Irene, Hosseinipour Mina C, Frenkel Lisa M, Ndembi Nicaise, Hamers Raph L, Rinke de Wit Tobias F, Wallis Carole L, Gupta Ravindra K, Fokam Joseph, Zeh Clement, Schapiro Jonathan M, Carmona Sergio, Katzenstein David, Tang Michele, Aghokeng Avelin F, De Oliveira Tulio, Wensing Annemarie M J, Gallant Joel E, Wainberg Mark A, Richman Douglas D, Fitzgibbon Joseph E, Schito Marco, Bertagnolio Silvia, Yang Chunfu, Shafer Robert W.PloS one 0 (12) e0145772 .
PloS one 2015 (12) e0145772
Simultaneous Detection of Major Drug Resistance Mutations of HIV-1 Subtype B Viruses from Dried Blood Spot Specimens by Multiplex Allele-specific Assay.
Zhang Guoqing, Cai Fangping, de Rivera Ivette Lorenzana, Zhou Zhiyong, Zhang Jing, Nkengasong John, Gao Feng, Yang Chunfu.Journal of clinical microbiology 2015 Nov .
Journal of clinical microbiology 2015 Nov
Prevalence of transmitted HIV-1 drug resistance among young adults attending HIV counselling and testing clinics in Kigali, Rwanda.
Mutagoma Mwumvaneza, Ndahimana Jean d'Amour, Kayirangwa Eugenie, Dahourou Anicet G, Balisanga Helen, DeVos Joshua R, McAlister David, Yang Chunfu, Bertagnolio Silvia, Riedel David J, Nsanzimana Sabin.Antiviral therapy 2016 (3) 247-51 .
Antiviral therapy 2016 (3) 247-51
Comparative genomic analysis reveals occurrence of genetic recombination in virulent Cryptosporidium hominis subtypes and telomeric gene duplications in Cryptosporidium parvum.
Guo Yaqiong, Tang Kevin, Rowe Lori A, Li Na, Roellig Dawn M, Knipe Kristine, Frace Michael, Yang Chunfu, Feng Yaoyu, Xiao Lihua. BMC Genomics 2015 16320 .
BMC Genomics 2015 16320
Geographic and temporal trends in the molecular epidemiology and genetic mechanisms of transmitted HIV-1 drug resistance: an individual-patient- and sequence-level meta-analysis.
Rhee Soo-Yon, Blanco Jose Luis, Jordan Michael R, Taylor Jonathan, Lemey Philippe, Varghese Vici, Hamers Raph L, Bertagnolio Silvia, Rinke de Wit Tobias F, Aghokeng Avelin F, Albert Jan, Avi Radko, Avila-Rios Santiago, Bessong Pascal O, Brooks James I, Boucher Charles A B, Brumme Zabrina L, Busch Michael P, Bussmann Hermann, Chaix Marie-Laure, Chin Bum Sik, D'Aquin Toni T, De Gascun Cillian F, Derache Anne, Descamps Diane, Deshpande Alaka K, Djoko Cyrille F, Eshleman Susan H, Fleury Herve, Frange Pierre, Fujisaki Seiichiro, Harrigan P Richard, Hattori Junko, Holguin Africa, Hunt Gillian M, Ichimura Hiroshi, Kaleebu Pontiano, Katzenstein David, Kiertiburanakul Sasisopin, Kim Jerome H, Kim Sung Soon, Li Yanpeng, Lutsar Irja, Morris Lynn, Ndembi Nicaise, Ng Kee Peng, Paranjape Ramesh S, Peeters Martine, Poljak Mario, Price Matt A, Ragonnet-Cronin Manon L, Reyes-Terán Gustavo, Rolland Morgane, Sirivichayakul Sunee, Smith Davey M, Soares Marcelo A, Soriano Vincent V, Ssemwanga Deogratius, Stanojevic Maja, Stefani Mariane A, Sugiura Wataru, Sungkanuparph Somnuek, Tanuri Amilcar, Tee Kok Keng, Truong Hong-Ha M, van de Vijver David A M C, Vidal Nicole, Yang Chunfu, Yang Rongge, Yebra Gonzalo, Ioannidis John P A, Vandamme Anne-Mieke, Shafer Robert W. PLoS Med. 2015 Apr 12(4) e1001810 .
PLoS Med. 2015 Apr 12(4) e1001810
Subtyping novel zoonotic pathogen Cryptosporidium chipmunk genotype I.
Guo Yaqiong, Cebelinski Elizabeth, Matusevich Christine, Alderisio Kerri A, Lebbad Marianne, McEvoy John, Roellig Dawn M, Yang Chunfu, Feng Yaoyu, Xiao Lihua. J. Clin. Microbiol. 2015 May 53(5) 1648-54 .
J. Clin. Microbiol. 2015 May 53(5) 1648-54
Viral Genetic Diversity and Polymorphisms in a Cohort of HIV-1-Infected Patients Eligible for Initiation of Antiretroviral Therapy in Abuja, Nigeria.
Diallo Karidia, Zheng Du-Ping, Rottinghaus Erin K, Bassey Orji, Yang Chunfu.AIDS Res. Hum. Retroviruses 2015 May (5) 564-75 .
AIDS Res. Hum. Retroviruses 2015 May (5) 564-75
Limited utility of dried-blood- and plasma spot-based screening for antiretroviral treatment failure with Cobas Ampliprep/TaqMan HIV-1 version 2.0.
Sawadogo Souleymane, Shiningavamwe Andreas, Chang Joy, Maher Andrew D, Zhang Guoqing, Yang Chunfu, Gaeb Esegiel, Kaura Harold, Ellenberger Dennis, Lowrance David W. J. Clin. Microbiol. 2014 Nov 52(11) 3878-83 .
J. Clin. Microbiol. 2014 Nov 52(11) 3878-83
Evaluation of a dried blood and plasma collection device, SampleTanker(®), for HIV type 1 drug resistance genotyping in patients receiving antiretroviral therapy.
Diallo Karidia, Lehotzky Erica, Zhang Jing, Zhou Zhiyong, de Rivera Ivette Lorenzana, Murillo Wendy E, Nkengasong John, Sabatier Jennifer, Zhang Guoqing, Yang Chunfu. AIDS Res. Hum. Retroviruses 2014 Jan 30(1) 67-73 .
AIDS Res. Hum. Retroviruses 2014 Jan 30(1) 67-73
Field evaluation of a broadly sensitive HIV-1 in-house genotyping assay for use with both plasma and dried blood spot specimens in a resource-limited country.
Inzaule Seth, Yang Chunfu, Kasembeli Alex, Nafisa Lillian, Okonji Jully, Oyaro Boaz, Lando Richard, Mills Lisa A, Laserson Kayla, Thomas Timothy, Nkengasong John, Zeh Clement. J. Clin. Microbiol. 2013 Feb 51(2) 529-39 .
J. Clin. Microbiol. 2013 Feb 51(2) 529-39
Comparison of Ahlstrom grade 226, Munktell TFN, and Whatman 903 filter papers for dried blood spot specimen collection and subsequent HIV-1 load and drug resistance genotyping analysis.
Rottinghaus Erin, Bile Ebi, Modukanele Mosetsanagape, Maruping Maruping, Mine Madisa, Nkengasong John, Yang Chunfu. J. Clin. Microbiol. 2013 Jan 51(1) 55-60 .
J. Clin. Microbiol. 2013 Jan 51(1) 55-60
Comparison of HIV-1 resistance profiles in plasma RNA versus PBMC DNA in heavily treated patients in Honduras, a resource-limited country.
Diallo Karidia, Murillo Wendy E, de Rivera Ivette Lorenzana, Albert Jan, Zhou Zhiyong, Nkengasong John, Zhang Guoqing, Sabatier Jennifer F, Yang Chunfu. Int J Mol Epidemiol Genet 2012 3(1) 56-65 .
Int J Mol Epidemiol Genet 2012 3(1) 56-65
Dried blood spot specimens are a suitable alternative sample type for HIV-1 viral load measurement and drug resistance genotyping in patients receiving first-line antiretroviral therapy.
Rottinghaus Erin K, Ugbena Richard, Diallo Karidia, Bassey Orji, Azeez Aderemi, Devos Joshua, Zhang Guoqing, Aberle-Grasse John, Nkengasong John, Yang Chunfu. Clin. Infect. Dis. 2012 Apr 54(8) 1187-95 .
Clin. Infect. Dis. 2012 Apr 54(8) 1187-95
Optimization of a low cost and broadly sensitive genotyping assay for HIV-1 drug resistance surveillance and monitoring in resource-limited settings.
Zhou Zhiyong, Wagar Nick, DeVos Joshua R, Rottinghaus Erin, Diallo Karidia, Nguyen Duc B, Bassey Orji, Ugbena Richard, Wadonda-Kabondo Nellie, McConnell Michelle S, Zulu Isaac, Chilima Benson, Nkengasong John, Yang Chunfu. PLoS ONE 2011 6(11) e28184 .
PLoS ONE 2011 6(11) e28184
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