CDC-Authored Genomics and Precision Health Publications Database
Last data update: Mar 26, 2020. (Total: 2834 publications since 2011)
| Query Trace: all>>Chunfu Yang[CDC Author] |
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| Low levels of HIV-1 drug resistance mutations in patients who achieved viral re-suppression without regimen switch: a retrospective study. Chika K Onwuamah, Jonathan Okpokwu, Rosemary Audu, Godwin Imade, Seema T Meloni, Azuka Okwuraiwe, Philippe Chebu, Adesola Z Musa, Beth Chaplin, Ibrahim Dalhatu, Oche Agbaji, Jay Samuels, Oliver Ezechi, Mukhtar Ahmed, Georgina Odaibo, David O Olaleye, Prosper Okonkwo, Babatunde Lawal Salako, Elliot Raizes, Chunfu Yang, Phyllis J Kanki, and Emmanuel O Idigbe BMC microbiology 2020 Jan (1) 17 |
| Detection of minority drug resistant mutations in Malawian HIV-1 subtype C-positive patients initiating and on first-line antiretroviral therapy. Zhiyong Zhou, Kevin Tang, Guoqing Zhang, Nellie Wadonda-Kabondo, Kundai Moyo, Lori A Rowe, Joshua R DeVos, Nick Wagar, Du-Ping Zheng, Hongxiong Guo, John Nkengasong, Mike Frace, Scott Sammons, and Chunfu Yang African journal of laboratory medicine 2018 (1) 708 |
| Decoding noises in HIV computational genotyping. Mingrui Jia, Timothy Shaw, Xing Zhang, Dong Liu, Ye Shen, Amara E Ezeamama, Chunfu Yang, and Ming Zhang Virology 2017 Nov 511249-255 |
| Mutational Correlates of Virological Failure in Individuals Receiving a WHO-Recommended Tenofovir-Containing First-Line Regimen: An International Collaboration. Soo-Yon Rhee, Vici Varghese, Susan P Holmes, Gert U Van Zyl, Kim Steegen, Mark A Boyd, David A Cooper, Sabin Nsanzimana, Shanmugam Saravanan, Charlotte Charpentier, Tulio de Oliveira, Mary-Ann A Etiebet, Federico Garcia, Dominique Goedhals, Perpetua Gomes, Huldrych F Günthard, Raph L Hamers, Christopher J Hoffmann, Gillian Hunt, Awachana Jiamsakul, Pontiano Kaleebu, Phyllis Kanki, Rami Kantor, Bernhard Kerschberger, Vincent C Marconi, Jean D'amour Ndahimana, Nicaise Ndembi, Nicole Ngo-Giang-Huong, Casper Rokx, Maria M Santoro, Jonathan M Schapiro, Daniel Schmidt, Lillian Seu, Kim C E Sigaloff, Sunee Sirivichayakul, Lindiwe Skhosana, Henry Sunpath, Michele Tang, Chunfu Yang, Sergio Carmona, Ravindra K Gupta, and Robert W Shafer EBioMedicine 2017 Apr 18225-235 |
| Prevalence and dynamics of the K65R drug resistance mutation in HIV-1-infected infants exposed to maternal therapy with lamivudine, zidovudine and either nevirapine or nelfinavir in breast milk. Seth C Inzaule, Paul J Weidle, Chunfu Yang, Kenneth Ndiege, Raph L Hamers, Tobias F Rinke de Wit, Timothy Thomas, and Clement Zeh The Journal of antimicrobial chemotherapy 2016 Mar |
| HIV-1 Drug Resistance Mutations: Potential Applications for Point-of-Care Genotypic Resistance Testing. Soo-Yon Rhee, Michael R Jordan, Elliot Raizes, Arlene Chua, Neil Parkin, Rami Kantor, Gert U Van Zyl, Irene Mukui, Mina C Hosseinipour, Lisa M Frenkel, Nicaise Ndembi, Raph L Hamers, Tobias F Rinke de Wit, Carole L Wallis, Ravindra K Gupta, Joseph Fokam, Clement Zeh, Jonathan M Schapiro, Sergio Carmona, David Katzenstein, Michele Tang, Avelin F Aghokeng, Tulio de Oliveira, Annemarie M J Wensing, Joel E Gallant, Mark A Wainberg, Douglas D Richman, Joseph E Fitzgibbon, Marco Schito, Silvia Bertagnolio, Chunfu Yang, and Robert W Shafer PloS one 2015 (12) e0145772 |
| Simultaneous Detection of Major Drug Resistance Mutations of HIV-1 Subtype B Viruses from Dried Blood Spot Specimens by Multiplex Allele-specific Assay. Guoqing Zhang, Fangping Cai, Ivette Lorenzana de Rivera, Zhiyong Zhou, Jing Zhang, John Nkengasong, Feng Gao, and Chunfu Yang Journal of clinical microbiology 2015 Nov |
| Prevalence of transmitted HIV-1 drug resistance among young adults attending HIV counselling and testing clinics in Kigali, Rwanda. Mwumvaneza Mutagoma, Jean d'Amour Ndahimana, Eugenie Kayirangwa, Anicet G Dahourou, Helen Balisanga, Joshua R DeVos, David McAlister, Chunfu Yang, Silvia Bertagnolio, David J Riedel, and Sabin Nsanzimana Antiviral therapy 2016 (3) 247-51 |
| Comparative genomic analysis reveals occurrence of genetic recombination in virulent Cryptosporidium hominis subtypes and telomeric gene duplications in Cryptosporidium parvum. Yaqiong Guo, Kevin Tang, Lori A Rowe, Na Li, Dawn M Roellig, Kristine Knipe, Michael Frace, Chunfu Yang, Yaoyu Feng, and Lihua Xiao BMC Genomics 2015 16320 |
| Geographic and temporal trends in the molecular epidemiology and genetic mechanisms of transmitted HIV-1 drug resistance: an individual-patient- and sequence-level meta-analysis. Soo-Yon Rhee, Jose Luis Blanco, Michael R Jordan, Jonathan Taylor, Philippe Lemey, Vici Varghese, Raph L Hamers, Silvia Bertagnolio, Tobias F Rinke de Wit, Avelin F Aghokeng, Jan Albert, Radko Avi, Santiago Avila-Rios, Pascal O Bessong, James I Brooks, Charles A B Boucher, Zabrina L Brumme, Michael P Busch, Hermann Bussmann, Marie-Laure Chaix, Bum Sik Chin, Toni T D'Aquin, Cillian F De Gascun, Anne Derache, Diane Descamps, Alaka K Deshpande, Cyrille F Djoko, Susan H Eshleman, Herve Fleury, Pierre Frange, Seiichiro Fujisaki, P Richard Harrigan, Junko Hattori, Africa Holguin, Gillian M Hunt, Hiroshi Ichimura, Pontiano Kaleebu, David Katzenstein, Sasisopin Kiertiburanakul, Jerome H Kim, Sung Soon Kim, Yanpeng Li, Irja Lutsar, Lynn Morris, Nicaise Ndembi, Kee Peng Ng, Ramesh S Paranjape, Martine Peeters, Mario Poljak, Matt A Price, Manon L Ragonnet-Cronin, Gustavo Reyes-Terán, Morgane Rolland, Sunee Sirivichayakul, Davey M Smith, Marcelo A Soares, Vincent V Soriano, Deogratius Ssemwanga, Maja Stanojevic, Mariane A Stefani, Wataru Sugiura, Somnuek Sungkanuparph, Amilcar Tanuri, Kok Keng Tee, Hong-Ha M Truong, David A M C van de Vijver, Nicole Vidal, Chunfu Yang, Rongge Yang, Gonzalo Yebra, John P A Ioannidis, Anne-Mieke Vandamme, and Robert W Shafer PLoS Med. 2015 Apr 12(4) e1001810 |
| Subtyping novel zoonotic pathogen Cryptosporidium chipmunk genotype I. Yaqiong Guo, Elizabeth Cebelinski, Christine Matusevich, Kerri A Alderisio, Marianne Lebbad, John McEvoy, Dawn M Roellig, Chunfu Yang, Yaoyu Feng, and Lihua Xiao J. Clin. Microbiol. 2015 May 53(5) 1648-54 |
| Viral Genetic Diversity and Polymorphisms in a Cohort of HIV-1-Infected Patients Eligible for Initiation of Antiretroviral Therapy in Abuja, Nigeria. Karidia Diallo, Du-Ping Zheng, Erin K Rottinghaus, Orji Bassey, and Chunfu Yang AIDS Res. Hum. Retroviruses 2015 May (5) 564-75 |
| Limited utility of dried-blood- and plasma spot-based screening for antiretroviral treatment failure with Cobas Ampliprep/TaqMan HIV-1 version 2.0. Souleymane Sawadogo, Andreas Shiningavamwe, Joy Chang, Andrew D Maher, Guoqing Zhang, Chunfu Yang, Esegiel Gaeb, Harold Kaura, Dennis Ellenberger, and David W Lowrance J. Clin. Microbiol. 2014 Nov 52(11) 3878-83 |
| Molecular characterization of ambiguous mutations in HIV-1 polymerase gene: implications for monitoring HIV infection status and drug resistance. Du-Ping Zheng, Margarida Rodrigues, Ebi Bile, Duc B Nguyen, Karidia Diallo, Joshua R DeVos, John N Nkengasong, and Chunfu Yang PLoS ONE 2013 8(10) e77649 |
| Simultaneous detection of major drug resistance mutations in the protease and reverse transcriptase genes for HIV-1 subtype C by use of a multiplex allele-specific assay. Guoqing Zhang, Fangping Cai, Zhiyong Zhou, Joshua DeVos, Nick Wagar, Karidia Diallo, Isaac Zulu, Nellie Wadonda-Kabondo, Jeffrey S A Stringer, Paul J Weidle, Clement B Ndongmo, Izukanji Sikazwe, Abdoulaye Sarr, Matthew Kagoli, John Nkengasong, Feng Gao, and Chunfu Yang J. Clin. Microbiol. 2013 Nov 51(11) 3666-74 |
| Evaluation of a dried blood and plasma collection device, SampleTanker(®), for HIV type 1 drug resistance genotyping in patients receiving antiretroviral therapy. Karidia Diallo, Erica Lehotzky, Jing Zhang, Zhiyong Zhou, Ivette Lorenzana de Rivera, Wendy E Murillo, John Nkengasong, Jennifer Sabatier, Guoqing Zhang, and Chunfu Yang AIDS Res. Hum. Retroviruses 2014 Jan 30(1) 67-73 |
| Field evaluation of a broadly sensitive HIV-1 in-house genotyping assay for use with both plasma and dried blood spot specimens in a resource-limited country. Seth Inzaule, Chunfu Yang, Alex Kasembeli, Lillian Nafisa, Jully Okonji, Boaz Oyaro, Richard Lando, Lisa A Mills, Kayla Laserson, Timothy Thomas, John Nkengasong, and Clement Zeh J. Clin. Microbiol. 2013 Feb 51(2) 529-39 |
| Comparison of Ahlstrom grade 226, Munktell TFN, and Whatman 903 filter papers for dried blood spot specimen collection and subsequent HIV-1 load and drug resistance genotyping analysis. Erin Rottinghaus, Ebi Bile, Mosetsanagape Modukanele, Maruping Maruping, Madisa Mine, John Nkengasong, and Chunfu Yang J. Clin. Microbiol. 2013 Jan 51(1) 55-60 |
| Comparison of HIV-1 resistance profiles in plasma RNA versus PBMC DNA in heavily treated patients in Honduras, a resource-limited country. Karidia Diallo, Wendy E Murillo, Ivette Lorenzana de Rivera, Jan Albert, Zhiyong Zhou, John Nkengasong, Guoqing Zhang, Jennifer F Sabatier, and Chunfu Yang Int J Mol Epidemiol Genet 2012 3(1) 56-65 |
| Dried blood spot specimens are a suitable alternative sample type for HIV-1 viral load measurement and drug resistance genotyping in patients receiving first-line antiretroviral therapy. Erin K Rottinghaus, Richard Ugbena, Karidia Diallo, Orji Bassey, Aderemi Azeez, Joshua DeVos, Guoqing Zhang, John Aberle-Grasse, John Nkengasong, and Chunfu Yang Clin. Infect. Dis. 2012 Apr 54(8) 1187-95 |
| Optimization of a low cost and broadly sensitive genotyping assay for HIV-1 drug resistance surveillance and monitoring in resource-limited settings. Zhiyong Zhou, Nick Wagar, Joshua R DeVos, Erin Rottinghaus, Karidia Diallo, Duc B Nguyen, Orji Bassey, Richard Ugbena, Nellie Wadonda-Kabondo, Michelle S McConnell, Isaac Zulu, Benson Chilima, John Nkengasong, and Chunfu Yang PLoS ONE 2011 6(11) e28184 |
- Page last reviewed:Mar 16, 2019
- Page last updated:Mar 26, 2020
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