CDC-Authored Genomics and Precision Health Publications Database
Last data update: Jun 11, 2024. (Total: 6166 publications)
Query Trace: Warren D [original query] |
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Travel surveillance uncovers dengue virus dynamics and introductions in the Caribbean
Taylor-Salmon E , Hill V , Paul LM , Koch RT , Breban MI , Chaguza C , Sodeinde A , Warren JL , Bunch S , Cano N , Cone M , Eysoldt S , Garcia A , Gilles N , Hagy A , Heberlein L , Jaber R , Kassens E , Colarusso P , Davis A , Baudin S , Rico E , Mejía-Echeverri Á , Scott B , Stanek D , Zimler R , Muñoz-Jordán JL , Santiago GA , Adams LE , Paz-Bailey G , Spillane M , Katebi V , Paulino-Ramírez R , Mueses S , Peguero A , Sánchez N , Norman FF , Galán JC , Huits R , Hamer DH , Vogels CBF , Morrison A , Michael SF , Grubaugh ND . Nat Commun 2024 15 (1) 3508 |
A standardised method for interpreting the association between mutations and phenotypic drug resistance in Mycobacterium tuberculosis.
Miotto P , Tessema B , Tagliani E , Chindelevitch L , Starks AM , Emerson C , Hanna D , Kim PS , Liwski R , Zignol M , Gilpin C , Niemann S , Denkinger CM , Fleming J , Warren RM , Crook D , Posey J , Gagneux S , Hoffner S , Rodrigues C , Comas I , Engelthaler DM , Murray M , Alland D , Rigouts L , Lange C , Dheda K , Hasan R , Ranganathan UDK , McNerney R , Ezewudo M , Cirillo DM , Schito M , Köser CU , Rodwell TC . Eur Respir J 2017 50 (6) |
A phylogeographic description of histoplasma capsulatum in the United States
Bagal UR , Gade L , Benedict K , Howell V , Christophe N , Gibbons-Burgener S , Hallyburton S , Ireland M , McCracken S , Metobo AK , Signs K , Warren KA , Litvintseva AP , Chow NA . J Fungi (Basel) 2023 9 (9) |
Population structure and antimicrobial resistance patterns of Salmonella Typhi and Paratyphi A amid a phased municipal vaccination campaign in Navi Mumbai, India
da Silva KE , Date K , Hirani N , LeBoa C , Jayaprasad N , Borhade P , Warren J , Shimpi R , Hoffman SA , Mikoleit M , Bhatnagar P , Cao Y , Haldar P , Harvey P , Zhang C , Daruwalla S , Dharmapalan D , Gavhane J , Joshi S , Rai R , Rathod V , Shetty K , Warrier DS , Yadav S , Chakraborty D , Bahl S , Katkar A , Kunwar A , Yewale V , Dutta S , Luby SP , Andrews JR . mBio 2023 14 (4) e0117923 |
Development of treatment-decision algorithms for children evaluated for pulmonary tuberculosis: an individual participant data meta-analysis.
Gunasekera KS , Marcy O , Muñoz J , Lopez-Varela E , Sekadde MP , Franke MF , Bonnet M , Ahmed S , Amanullah F , Anwar A , Augusto O , Aurilio RB , Banu S , Batool I , Brands A , Cain KP , Carratalá-Castro L , Caws M , Click ES , Cranmer LM , García-Basteiro AL , Hesseling AC , Huynh J , Kabir S , Lecca L , Mandalakas A , Mavhunga F , Myint AA , Myo K , Nampijja D , Nicol MP , Orikiriza P , Palmer M , Sant'Anna CC , Siddiqui SA , Smith JP , Song R , Thuong Thuong NT , Ung V , van der Zalm MM , Verkuijl S , Viney K , Walters EG , Warren JL , Zar HJ , Marais BJ , Graham SM , Debray TPA , Cohen T , Seddon JA . Lancet Child Adolesc Health 2023 7 (5) 336-346 |
CATMoS: Collaborative Acute Toxicity Modeling Suite.
Mansouri K , Karmaus AL , Fitzpatrick J , Patlewicz G , Pradeep P , Alberga D , Alepee N , Allen TEH , Allen D , Alves VM , Andrade CH , Auernhammer TR , Ballabio D , Bell S , Benfenati E , Bhattacharya S , Bastos JV , Boyd S , Brown JB , Capuzzi SJ , Chushak Y , Ciallella H , Clark AM , Consonni V , Daga PR , Ekins S , Farag S , Fedorov M , Fourches D , Gadaleta D , Gao F , Gearhart JM , Goh G , Goodman JM , Grisoni F , Grulke CM , Hartung T , Hirn M , Karpov P , Korotcov A , Lavado GJ , Lawless M , Li X , Luechtefeld T , Lunghini F , Mangiatordi GF , Marcou G , Marsh D , Martin T , Mauri A , Muratov EN , Myatt GJ , Nguyen DT , Nicolotti O , Note R , Pande P , Parks AK , Peryea T , Polash AH , Rallo R , Roncaglioni A , Rowlands C , Ruiz P , Russo DP , Sayed A , Sayre R , Sheils T , Siegel C , Silva AC , Simeonov A , Sosnin S , Southall N , Strickland J , Tang Y , Teppen B , Tetko IV , Thomas D , Tkachenko V , Todeschini R , Toma C , Tripodi I , Trisciuzzi D , Tropsha A , Varnek A , Vukovic K , Wang Z , Wang L , Waters KM , Wedlake AJ , Wijeyesakere SJ , Wilson D , Xiao Z , Yang H , Zahoranszky-Kohalmi G , Zakharov AV , Zhang FF , Zhang Z , Zhao T , Zhu H , Zorn KM , Casey W , Kleinstreuer NC . Environ Health Perspect 2021 129 (4) 47013 |
Yersinia enterocolitica Outbreak Associated with Pasteurized Milk
Gruber JF , Morris S , Warren KA , Kline KE , Schroeder B , Dettinger L , Husband B , Pollard K , Davis C , Miller J , Weltman A , Mattioli M , Ray L , Tarr C , Longenberger AH . Foodborne Pathog Dis 2021 18 (7) 448-454 |
Cancer Informatics for Cancer Centers (CI4CC): Building a Community Focused on Sharing Ideas and Best Practices to Improve Cancer Care and Patient Outcomes.
Barnholtz-Sloan JS , Rollison DE , Basu A , Borowsky AD , Bui A , DiGiovanna J , Garcia-Closas M , Genkinger JM , Gerke T , Induni M , Lacey JVJr , Mirel L , Permuth JB , Saltz J , Shenkman EA , Ulrich CM , Zheng WJ , Nadaf S , Kibbe WA . JCO Clin Cancer Inform 2020 4 108-116 |
A landscape of genomic alterations at the root of a near-untreatable tuberculosis epidemic.
Klopper M , Heupink TH , Hill-Cawthorne G , Streicher EM , Dippenaar A , de Vos M , Abdallah AM , Limberis J , Merker M , Burns S , Niemann S , Dheda K , Posey J , Pain A , Warren RM . BMC Med 2020 18 (1) 24 |
Whole Genome Sequencing to Identify Drivers of Carbapenem-Resistant Klebsiella pneumoniae Transmission Within and Between Regional Long-Term Acute Care Hospitals.
Han JH , Lapp Z , Bushman F , Lautenbach E , Goldstein EJC , Mattei L , Hofstaedter CE , Kim D , Nachamkin I , Garrigan C , Jain T , Bilker W , Wolford HM , Slayton RB , Wise J , Tolomeo P , Snitkin ES . Antimicrob Agents Chemother 2019 63 (11) |
Bedaquiline Microheteroresistance after Cessation of Tuberculosis Treatment.
de Vos M , Ley SD , Wiggins KB , Derendinger B , Dippenaar A , Grobbelaar M , Reuter A , Dolby T , Burns S , Schito M , Engelthaler DM , Metcalfe J , Theron G , van Rie A , Posey J , Warren R , Cox H . N Engl J Med 2019 380 (22) 2178-2180 |
Integrating standardized whole genome sequence analysis with a global Mycobacterium tuberculosis antibiotic resistance knowledgebase.
Ezewudo M , Borens A , Chiner-Oms A , Miotto P , Chindelevitch L , Starks AM , Hanna D , Liwski R , Zignol M , Gilpin C , Niemann S , Kohl TA , Warren RM , Crook D , Gagneux S , Hoffner S , Rodrigues C , Comas I , Engelthaler DM , Alland D , Rigouts L , Lange C , Dheda K , Hasan R , McNerney R , Cirillo DM , Schito M , Rodwell TC , Posey J . Sci Rep 2018 8 (1) 15382 |
Case-control meta-analysis of blood DNA methylation and autism spectrum disorder.
Andrews SV , Sheppard B , Windham GC , Schieve LA , Schendel DE , Croen LA , Chopra P , Alisch RS , Newschaffer CJ , Warren ST , Feinberg AP , Fallin MD , Ladd-Acosta C . Mol Autism 2018 9 40 |
Prevalence of Autism Spectrum Disorder Among Children Aged 8 Years - Autism and Developmental Disabilities Monitoring Network, 11 Sites, United States, 2014.
Baio J , Wiggins L , Christensen DL , Maenner MJ , Daniels J , Warren Z , Kurzius-Spencer M , Zahorodny W , Robinson Rosenberg C , White T , Durkin MS , Imm P , Nikolaou L , Yeargin-Allsopp M , Lee LC , Harrington R , Lopez M , Fitzgerald RT , Hewitt A , Pettygrove S , Constantino JN , Vehorn A , Shenouda J , Hall-Lande J , Van Naarden Braun K , Dowling NF . MMWR Surveill Summ 2018 67 (6) 1-23 |
A Multicountry Molecular Analysis of Salmonella enterica Serovar Typhi With Reduced Susceptibility to Ciprofloxacin in Sub-Saharan Africa.
Al-Emran HM , Eibach D , Krumkamp R , Ali M , Baker S , Biggs HM , Bjerregaard-Andersen M , Breiman RF , Clemens JD , Crump JA , Cruz Espinoza LM , Deerin J , Dekker DM , Gassama Sow A , Hertz JT , Im J , Ibrango S , von Kalckreuth V , Kabore LP , Konings F , Lofberg SV , Meyer CG , Mintz ED , Montgomery JM , Olack B , Pak GD , Panzner U , Park SE , Razafindrabe JL , Rabezanahary H , Rakotondrainiarivelo JP , Rakotozandrindrainy R , Raminosoa TM , Schutt-Gerowitt H , Sampo E , Soura AB , Tall A , Warren M , Wierzba TF , May J , Marks F . Clin Infect Dis 2016 62 Suppl 1 S42-6 |
Genetic Determinants of Drug Resistance in Mycobacterium tuberculosis and Their Diagnostic Value.
Farhat MR , Sultana R , Iartchouk O , Bozeman S , Galagan J , Sisk P , Stolte C , Nebenzahl-Guimaraes H , Jacobson K , Sloutsky A , Kaur D , Posey J , Kreiswirth BN , Kurepina N , Rigouts L , Streicher EM , Victor TC , Warren RM , van Soolingen D , Murray M . Am J Respir Crit Care Med 2016 194 (5) 621-30 |
Genome of Rhodnius prolixus, an insect vector of Chagas disease, reveals unique adaptations to hematophagy and parasite infection.
Mesquita RD , Vionette-Amaral RJ , Lowenberger C , Rivera-Pomar R , Monteiro FA , Minx P , Spieth J , Carvalho AB , Panzera F , Lawson D , Torres AQ , Ribeiro JM , Sorgine MH , Waterhouse RM , Montague MJ , Abad-Franch F , Alves-Bezerra M , Amaral LR , Araujo HM , Araujo RN , Aravind L , Atella GC , Azambuja P , Berni M , Bittencourt-Cunha PR , Braz GR , Calderon-Fernandez G , Carareto CM , Christensen MB , Costa IR , Costa SG , Dansa M , Daumas-Filho CR , De-Paula IF , Dias FA , Dimopoulos G , Emrich SJ , Esponda-Behrens N , Fampa P , Fernandez-Medina RD , da Fonseca RN , Fontenele M , Fronick C , Fulton LA , Gandara AC , Garcia ES , Genta FA , Giraldo-Calderon GI , Gomes B , Gondim KC , Granzotto A , Guarneri AA , Guigo R , Harry M , Hughes DS , Jablonka W , Jacquin-Joly E , Juarez MP , Koerich LB , Latorre-Estivalis JM , Lavore A , Lawrence GG , Lazoski C , Lazzari CR , Lopes RR , Lorenzo MG , Lugon MD , Majerowicz D , Marcet PL , Mariotti M , Masuda H , Megy K , Melo AC , Missirlis F , Mota T , Noriega FG , Nouzova M , Nunes RD , Oliveira RL , Oliveira-Silveira G , Ons S , Pagola L , Paiva-Silva GO , Pascual A , Pavan MG , Pedrini N , Peixoto AA , Pereira MH , Pike A , Polycarpo C , Prosdocimi F , Ribeiro-Rodrigues R , Robertson HM , Salerno AP , Salmon D , Santesmasses D , Schama R , Seabra-Junior ES , Silva-Cardoso L , Silva-Neto MA , Souza-Gomes M , Sterkel M , Taracena ML , Tojo M , Tu ZJ , Tubio JM , Ursic-Bedoya R , Venancio TM , Walter-Nuno AB , Wilson D , Warren WC , Wilson RK , Huebner E , Dotson EM , Oliveira PL . Proc Natl Acad Sci U S A 2015 112 (48) 14936-14941 |
Mycobacterium tuberculosis pncA polymorphisms that do not confer pyrazinamide resistance at a breakpoint concentration of 100 µg/ml in MGIT.
Whitfield MG , Warren RM , Streicher EM , Sampson SL , Sirgel FA , van Helden PD , Mercante A , Willby M , Hughes K , Birkness K , Morlock G , van Rie A , Posey JE . J Clin Microbiol 2015 |
Development and validation of an internationally-standardized, high-resolution capillary gel-based electrophoresis PCR-ribotyping protocol for Clostridium difficile.
Fawley WN , Knetsch CW , MacCannell DR , Harmanus C , Du T , Mulvey MR , Paulick A , Anderson L , Kuijper EJ , Wilcox MH . PLoS One 2015 10 (2) e0118150 |
Novel gentamicin resistance genes in Campylobacter isolated from humans and retail meats in the USA.
Zhao S , Mukherjee S , Chen Y , Li C , Young S , Warren M , Abbott J , Friedman S , Kabera C , Karlsson M , McDermott PF . J Antimicrob Chemother 2015 70 (5) 1314-21 |
Filovirus RefSeq entries: evaluation and selection of filovirus type variants, type sequences, and names.
Kuhn JH , Andersen KG , Bao Y , Bavari S , Becker S , Bennett RS , Bergman NH , Blinkova O , Bradfute S , Brister JR , Bukreyev A , Chandran K , Chepurnov AA , Davey RA , Dietzgen RG , Doggett NA , Dolnik O , Dye JM , Enterlein S , Fenimore PW , Formenty P , Freiberg AN , Garry RF , Garza NL , Gire SK , Gonzalez JP , Griffiths A , Happi CT , Hensley LE , Herbert AS , Hevey MC , Hoenen T , Honko AN , Ignatyev GM , Jahrling PB , Johnson JC , Johnson KM , Kindrachuk J , Klenk HD , Kobinger G , Kochel TJ , Lackemeyer MG , Leroy EM , Lever MS , Muhlberger E , Netesov SV , Olinger GG , Omilabu SA , Palacios G , Panchal RG , Park DJ , Patterson JL , Paweska JT , Peters CJ , Pettitt J , Pitt L , Radoshitzky SR , Ryabchikova EI , Saphire EO , Sabeti PC , Sealfon R , Smither SJ , Sullivan NJ , Swanepoel R , Takada A , Towner JS , van der Groen G , Volchkov VE , Volchkova VA , Wahl-Jensen V , Warren TK , Warfield KL , Weidmann M , Nichol ST . Viruses 2014 6 (9) 3663-82 |
Identification of molecular markers associated with alteration of receptor-binding specificity in a novel genotype of highly pathogenic avian influenza A(H5N1) viruses detected in Cambodia in 2013.
Rith S , Davis CT , Duong V , Sar B , Horm SV , Chin S , Ly S , Laurent D , Richner B , Oboho I , Jang Y , Davis W , Thor S , Balish A , Iuliano AD , Sorn S , Holl D , Sok T , Seng H , Tarantola A , Tsuyuoka R , Parry A , Chea N , Allal L , Kitsutani P , Warren D , Prouty M , Horwood P , Widdowson MA , Lindstrom S , Villanueva J , Donis R , Cox N , Buchy P . J Virol 2014 88 (23) 13897-909 |
Robust regression analysis of copy number variation data based on a univariate score.
Satten GA , Allen AS , Ikeda M , Mulle JG , Warren ST . PLoS One 2014 9 (2) e86272 |
The effects of impact vibration on peripheral blood vessels and nerves
Krajnak KM , Waugh S , Johnson C , Miller GR , Xu X , Warren C , Dong RG . Ind Health 2013 51 (6) 572-80 |
Genomic analysis identifies targets of convergent positive selection in drug-resistant Mycobacterium tuberculosis
Farhat MR , Shapiro BJ , Kieser KJ , Sultana R , Jacobson KR , Victor TC , Warren RM , Streicher EM , Calver A , Sloutsky A , Kaur D , Posey JE , Plikaytis B , Oggioni MR , Gardy JL , Johnston JC , Rodrigues M , Tang PK , Kato-Maeda M , Borowsky ML , Muddukrishna B , Kreiswirth BN , Kurepina N , Galagan J , Gagneux S , Birren B , Rubin EJ , Lander ES , Sabeti PC , Murray M . Nat Genet 2013 45 (10) 1183-9 |
Virus nomenclature below the species level: a standardized nomenclature for natural variants of viruses assigned to the family Filoviridae
Kuhn JH , Bao Y , Bavari S , Becker S , Bradfute S , Brister JR , Bukreyev AA , Chandran K , Davey RA , Dolnik O , Dye JM , Enterlein S , Hensley LE , Honko AN , Jahrling PB , Johnson KM , Kobinger G , Leroy EM , Lever MS , Muhlberger E , Netesov SV , Olinger GG , Palacios G , Patterson JL , Paweska JT , Pitt L , Radoshitzky SR , Saphire EO , Smither SJ , Swanepoel R , Towner JS , van der Groen G , Volchkov VE , Wahl-Jensen V , Warren TK , Weidmann M , Nichol ST . Arch Virol 2013 158 (1) 301-11 |
Age-associated DNA methylation in pediatric populations.
Alisch RS , Barwick BG , Chopra P , Myrick LK , Satten GA , Conneely KN , Warren ST . Genome Res 2012 22 (4) 623-32 |
Toll-like and adenosine receptor expression in injured skeletal muscle
Warren GL , Hulderman T , Liston A , Simeonova PP . Muscle Nerve 2011 44 (1) 85-92 |
Microdeletions of 3q29 confer high risk for schizophrenia
Mulle JG , Dodd AF , McGrath JA , Wolyniec PS , Mitchell AA , Shetty AC , Sobreira NL , Valle D , Rudd MK , Satten G , Cutler DJ , Pulver AE , Warren ST . Am J Hum Genet 2010 87 (2) 229-36 |
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- Page last updated:Jun 11, 2024
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