Advanced Molecular Detection Clips Content (Published on 12/21/2023)
NEWS
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NIH Takes COVID-19/Flu Test-to-Treat Program Nationwide
Bonislawski A. 360dx, Dec 11, 2023. -
WHO says JN.1 COVID strain a 'variant of interest', poses low risk
Roy S. Reuters, Dec 19, 2023. -
COVID contact-tracing study suggests length of exposure biggest factor in disease spread
Van Beusekom M. CIDRAP, Dec 20, 2023. -
Inhaled COVID vaccines stop infection in its tracks in monkey trials
Callaway E. Nature, Dec 10, 2023. -
Tracing the origin of virulence
Duchene S. Science, Dec 14, 2023.
POLICY
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Public Health Preparedness: Building and Maintaining Infrastructure beyond the COVID-19 Pandemic
Government Accountability Office (GAO), Nov 7, 2023.
CONCEPTS / COMMENTS
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The clinical and epidemiological impacts of whole genomic sequencing on bacterial and virological agents.
Sarah Timsit et al. Infect Dis Now 2023 12 104844 -
Advancing pathogen genomics in resource-limited settings.
Paul Michael Pronyk et al. Cell Genom 2023 12 (12) 100443 -
FAIR+E pathogen data for surveillance and research: lessons from COVID-19.
Aitana Neves et al. Front Public Health 2023 12 1289945 -
Ten simple rules for starting FAIR discussions in your community.
Frédérique Belliard et al. PLoS Comput Biol 2023 12 (12) e1011668
METHODS / TOOLS
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Whole genome sequencing in the palm of your hand: how to implement a MinION Galaxy-based workflow in a food safety laboratory for rapid Salmonella spp. serotyping, virulence, and antimicrobial resistance gene identification.
Alexandre Lamas et al. Front Microbiol 2023 12 1254692 -
A laboratory framework for ongoing optimization of amplification-based genomic surveillance programs.
Connie Lam et al. Microbiol Spectr 2023 11 (6) e0220223 -
Discordance between different bioinformatic methods for identifying resistance genes from short-read genomic data, with a focus on Escherichia coli.
Timothy J Davies et al. Microb Genom 2023 12 (12) -
Nanopore adaptive sampling enriches for antimicrobial resistance genes in microbial communities.
Danielle C Wrenn et al. GigaByte 2023 12 gigabyte103 -
Visualizing and quantifying structural diversity around mobile resistance genes.
Liam P Shaw et al. Microb Genom 2023 12 (12) -
Motifs in SARS-CoV-2 evolution.
Christopher Barrett et al. RNA 2023 10 (1) 1-15 -
Reverse Genetics of Zika Virus Using a Bacterial Artificial Chromosome.
Aitor Nogales et al. Methods Mol Biol 2023 12 185-206
EVOLUTION / ECOLOGY / POPULATIONS
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Global phylogenomic diversity of Brucella abortus: spread of a dominant lineage.
Nicolette R Janke et al. Front Microbiol 2023 12 1287046 -
Phylogeographic characterization of Burkholderia pseudomallei isolated from Bangladesh.
Md Shariful Alam Jilani et al. PLoS Negl Trop Dis 2023 12 (12) e0011823 -
Genetic diversity, determinants, and dissemination of Burkholderia pseudomallei lineages implicated in melioidosis in northeast Thailand.
Rathanin Seng et al. bioRxiv 2023 12 -
Spatiotemporal evolution of SARS-CoV-2 in the Bangkok metropolitan region, Thailand, 2020-2022: implications for future outbreak preparedness.
Pakorn Aiewsakun et al. Microb Genom 2023 12 (12) -
SARS-CoV-2 Omicron variants BA.4 and BA.5 dominated the fifth COVID-19 epidemiological wave in Mexico.
Blanca Itzelt Taboada et al. Microb Genom 2023 12 (12) -
Genetic and potential antigenic evolution of influenza A(H1N1)pdm09 viruses circulating in Kenya during 2009-2018 influenza seasons.
D Collins Owuor et al. Sci Rep 2023 12 (1) 22342 -
Molecular detection and characterization of highly pathogenic H5N1 clade 2.3.4.4b avian influenza viruses among hunter-harvested wild birds provides evidence for three independent introductions into Alaska.
Andrew M Ramey et al. Virology 2023 11 109938 -
Amplicon deep sequencing of five highly polymorphic markers of Plasmodium falciparum reveals high parasite genetic diversity and moderate population structure in Ethiopia.
Abeba Gebretsadik Reda et al. Malar J 2023 12 (1) 376 -
Genetic characterization and description of Leishmania (Leishmania) ellisi sp. nov.: a new human-infecting species from the USA.
Sarah G H Sapp et al. Parasitol Res 2023 12 (1) 52
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
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The Association between PHYLOGENETIC LINEAGE AND THE SUBCLINICAL Phenotype OF PULMONARY TUBERCULOSIS: A retrospective 2-Cohort study.
Richard Long et al. J Infect 2023 12 -
The population structure of vancomycin-resistant and -susceptible Enterococcus faecium in a low-prevalence antimicrobial resistance setting is highly influenced by circulating global hospital-associated clones.
Mushtaq Al Rubaye et al. Microb Genom 2023 12 (12) -
Ancient chicken remains reveal the origins of virulence in Marek's disease virus.
Steven R Fiddaman et al. Science 2023 12 (6676) 1276-1281
DETECTION / DIAGNOSIS
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What is the functional reach of wastewater surveillance for respiratory viruses, pathogenic viruses of concern, and bacterial antibiotic resistance genes of interest?
Kevin J Sokoloski et al. Hum Genomics 2023 12 (1) 114 -
Leveraging genomic sequencing data to evaluate disease surveillance strategies.
Benjamin Anderson et al. iScience 2023 12 (12) 108488 -
Locally Acquired Melioidosis Linked to Environment - Mississippi, 2020-2023.
Julia K Petras et al. N Engl J Med 2023 12 (25) 2355-2362 -
Quantitatively assessing early detection strategies for mitigating COVID-19 and future pandemics.
Andrew Bo Liu et al. Nat Commun 2023 12 (1) 8479 -
Environmental surface monitoring as a noninvasive method for SARS-CoV-2 surveillance in community settings: Lessons from a university campus study.
Sobur Ali et al. Sci Total Environ 2023 12 169456 -
Genomic surveillance of SARS-CoV-2 reveals highest severity and mortality of delta over other variants: evidence from Cameroon.
Joseph Fokam et al. Sci Rep 2023 12 (1) 21654 -
Establishing a molecular toolbox of lineage-specific real-time RT-PCR assays for the characterization of foot-and-mouth disease viruses circulating in Asia.
Meruyert A Saduakassova et al. Front Vet Sci 2023 12 1271690 -
Genotyping of European Toxoplasma gondii strains by a new high-resolution next-generation sequencing-based method.
M Joeres et al. Eur J Clin Microbiol Infect Dis 2023 12
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
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Large Community Outbreak of Legionnaires Disease Potentially Associated with a Cooling Tower - Napa County, California, 2022.
Nárjara V Grossmann et al. MMWR Morb Mortal Wkly Rep 2023 12 (49) 1315-1320 -
Genomic analysis of Lineage specific Transmission of multidrug resistance tuberculosis in China.
Yi-Fan Li et al. Emerg Microbes Infect 2023 12 2294858 -
Genomic surveillance reveals dynamic shifts in the connectivity of COVID-19 epidemics.
Nathaniel L Matteson et al. Cell 2023 12 (26) 5690-5704.e20 -
A Bayesian inference method to estimate transmission trees with multiple introductions; applied to SARS-CoV-2 in Dutch mink farms.
Bastiaan R Van der Roest et al. PLoS Comput Biol 2023 11 (11) e1010928 -
Evolution of influenza A viruses in exhibition swine and transmission to humans, 2013-2015.
Christine M Szablewski et al. Zoonoses Public Health 2023 12 -
Travel surveillance uncovers dengue virus dynamics and introductions in the Caribbean.
Emma Taylor-Salmon et al. medRxiv 2023 11 -
Assessing transmission attribution risk from simulated sequencing data in HIV molecular epidemiology.
Fabrícia F Nascimento et al. AIDS 2023 12 -
First Canadian report of transmission of fluconazole-resistant Candida parapsilosis within two hospital networks confirmed by genomic analysis.
Lisa R McTaggart et al. J Clin Microbiol 2023 12 e0116123
ANTIMICROBIALS / VACCINES / INTERVENTIONS
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An antibody-free evaluation of an mRNA COVID-19 vaccine.
Paul J Branham et al. Biologicals 2023 12 101738
HOST-MICROBE INTERACTIONS
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Gut microbiome predictors of Escherichia coli sequence type 131 colonization and loss.
Daniel E Park et al. EBioMedicine 2023 12 104909
Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by Public Health Genomics Branch to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
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- Page last updated:May 2, 2024
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