Advanced Molecular Detection Clips Content (Published on 12/15/2016)
NEWS
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Updated IDSA, CDC guidelines recommend newer tests for TB
Healio, Dec 8, 2016. -
New Test Could Improve Diagnosis of Rare, Fatal Brain Disorder
Rettner R. LiveScience, Dec 12, 2016. -
Finding the worlds unknown viruses before they find us
Branswell H. STAT, Dec 13, 2016. -
Scientists find ancient, cave-dwelling resistant bacteria
Dall C. CIDRAP, Dec 12, 2016. -
Smallpox Evolution, History Explored With Genome Sequence From Ancient Remains
Anderson A. GenomeWeb, Dec 8, 2016. -
Carbapenem Resistance on the Farm
GenomeWeb, Dec 9, 2016. -
Phages Carry Antibiotic Resistance Genes
Olena A. The Scientist, Dec 8, 2016. -
Zika mutations acquired trans-Pacific contributed to changes in pathology; Study
(UNC press release) Outbreak News Today, Dec 14, 2016.
EVENTS / TRAINING / WEB RESOURCES
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Enhancing BioWatch Capabilities Through Technology and Collaboration
(workshop report) National Academies Press, Dec 2016. -
Big Data and Analytics for Infectious Disease Research, Operations, and Policy
(workshop report) National Academies Press, Dec 2016.
POLICY
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NIH Policy on Single-IRB Review A New Era in Multicenter Studies
Ervin AM, et al. New Engl J Med, Dec 15, 2016.
CONCEPTS / COMMENTS
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Overview of CRISPR-Cas9 Biology.
Ratner Hannah K et al. Cold Spring Harbor protocols 2016 Dec (12) pdb.top088849
METHODS / TOOLS
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Single-cell barcoding and sequencing using droplet microfluidics.
Zilionis Rapolas et al. Nature protocols 2017 Jan (1) 44-73 -
Implementation and data analysis of Tn-seq, whole genome resequencing, and single-molecule real time sequencing for bacterial genetics.
Burby Peter E et al. Journal of bacteriology 2016 Sep -
MinION as part of a biomedical rapidly deployable laboratory.
Walter Mathias C et al. Journal of biotechnology 2016 Dec -
VirusDetect: An automated pipeline for efficient virus discovery using deep sequencing of small RNAs.
Zheng Yi et al. Virology 2017 Jan 130-138 -
Stochastic Simulation Service: Bridging the Gap between the Computational Expert and the Biologist.
Drawert Brian et al. PLoS computational biology 2016 Dec (12) e1005220 -
A Graph-Centric Approach for Metagenome-Guided Peptide and Protein Identification in Metaproteomics.
Tang Haixu et al. PLoS computational biology 2016 Dec (12) e1005224 -
High-Throughput Next Generation Sequencing of Polioviruses.
Montmayeur Anna M et al. Journal of clinical microbiology 2016 Dec
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MASTERMIND - Bringing Microbial Diagnostics to the Clinic.
Patel Robin et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2016 Dec
EVOLUTION / ECOLOGY / POPULATIONS
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Use of single molecule sequencing for comparative genomics of an environmental and a clinical isolate of Clostridium difficile ribotype 078.
Hargreaves Katherine R et al. BMC genomics 2016 Dec (1) 1020 -
A dominant lineage of Mycoplasma bovis is associated with an increased number of severe mastitis cases in cattle.
Bürki Sibylle et al. Veterinary microbiology 2016 Nov 63-66 -
Detection and Genomic Characterization of Enterovirus D68 in Respiratory Samples Isolated in the United States in 2016.
Terry Fei Fan Ng et al. Genome Announc 2016 12 (6)
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Molecular characterization and phylogenetic analysis of dengue virus type 1 in Guangdong in 2014.
Wang Pei et al. SpringerPlus 2016 (1) 1942 -
17th Century Variola Virus Reveals the Recent History of Smallpox
Duggan AT, et al. Current Biol, Dec 8, 2016. -
Genetic Diversity of Currently Circulating Rubella Viruses: A Need to Define More Precise Viral Groups.
Rivailler Pierre et al. The Journal of general virology 2016 Dec
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Analysis of complete genomes of the rubella virus genotypes 1E and 2B which circulated in China, 2000-2013.
Zhu Zhen et al. Scientific reports 2016 Dec 39025
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Ascaris phylogeny based on multiple whole mtDNA genomes.
Nejsum Peter et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2016 Dec 4-9 -
The Worldwide Spread of the Tiger Mosquito as Revealed by Mitogenome Haplogroup Diversity.
Battaglia Vincenza et al. Frontiers in genetics 2016 208
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
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A diverse intrinsic antibiotic resistome from a cave bacterium.
Pawlowski Andrew C et al. Nature communications 2016 Dec 13803 -
Evaluation of Machine Learning and Rules-Based Approaches for Predicting Antimicrobial Resistance Profiles in Gram-negative Bacilli from Whole Genome Sequence Data.
Pesesky Mitchell W et al. Frontiers in microbiology 2016 1887 -
Protracted regional dissemination of GIM-1-producing Serratia marcescens in Western Germany.
Wendel Andreas F et al. Antimicrobial agents and chemotherapy 2016 Dec -
ESBL-producing Enterobacteriaceae in France: inventory assessed by a multicentric study.
Robin F et al. Antimicrobial agents and chemotherapy 2016 Dec -
Bacillus cereus-induced food-borne outbreaks in France, 2007 to 2014: epidemiology and genetic characterisation.
Glasset Benjamin et al. Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin 2016 Dec (48) -
Detecting Mutations in the Mycobacterium tuberculosis Pyrazinamidase Gene pncA to Improve Infection Control and Decrease Drug Resistance Rates in Human Immunodeficiency Virus Coinfection.
Dudley Matthew Z et al. The American journal of tropical medicine and hygiene 2016 Dec (6) 1239-1246
DETECTION / DIAGNOSIS
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Emerging Concepts and Technologies for the Discovery of Microorganisms Involved in Human Disease.
Bullman Susan et al. Annual review of pathology 2016 Dec -
Official American Thoracic Society/Infectious Diseases Society of America/Centers for Disease Control and Prevention Clinical Practice Guidelines: Diagnosis of Tuberculosis in Adults and Children.
David M Lewinsohn et al. Clin Infect Dis 2016 12 (2) e1-e33 -
Diagnosing tuberculosis in the 21st century - Dawn of a genomics revolution?
Jeanes Christopher et al. International journal of mycobacteriology 2016 Dec (4) 384-391 -
Rapid, Affordable and Portable Medium-Throughput Molecular Device for Zika Virus.
Chan Kamfai et al. Scientific reports 2016 Dec 38223 -
Zika Virus Testing Considerations: Lessons Learned from the First 80 Real-Time Reverse Transcription-PCR-Positive Cases Diagnosed in New York State.
Kirsten St George et al. J Clin Microbiol 2016 12 (2) 535-544
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Development of a point-of-care diagnostic for influenza detection with antiviral treatment effectiveness indication.
Murdock Richard C et al. Lab on a chip 2016 Dec -
Molecular diagnosis of invasive mycoses of the central nervous system.
McCarthy Matthew William et al. Expert review of molecular diagnostics 2016 Dec -
Isothermal Diagnostic Assays for Monitoring Single Nucleotide Polymorphisms in Necator americanus Associated with Benzimidazole Drug Resistance.
Rashwan Nour et al. PLoS neglected tropical diseases 2016 Dec (12) e0005113
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
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Control of carbapenem-resistant Acinetobacter baumannii outbreak in an intensive care unit of a teaching hospital in Southern Italy.
Bianco Aida et al. BMC infectious diseases 2016 Dec (1) 747 -
Insidious risk of severe Mycobacterium chimaera infection in cardiac surgery patients.
Chand Meera et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2016 Dec -
Ebola virus persistence in breast milk after no reported illness: a likely source of virus transmission from mother to child.
Sissoko Daouda et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2016 Dec
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Norovirus GII.Pe Genotype: Tracking a Foodborne Outbreak on a Cruise Ship Through Molecular Epidemiology, Brazil, 2014.
Morillo Simone Guadagnucci et al. Food and environmental virology 2016 Dec -
Human enterovirus D68 in clinical and sewage samples in Israel.
Weil Merav et al. Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology 2016 Nov 52-55
ANTIMICROBIALS / VACCINES / INTERVENTIONS
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Shedding of porcine circovirus type 1 DNA and rotavirus RNA by infants vaccinated with Rotarix®.
Mijatovic-Rustempasic Slavica et al. Human vaccines & immunotherapeutics 2016 Dec 0
HOST-MICROBE INTERACTIONS
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Stable core virome despite variable microbiome after fecal transfer.
Broecker Felix et al. Gut microbes 2016 Dec 0 -
Emerging pathogenic links between microbiota and the gutlung axis
Budden KF, et al. Nat Rev Microbiol, 2017; 15:55?63. -
Zika Virus RNA Replication and Persistence in Brain and Placental Tissue.
Bhatnagar Julu et al. Emerging infectious diseases 2017 Mar (3)
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The Human Intestinal Microbiome in Health and Disease
Lynch SV, Pedersen O. New Engl J Med, Dec 15, 2016.
indicates that at least one CDC-affiliated author; indicates that the article addresses aspects of implementation or evaluation in clinical or public health practice. Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by Public Health Genomics Branch to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
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