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CDC-Authored Genomics and Precision Health Publications Database|Home|PHGKB

CDC-Authored Genomics and Precision Health Publications Database


Last data update: Feb 03, 2023. (Total: 4188 publications since 2011)
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Records 1-22 (of 22 Records)
Query Trace: all>>Chunfu Yang[CDC Author]
The performance of using dried blood spot specimens for HIV-1 viral load testing: A systematic review and meta-analysis.
Lara Vojnov, Sergio Carmona, Clement Zeh, Jessica Markby, Debrah Boeras, Marta R Prescott, Anthony L H Mayne, Souleymane Sawadogo, Christiane Adje-Toure, Guoqing Zhang, Mercedes Perez Gonzalez, Wendy S Stevens, Meg Doherty, Chunfu Yang, Heather Alexander, Trevor F Peter, John Nkengasong, and
PLoS medicine 2022 19(8) e1004076
Diagnostic Accuracy of Dried Plasma Spot Specimens for HIV-1 Viral Load Testing: A Systematic Review and Meta-analysis.
Youyi Fong, Jessica Markby, Mauro Andreotti, Ingrid Beck, Thomas Bourlet, Don Brambilla, Lisa Frenkel, Rosalia Lira, Julie A E Nelson, Georgios Pollakis, Sandrine Reigadas, Douglas Richman, Souleymane Sawadogo, Laura Waters, Chunfu Yang, Clement Zeh, Meg Doherty, and Lara Vojnov
Journal of acquired immune deficiency syndromes (1999) 2021 89(3) 261-273
High levels of HIV drug resistance among adults failing second-line antiretroviral therapy in Namibia.
Michael R Jordan, Ndapewa Hamunime, Leonard Bikinesi, Souleymane Sawadogo, Simon Agolory, Andreas N Shiningavamwe, Taffa Negussie, Christa L Fisher-Walker, Elliot G Raizes, Nicholus Mutenda, Christian J Hunter, Natalie Dean, Kim Steegen, Vibha Kana, Sergio Carmona, Chunfu Yang, Alice M Tang, Neil Parkin, and Steven Y Hong
Medicine 2020 Sep 99(37) e21661
Low levels of HIV-1 drug resistance mutations in patients who achieved viral re-suppression without regimen switch: a retrospective study.
Chika K Onwuamah, Jonathan Okpokwu, Rosemary Audu, Godwin Imade, Seema T Meloni, Azuka Okwuraiwe, Philippe Chebu, Adesola Z Musa, Beth Chaplin, Ibrahim Dalhatu, Oche Agbaji, Jay Samuels, Oliver Ezechi, Mukhtar Ahmed, Georgina Odaibo, David O Olaleye, Prosper Okonkwo, Babatunde Lawal Salako, Elliot Raizes, Chunfu Yang, Phyllis J Kanki, and Emmanuel O Idigbe
BMC microbiology 2020 Jan (1) 17
Detection of minority drug resistant mutations in Malawian HIV-1 subtype C-positive patients initiating and on first-line antiretroviral therapy.
Zhiyong Zhou, Kevin Tang, Guoqing Zhang, Nellie Wadonda-Kabondo, Kundai Moyo, Lori A Rowe, Joshua R DeVos, Nick Wagar, Du-Ping Zheng, Hongxiong Guo, John Nkengasong, Mike Frace, Scott Sammons, and Chunfu Yang
African journal of laboratory medicine 2018 (1) 708
Decoding noises in HIV computational genotyping.
Mingrui Jia, Timothy Shaw, Xing Zhang, Dong Liu, Ye Shen, Amara E Ezeamama, Chunfu Yang, and Ming Zhang
Virology 2017 Nov 511249-255
Mutational Correlates of Virological Failure in Individuals Receiving a WHO-Recommended Tenofovir-Containing First-Line Regimen: An International Collaboration.
Soo-Yon Rhee, Vici Varghese, Susan P Holmes, Gert U Van Zyl, Kim Steegen, Mark A Boyd, David A Cooper, Sabin Nsanzimana, Shanmugam Saravanan, Charlotte Charpentier, Tulio de Oliveira, Mary-Ann A Etiebet, Federico Garcia, Dominique Goedhals, Perpetua Gomes, Huldrych F Günthard, Raph L Hamers, Christopher J Hoffmann, Gillian Hunt, Awachana Jiamsakul, Pontiano Kaleebu, Phyllis Kanki, Rami Kantor, Bernhard Kerschberger, Vincent C Marconi, Jean D'amour Ndahimana, Nicaise Ndembi, Nicole Ngo-Giang-Huong, Casper Rokx, Maria M Santoro, Jonathan M Schapiro, Daniel Schmidt, Lillian Seu, Kim C E Sigaloff, Sunee Sirivichayakul, Lindiwe Skhosana, Henry Sunpath, Michele Tang, Chunfu Yang, Sergio Carmona, Ravindra K Gupta, and Robert W Shafer
EBioMedicine 2017 Apr 18225-235
Prevalence and dynamics of the K65R drug resistance mutation in HIV-1-infected infants exposed to maternal therapy with lamivudine, zidovudine and either nevirapine or nelfinavir in breast milk.
Seth C Inzaule, Paul J Weidle, Chunfu Yang, Kenneth Ndiege, Raph L Hamers, Tobias F Rinke de Wit, Timothy Thomas, and Clement Zeh
The Journal of antimicrobial chemotherapy 2016 Mar
HIV-1 Drug Resistance Mutations: Potential Applications for Point-of-Care Genotypic Resistance Testing.
Soo-Yon Rhee, Michael R Jordan, Elliot Raizes, Arlene Chua, Neil Parkin, Rami Kantor, Gert U Van Zyl, Irene Mukui, Mina C Hosseinipour, Lisa M Frenkel, Nicaise Ndembi, Raph L Hamers, Tobias F Rinke de Wit, Carole L Wallis, Ravindra K Gupta, Joseph Fokam, Clement Zeh, Jonathan M Schapiro, Sergio Carmona, David Katzenstein, Michele Tang, Avelin F Aghokeng, Tulio de Oliveira, Annemarie M J Wensing, Joel E Gallant, Mark A Wainberg, Douglas D Richman, Joseph E Fitzgibbon, Marco Schito, Silvia Bertagnolio, Chunfu Yang, and Robert W Shafer
PloS one 2015 (12) e0145772
Simultaneous Detection of Major Drug Resistance Mutations of HIV-1 Subtype B Viruses from Dried Blood Spot Specimens by Multiplex Allele-specific Assay.
Guoqing Zhang, Fangping Cai, Ivette Lorenzana de Rivera, Zhiyong Zhou, Jing Zhang, John Nkengasong, Feng Gao, and Chunfu Yang
Journal of clinical microbiology 2015 Nov
Prevalence of transmitted HIV-1 drug resistance among young adults attending HIV counselling and testing clinics in Kigali, Rwanda.
Mwumvaneza Mutagoma, Jean d'Amour Ndahimana, Eugenie Kayirangwa, Anicet G Dahourou, Helen Balisanga, Joshua R DeVos, David McAlister, Chunfu Yang, Silvia Bertagnolio, David J Riedel, and Sabin Nsanzimana
Antiviral therapy 2016 (3) 247-51
Comparative genomic analysis reveals occurrence of genetic recombination in virulent Cryptosporidium hominis subtypes and telomeric gene duplications in Cryptosporidium parvum.
Yaqiong Guo, Kevin Tang, Lori A Rowe, Na Li, Dawn M Roellig, Kristine Knipe, Michael Frace, Chunfu Yang, Yaoyu Feng, and Lihua Xiao
BMC Genomics 2015 16320
Geographic and temporal trends in the molecular epidemiology and genetic mechanisms of transmitted HIV-1 drug resistance: an individual-patient- and sequence-level meta-analysis.
Soo-Yon Rhee, Jose Luis Blanco, Michael R Jordan, Jonathan Taylor, Philippe Lemey, Vici Varghese, Raph L Hamers, Silvia Bertagnolio, Tobias F Rinke de Wit, Avelin F Aghokeng, Jan Albert, Radko Avi, Santiago Avila-Rios, Pascal O Bessong, James I Brooks, Charles A B Boucher, Zabrina L Brumme, Michael P Busch, Hermann Bussmann, Marie-Laure Chaix, Bum Sik Chin, Toni T D'Aquin, Cillian F De Gascun, Anne Derache, Diane Descamps, Alaka K Deshpande, Cyrille F Djoko, Susan H Eshleman, Herve Fleury, Pierre Frange, Seiichiro Fujisaki, P Richard Harrigan, Junko Hattori, Africa Holguin, Gillian M Hunt, Hiroshi Ichimura, Pontiano Kaleebu, David Katzenstein, Sasisopin Kiertiburanakul, Jerome H Kim, Sung Soon Kim, Yanpeng Li, Irja Lutsar, Lynn Morris, Nicaise Ndembi, Kee Peng Ng, Ramesh S Paranjape, Martine Peeters, Mario Poljak, Matt A Price, Manon L Ragonnet-Cronin, Gustavo Reyes-Terán, Morgane Rolland, Sunee Sirivichayakul, Davey M Smith, Marcelo A Soares, Vincent V Soriano, Deogratius Ssemwanga, Maja Stanojevic, Mariane A Stefani, Wataru Sugiura, Somnuek Sungkanuparph, Amilcar Tanuri, Kok Keng Tee, Hong-Ha M Truong, David A M C van de Vijver, Nicole Vidal, Chunfu Yang, Rongge Yang, Gonzalo Yebra, John P A Ioannidis, Anne-Mieke Vandamme, and Robert W Shafer
PLoS Med. 2015 Apr 12(4) e1001810
Subtyping novel zoonotic pathogen Cryptosporidium chipmunk genotype I.
Yaqiong Guo, Elizabeth Cebelinski, Christine Matusevich, Kerri A Alderisio, Marianne Lebbad, John McEvoy, Dawn M Roellig, Chunfu Yang, Yaoyu Feng, and Lihua Xiao
J. Clin. Microbiol. 2015 May 53(5) 1648-54
Viral Genetic Diversity and Polymorphisms in a Cohort of HIV-1-Infected Patients Eligible for Initiation of Antiretroviral Therapy in Abuja, Nigeria.
Karidia Diallo, Du-Ping Zheng, Erin K Rottinghaus, Orji Bassey, and Chunfu Yang
AIDS Res. Hum. Retroviruses 2015 May (5) 564-75
Limited utility of dried-blood- and plasma spot-based screening for antiretroviral treatment failure with Cobas Ampliprep/TaqMan HIV-1 version 2.0.
Souleymane Sawadogo, Andreas Shiningavamwe, Joy Chang, Andrew D Maher, Guoqing Zhang, Chunfu Yang, Esegiel Gaeb, Harold Kaura, Dennis Ellenberger, and David W Lowrance
J. Clin. Microbiol. 2014 Nov 52(11) 3878-83
Evaluation of a dried blood and plasma collection device, SampleTanker(®), for HIV type 1 drug resistance genotyping in patients receiving antiretroviral therapy.
Karidia Diallo, Erica Lehotzky, Jing Zhang, Zhiyong Zhou, Ivette Lorenzana de Rivera, Wendy E Murillo, John Nkengasong, Jennifer Sabatier, Guoqing Zhang, and Chunfu Yang
AIDS Res. Hum. Retroviruses 2014 Jan 30(1) 67-73
Field evaluation of a broadly sensitive HIV-1 in-house genotyping assay for use with both plasma and dried blood spot specimens in a resource-limited country.
Seth Inzaule, Chunfu Yang, Alex Kasembeli, Lillian Nafisa, Jully Okonji, Boaz Oyaro, Richard Lando, Lisa A Mills, Kayla Laserson, Timothy Thomas, John Nkengasong, and Clement Zeh
J. Clin. Microbiol. 2013 Feb 51(2) 529-39
Comparison of Ahlstrom grade 226, Munktell TFN, and Whatman 903 filter papers for dried blood spot specimen collection and subsequent HIV-1 load and drug resistance genotyping analysis.
Erin Rottinghaus, Ebi Bile, Mosetsanagape Modukanele, Maruping Maruping, Madisa Mine, John Nkengasong, and Chunfu Yang
J. Clin. Microbiol. 2013 Jan 51(1) 55-60
Comparison of HIV-1 resistance profiles in plasma RNA versus PBMC DNA in heavily treated patients in Honduras, a resource-limited country.
Karidia Diallo, Wendy E Murillo, Ivette Lorenzana de Rivera, Jan Albert, Zhiyong Zhou, John Nkengasong, Guoqing Zhang, Jennifer F Sabatier, and Chunfu Yang
Int J Mol Epidemiol Genet 2012 3(1) 56-65
Dried blood spot specimens are a suitable alternative sample type for HIV-1 viral load measurement and drug resistance genotyping in patients receiving first-line antiretroviral therapy.
Erin K Rottinghaus, Richard Ugbena, Karidia Diallo, Orji Bassey, Aderemi Azeez, Joshua DeVos, Guoqing Zhang, John Aberle-Grasse, John Nkengasong, and Chunfu Yang
Clin. Infect. Dis. 2012 Apr 54(8) 1187-95
Optimization of a low cost and broadly sensitive genotyping assay for HIV-1 drug resistance surveillance and monitoring in resource-limited settings.
Zhiyong Zhou, Nick Wagar, Joshua R DeVos, Erin Rottinghaus, Karidia Diallo, Duc B Nguyen, Orji Bassey, Richard Ugbena, Nellie Wadonda-Kabondo, Michelle S McConnell, Isaac Zulu, Benson Chilima, John Nkengasong, and Chunfu Yang
PLoS ONE 2011 6(11) e28184
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