Advanced Molecular Detection Clips Content (Published on 11/09/2023)
NEWS
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HPV vaccines are so effective that new screening policies may be in order, suggests study
Merelli A. STAT, Nov 8, 2023. -
How big is science’s fake-paper problem?
Van Noorden R. Nature, Nov 6, 2023.
CONCEPTS / COMMENTS
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Modernizing Federal Oversight of Laboratory-Developed Tests - Toward Safety, Validity, and Utility.
Udit Singhal et al. N Engl J Med 2023 11 (19) 1735-1737 -
Genomic epidemiology of Acinetobacter baumannii goes global.
Santiago Castillo-Ramírez et al. mBio 2023 11 e0252023 -
Vaccine value profile for norovirus
Armah, G., et al. Vaccine 2023
METHODS / TOOLS
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SHIP: identifying antimicrobial resistance gene transfer between plasmids.
Marco Teixeira et al. Bioinformatics 2023 10 (10) -
PanKmer: k-mer-based and reference-free pangenome analysis.
Anthony J Aylward et al. Bioinformatics 2023 10 (10) -
SCORPIO: a utility for defining and classifying mutation constellations of virus genomes.
Rachel Colquhoun et al. Bioinformatics 2023 9 (10) -
A novel tetra-primer ARMS-PCR approach for the molecular karyotyping of chromosomal inversion 2Ru in the main malaria vectors Anopheles gambiae and Anopheles coluzzii.
Verena Pichler et al. Parasit Vectors 2023 10 (1) 388 -
BurkHostGEN: a study protocol for evaluating variations in the Burkholderia pseudomallei and host genomes associated with melioidosis infection.
Kesorn Angchagun et al. Wellcome Open Res 2023 11 347 -
Simultaneous targeted amplicon deep sequencing and library preparation for a time and cost-effective universal parasite diagnostic sequencing approach.
Mathilde Gondard et al. Parasitol Res 2023 11
EVOLUTION / ECOLOGY / POPULATIONS
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A global view on carbapenem-resistant Acinetobacter baumannii.
Carina Müller et al. mBio 2023 10 e0226023 -
Mutational spectra are associated with bacterial niche.
Christopher Ruis et al. Nat Commun 2023 11 (1) 7091 -
Phylogenomics of Leptospira santarosai, a prevalent pathogenic species in the Americas.
Diana Chinchilla et al. PLoS Negl Trop Dis 2023 11 (11) e0011733 -
Ecological diversity profiles of non-vaccine-targeted HPVs after gender-based community vaccination efforts
Pimenoff VN, et al. Cell Host Microbe, Nov 8, 2023. -
Highly pathogenic avian influenza A(H5N1) virus infection in foxes with PB2-M535I identified as a novel mammalian adaptation, Northern Ireland, July 2023.
Paula Lagan et al. Euro Surveill 2023 10 (42) -
Analysis of avian influenza A (H3N8) viruses in poultry and their zoonotic potential, China, September 2021 to May 2022.
Pengfei Cui et al. Euro Surveill 2023 10 (41) -
Spliceosomal introns in the diplomonad parasite Giardia duodenalis revisited.
Matthew H Seabolt et al. Microb Genom 2023 11 (11) -
Genomic Heterogeneity of Cryptosporidium parvum Isolates From Children in Bangladesh: Implications for Parasite Biology and Human Infection.
Maureen Carey et al. J Infect Dis 2023 10 (9) 1292-1298 -
Population genomic analyses reveal population structure and major hubs of invasive Anopheles stephensi in the Horn of Africa.
Jeanne N Samake et al. Mol Ecol 2023 10 (21) 5695-5708
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
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Identification and Characterization of ten Escherichia coli Strains Encoding Novel Shiga Toxin 2 Subtypes, Stx2n as Well as Stx2j, Stx2m, and Stx2o, in the United States.
Rebecca L Lindsey et al. Microorganisms 2023 10 (10) -
Phylogenomics of Acinetobacter species and analysis of antimicrobial resistance genes.
Antonella Migliaccio et al. Front Microbiol 2023 11 1264030 -
Genomic epidemiology of Streptococcus pneumoniae serotype 16F lineages.
Jolynne Mokaya et al. Microb Genom 2023 11 (11) -
Increased prevalence of pretreatment drug resistance mutations in treatment-naïve people living with HIV-1 in Henan Province, China (2022/23).
Jinjin Liu et al. Infect Genet Evol 2023 10 105520 -
Molecular surveillance of insecticide resistance in Phlebotomus argentipes targeted by indoor residual spraying for visceral leishmaniasis elimination in India.
Emma Reid et al. PLoS Negl Trop Dis 2023 11 (11) e0011734
DETECTION / DIAGNOSIS
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A new multiplexed magnetic capture-Droplet digital PCR tool for monitoring wildlife population health and pathogen surveillance.
Christina M Tschritter et al. Ecol Evol 2023 11 (11) e10655 -
A Prospective Bacterial Whole Genome Sequencing-Based Surveillance Program for Comprehensive Early Detection of Healthcare-Associated Infection Transmission in Pediatric Oncology Patients.
Hana Hakim et al. J Hosp Infect 2023 11 -
Early Detection and Surveillance of the SARS-CoV-2 Variant BA.2.86 - Worldwide, July-October 2023.
Anastasia S Lambrou et al. MMWR Morb Mortal Wkly Rep 2023 10 (43) 1162-1167 -
Notes from the Field: Early Identification of the SARS-CoV-2 Omicron BA.2.86 Variant by the Traveler-Based Genomic Surveillance Program - Dulles International Airport, August 2023.
Stephen M Bart et al. MMWR Morb Mortal Wkly Rep 2023 10 (43) 1168-1169 -
Utility of wastewater genomic surveillance compared to clinical surveillance to track the spread of the SARS-CoV-2 Omicron variant across England.
Franziska S Brunner et al. Water Res 2023 11 120804 -
Implementation of California COVIDNet - a multi-sector collaboration for statewide SARS-CoV-2 genomic surveillance.
Debra A Wadford et al. Front Public Health 2023 11 1249614 -
Longitudinal wastewater surveillance of four key pathogens during an unprecedented large-scale COVID-19 outbreak in China facilitated a novel strategy for addressing public health priorities-A proof of concept study.
Songzhe Fu et al. Water Res 2023 11 120751 -
Current sampling and sequencing biases of Lassa mammarenavirus limit inference from phylogeography and molecular epidemiology in Lassa fever endemic regions.
Liã Bárbara Arruda et al. PLOS Glob Public Health 2023 11 (11) e0002159 -
Development of simple, rapid, and sensitive methods for detection of hepatitis C virus RNA from whole blood using reverse transcription loop-mediated isothermal amplification.
Matthew D Pauly et al. J Clin Microbiol 2023 11 e0077123 -
Sequence optimized diagnostic assay for Ebola virus detection.
Jeffrey W Koehler et al. Sci Rep 2023 11 (1) 18840 -
Metabarcoding of Hepatitis E Virus Genotype 3 and Norovirus GII from Wastewater Samples in England Using Nanopore Sequencing.
Samantha Treagus et al. Food Environ Virol 2023 11 -
Molecular surveillance of chloroquine resistance in Plasmodium vivax isolates from malaria cases in Yunnan Province of China using pvcrt-o gene polymorphisms.
Hongyun Ding et al. Malar J 2023 11 (1) 338
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
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Nosocomial Outbreak of Colistin-Resistant, Carbapenemase-Producing Klebsiella Pneumoniae ST11 in a Medical Intensive Care Unit.
Xi Chen et al. J Glob Antimicrob Resist 2023 11 -
Early Postnatal Infection of Neonates Born to Mothers Infected by SARS-CoV-2 Omicron Variant.
Carlo Pietrasanta et al. Pediatrics 2023 10 (5) -
Transmitted Drug Resistance and HIV Diversity Among Adolescents Newly Diagnosed With HIV in Spain.
Cristina Epalza et al. Pediatr Infect Dis J 2023 11 -
Acute gastroenteritis outbreak associated with multiple and rare norovirus genotypes after storm events in Santa Catarina, Brazil.
Tulio Machado Fumian et al. J Med Virol 2023 11 (11) e29205
ANTIMICROBIALS / VACCINES / INTERVENTIONS
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Phylogenetic identification of influenza virus candidates for seasonal vaccines.
Maryam Hayati et al. Sci Adv 2023 11 (44) eabp9185
HOST-MICROBE INTERACTIONS
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APOBEC3 deaminase editing in mpox virus as evidence for sustained human transmission since at least 2016.
Áine O'Toole et al. Science 2023 11 (6670) 595-600 -
Effect of amoxicillin on the gut microbiome of children with severe acute malnutrition in Madarounfa, Niger: a retrospective metagenomic analysis of a placebo-controlled trial.
Drew J Schwartz et al. Lancet Microbe 2023 10 (11) e931-e942 -
Bacterial SNPs in the human gut microbiome associate with host BMI.
Liron Zahavi et al. Nat Med 2023 11
Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by Public Health Genomics Branch to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
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