Skip directly to search
Skip directly to A to Z list
Skip directly to navigation
Skip directly to page options
Skip directly to site content
Start of Search Controls
Search Form Controls
Search The CDC
submit
CDC A-Z Index
MENU
CDC A-Z
SEARCH
A
B
C
D
E
F
G
H
I
J
K
L
M
N
O
P
Q
R
S
T
U
V
W
X
Y
Z
#
Search Form Controls
Search The CDC
submit
CDC A-Z Index
Public Health Genomics and Precision Health Knowledge Base (v9.0)
PHGKB
About
Public Health Genomics Branch
PHGKB Weekly Horizon Scan
Genomics Precision Health Scan
Advanced Molecular Detection Clips
Non-Genomics Precision Health Scan
CDC-authored Publications Scan
Specialized PHGKB
Cancer PHGKB
Diabetes PHGKB
Economic Evaluation PHGKB
Environmental Health PHGKB
Family Health History PHGKB
Health Equity PHGKB
HLBS-PopOmics
Infectious Diseases PHGKB
Implementation Science PHGKB
Neurological Disorders PHGKB
Pharmacogenomics PHGKB
Primary Immune Deficiency Diseases PHGKB
Rare Diseases PHGKB
Reproductive and Child Health PHGKB
All Databases
COVID-19 GPH (47360)
CDC/NIH Web Information Database (32189)
CDC-Authored Genomics and Precision Health Publications Database (6062)
Precision Health Database (63767)
Tier-Classified Guidelines Database (534)
Pathogen Advanced Molecular Detection Database (26823)
All of Us Reports and Publications Database (675)
Human Genome Epidemiology
Human Genome Epidemiology Literature Finder (226691)
Epigenetic Epidemiology Publications Database (22811)
Release Note
Contact Us
CDC-Authored Genomics and Precision Health Publications Database|Home|Public Health Genomics and Precision Health Knowledge Base (PHGKB)
CDC-Authored Genomics and Precision Health Publications Database
Last data update: Apr 29, 2024
. (Total: 6062 publications)
All
Cancer
Diabetes
Economic
Equity
Environmental
FHH
HLBS
ID
Implementation
ND
PGx
PI
Rare
RCH
dataset
Filtered By:
Select to fine-tune your search
Year
Journal
Next
Records 1-30 (of 140 Records)
Query Trace:
Foodborne[original query]
Genomic and phenotypic characterization of shiga toxin-producing Escherichia albertii strains isolated from wild birds in a major agricultural region in California
Carter MQ , Quiñones B , He X , Pham A , Carychao D , Cooley MB , Lo CC , Chain PSG ,
Lindsey RL
,
Bono JL .
Microorganisms 2023 11 (11)
Evaluation of whole and core genome multilocus sequence typing allele schemes for Salmonella enterica outbreak detection in a national surveillance network, PulseNet USA
Leeper MM
,
Tolar BM
,
Griswold T
,
Vidyaprakash E
,
Hise KB
,
Williams GM
,
Im SB
,
Chen JC
,
Pouseele H ,
Carleton HA
.
Front Microbiol 2023 14 1254777
An improved framework for detecting discrete epidemiologically meaningful partitions in hierarchically clustered genetic data
Jacobson DK
,
Low R
,
Plucinski MM
,
Barratt JLN
.
Bioinform Adv 2023 3 (1) vbad118
Predicting food sources of Listeria monocytogenes based on genomic profiling using random forest model
Gu W
,
Cui Z
,
Stroika S
,
Carleton HA
,
Conrad A
,
Katz LS
,
Richardson LC
,
Hunter J
,
Click ES
,
Bruce BB
.
Foodborne Pathog Dis 2023 20 (12) 579-586
The limit of detection of the BioFire FilmArray gastrointestinal panel for the foodborne parasite Cyclospora cayetanensis
Peterson A
,
Richins T
,
Houghton K
,
Mishina M
,
Sharma S
,
Sambhara S
,
Jacobson D
,
Qvarnstrom Y
,
Cama V
.
Diagn Microbiol Infect Dis 2023 107 (2) 116030
Evaluation of the Illumina iSeq whole genome sequencing system for enteric disease surveillance and outbreak detection
Trees E
,
Poates A
,
Sabol A
,
LaFon P
,
Truong J
,
Lindsey R
.
J Microbiol Methods 2023 211 106784
Cyclospora cayetanensis comprises at least three species that cause human cyclosporiasis
Barratt JLN
,
Shen J
,
Houghton K
,
Richins T
,
Sapp SGH
,
Cama V
,
Arrowood MJ
,
Straily A
,
Qvarnstrom Y
.
Parasitology 2023 150 (3) 269-285
Multinational outbreak of Listeria monocytogenes infections linked to enoki mushrooms imported from The Republic of Korea 2016-2020
Pereira E ,
Conrad A
,
Tesfai A ,
Palacios A
,
Kandar R , Kearney A , Locas A , Jamieson F , Elliot E ,
Otto M
,
Kurdilla K , Tijerina M , Son I , Pettengill JB , Chen Y , Fox T , Lane C , Aguillon R ,
Huffman J
,
Sheau Fong Low M
,
Wise M
,
Edwards L , Bidol S , Blankenship HM , Rosen HE , Leclercq A , Lecuit M , Tourdjman M , Herber H , Singleton LS , Viazis S , Bazaco MC .
J Food Prot 2023 86 (7) 100101
Corrigendum: Whole Genome Sequencing: Bridging One-Health Surveillance of Foodborne Diseases.
Gerner-Smidt P
,
Besser J
,
Concepción-Acevedo J
,
Folster JP
,
Huffman J
,
Joseph LA
,
Kucerova Z
,
Nichols MC
,
Schwensohn CA
,
Tolar B
.
Front Public Health 2019 7 365
Antimicrobial-resistant nontyphoidal Salmonella infection following international travel - United States, 2018-2019
Ford L
,
Shah HJ
,
Eikmeier D , Hanna S ,
Chen J
,
Tagg KA
,
Langley G
,
Payne DC
,
Plumb ID
.
J Infect Dis 2023 228 (5) 533-541
Evaluation of core genome and whole genome multilocus sequence typing schemes for Campylobacter jejuni and Campylobacter coli outbreak detection in the USA
Joseph LA
,
Griswold T
,
Vidyaprakash E
,
Im SB
,
Williams GM
,
Pouseele HA ,
Hise KB
,
Carleton HA
.
Microb Genom 2023 9 (5)
An Overview of Foodborne Sample-Initiated Retrospective Outbreak Investigations and Interagency Collaboration in the United States.
Wellman A , Bazaco M , Blessington T , Pightling A , Dwarka A , Hintz L ,
Wise ME
,
Gieraltowski L
,
Conrad A
,
Nguyen TA
,
Hise K
,
Viazis S , Beal J .
J Food Prot 2023 86 (6) 100089
Salmonella Outbreaks Linked to Beef, United States, 2012-2019.
Canning M
,
Birhane MG
,
Dewey-Mattia D
,
Lawinger H
,
Cote A ,
Gieraltowski L
,
Schwensohn C
,
Tagg KA
,
Francois Watkins LK
,
Park Robyn M
,
Marshall KE
.
J Food Prot 2023 86 (5) 100071
An Outbreak Investigation of Vibrio parahaemolyticus Infections in the United States Linked to Crabmeat Imported from Venezuela: 2018.
Seelman SL , Whitney BM ,
Stokes EK
,
Elliot EL ,
Griswold T
,
Patel K
,
Bloodgood S , Jones JL , Cripe J , Cornell J , Luo Y , Williams DL , Boyle MM , Cahoon J , Brennan C , Wildey LM , Grover VM , Simonson S , Crosby AJ , Bazaco MC , Viazis S .
Foodborne Pathog Dis 2023 20 (4) 123-131
Optimizing hierarchical tree dissection parameters using historic epidemiologic data as 'ground truth'.
Jacobson D
,
Barratt J
.
PLoS One 2023 18 (2) e0282154
Draft Genome Sequences of 20 Clostridium botulinum Type A Isolates from Foodborne Botulism Outbreaks.
Halpin JL
,
Gómez GA
,
Dykes JK
,
Lúquez C
.
Microbiol Resour Announc 2023 12 (1) e0086822
Horizontal Gene Transfer and Loss of Serotype-Specific Genes in Listeria monocytogenes Can Lead to Incorrect Serotype Designations with a Commonly-Employed Molecular Serotyping Scheme.
Brown P ,
Kucerova Z
,
Gorski L , Chen Y , Ivanova M , Leekitcharoenphon P , Parsons C , Niedermeyer J , Jackson J , Kathariou S .
Microbiol Spectr 2022 11 (1) e0274522
Bi-national Outbreak of Salmonella Newport Infections Linked to Onions: the United States Experience.
McCormic ZD
,
Patel K
,
Higa J , Bancroft J , Donovan D , Edwards L , Cheng J , Adcock B , Bond C , Pereira E , Doyle M ,
Wise ME
,
Gieraltowski L
.
Epidemiol Infect 2022 150 1-23
Genomic Diversity, Antimicrobial Resistance, and Virulence Gene Profiles of Salmonella Serovar Kentucky Isolated from Humans, Food, and Animal Ceca Content Sources in the United States.
Tate H , Hsu CH ,
Chen JC
,
Han J , Foley SL ,
Folster JP
,
Francois Watkins LK
,
Reynolds J
,
Tillman GE , Nyirabahizi E , Zhao S .
Foodborne Pathog Dis 2022 19 (8) 509-521
The power, potential, benefits, and challenges of implementing high-throughput sequencing in food safety systems.
Imanian B , Donaghy J , Jackson T , Gummalla S , Ganesan B , Baker RC , Henderson M , Butler EK , Hong Y , Ring B , Thorp C , Khaksar R , Samadpour M , Lawless KA , MacLaren-Lee I ,
Carleton HA
,
Tian R , Zhang W , Wan J .
NPJ Sci Food 2022 6 (1) 35
Changing Diagnostic Testing Practices for Foodborne Pathogens, Foodborne Diseases Active Surveillance Network, 2012-2019.
Ray LC
,
Griffin PM
,
Wymore K , Wilson E , Hurd S , LaClair B , Wozny S , Eikmeier D , Nicholson C , Burzlaff K , Hatch J , Fankhauser M , Kubota K ,
Huang JY
,
Geissler A
,
Payne DC
,
Tack DM
.
Open Forum Infect Dis 2022 9 (8) ofac344
A 2019 Outbreak Investigation of Hepatitis A Virus Infections in the United States Linked to Imported Fresh Blackberries.
McClure M , Nsubuga J ,
Montgomery MP
,
Jenkins E , Crosby A , Schoelen D ,
Basler C
,
Ramachandran S
,
Lin Y
,
Xia GL
,
Khudaykov Y
,
Suktankar V , Wagley A , Thomas V , Woods J , Hintz L , Oliveira J , Sandoval AL , Frederick J , Hendrickson B , Gieraltowski L , Viazis S .
Food Environ Virol 2022 14 (3) 236-245
Sequencing of Enteric Bacteria: Library Preparation Procedure Matters for Accurate Identification and Characterization.
Poates A
,
Truong J ,
Lindsey R
,
Griswold T
,
Williams-Newkirk AJ
,
Carleton H
,
Trees E
.
Foodborne Pathog Dis 2022 19 (8) 569-578
Longitudinal surveillance and comparative characterization of Escherichia albertii in wild raccoons in the United States.
Hinenoya A , Wang H , Patrick EM , Zeng X , Cao L , Li XP ,
Lindsey RL
,
Gillespie B , He Q , Yamasaki S , Lin J .
Microbiol Res 2022 262 127109
Public Health Response to Multistate Salmonella Typhimurium Outbreak Associated with Prepackaged Chicken Salad, United States, 2018.
Greening BJr
,
Whitham HK
,
Aldous WK , Hall N , Garvey A , Mandernach S ,
Kahn EB
,
Nonnenmacher P
,
Snow J
,
Meltzer MI
,
Hoffmann S .
Emerg Infect Dis 2022 28 (6) 1254-1256
Whole-Genome Sequencing Reveals Multiple Subpopulations of Dominant and Persistent Lineage I Isolates of Listeria monocytogenes in Two Meat Processing Facilities during 2011-2015.
Burnett E ,
Kucerova Z
,
Freeman M
,
Kathariou S ,
Chen J
,
Smikle M .
Microorganisms 2022 10 (5)
Involvement of a putative ATP-Binding Cassette (ABC) Involved in manganese transport in virulence of Listeria monocytogenes.
Liu Y ,
Yoo BB
,
Hwang CA , Martinez MR , Datta AR , Fratamico PM .
PLoS One 2022 17 (5) e0268924
Analysis of Salmonella enterica Isolated from a Mixed-Use Watershed in Georgia, USA: Antimicrobial Resistance, Serotype Diversity, and Genetic Relatedness to Human Isolates.
Cho S , Hiott LM , House SL , Woodley TA , McMillan EA , Sharma P , Barrett JB , Adams ES ,
Brandenburg JM
,
Hise KB
,
BatemanMcDonald JM , Ottesen EA , Lipp EK , Jackson CR , Frye JG .
Appl Environ Microbiol 2022 88 (10) e0039322
PulseNet International Survey on the Implementation of Whole Genome Sequencing in Low and Middle-Income Countries for Foodborne Disease Surveillance.
Davedow T ,
Carleton H
,
Kubota K , Palm D ,
Schroeder M
,
Gerner-Smidt P
,
Al-Jardani A , Chinen I , Kam KM , Smith AM , Nadon C .
Foodborne Pathog Dis 2022 19 (5) 332-340
The Use of Whole-Genome Sequencing by the Federal Interagency Collaboration for Genomics for Food and Feed Safety in the United States.
Stevens EL ,
Carleton HA
,
Beal J , Tillman GE ,
Lindsey RL
,
Lauer AC
,
Pightling A , Jarvis KG , Ottesen A , Ramachandran P , Hintz L ,
Katz LS
,
Folster JP
,
Whichard JM
,
Trees E
,
Timme RE , McDermott P , Wolpert B , Bazaco M , Zhao S , Lindley S ,
Bruce BB
,
Griffin PM
,
Brown E , Allard M , Tallent S , Irvin K , Hoffmann M ,
Wise M
,
Tauxe R
,
Gerner-Smidt P
,
Simmons M , Kissler B , Defibaugh-Chavez S , Klimke W , Agarwala R , Lindsay J , Cook K , Austerman SR , Goldman D ,
McGarry S
,
Hale KR , Dessai U , Musser SM ,
Braden C
.
J Food Prot 2022 85 (5) 755-772
File Formats Help:
How do I view different file formats (PDF, DOC, PPT, MPEG) on this site?
Adobe PDF file
Microsoft PowerPoint file
Microsoft Word file
Microsoft Excel file
Audio/Video file
Apple Quicktime file
RealPlayer file
Text file
Zip Archive file
SAS file
ePub file
Page last reviewed:
Feb 1, 2024
Page last updated:
Apr 29, 2024
Content source:
Public Health Genomics Branch in the Division of Blood Disorders and Public Health Genomics
,
National Center on Birth Defects and Developmental Disabilities
TOP