Advanced Molecular Detection Clips Content (Published on 10/17/2023)
NEWS
-
Learn from the past to predict viral pandemics
Rochman ND, Koonin EV. Nature, Oct 11, 2023. -
WHO Introduces Pilot Program to Improve Accessibility of Neglected Tropical Disease Diagnostics
360dx, Oct 11, 2023. -
Scientists harness CRISPR to make chickens resistant to avian flu
Schnirring L. CIDRAP, Oct 10, 2023. -
‘Incredible’ asteroid sample ferried to Earth is rich in the building blocks of life
Witze A. Nature, Oct 11, 2023. -
How AlphaFold and other AI tools could help us prepare for the next pandemic
Callaway E. Nature, Oct 11, 2023. -
How ChatGPT and other AI tools could disrupt scientific publishing
Conroy G. Nature, Oct 10, 2023.
EVENTS / TRAINING / WEB RESOURCES
-
Considerations for Returning Individual Genomic Results from Population-Based Surveys: Focus on the National Health and Nutrition Examination Survey
(workshop proceedings) NASEM, Oct 2023.
CONCEPTS / COMMENTS
-
Laboratory Criteria for Exclusion and Readmission of Potentially Infectious Persons in Sensitive Settings in the Age of Culture-Independent Diagnostic Tests: Report of a Multidisciplinary Workgroup.
John Besser et al. J Food Prot 2023 10 (12) 100173 -
Prevention of zoonotic spillover: From relying on response to reducing the risk at source.
et al. PLoS Pathog 2023 10 (10) e1011504 -
The Lancet-PPATS Commission on Prevention of Viral Spillover: reducing the risk of pandemics through primary prevention.
Neil M Vora et al. Lancet 2023 10
METHODS / TOOLS
-
A hybridization target enrichment approach for pathogen genomics.
Balaji Sundararaman et al. mBio 2023 10 (5) e0188923 -
Optimization of high-throughput 16S rRNA gene amplicon sequencing: an assessment of PCR pooling, mastermix use and contamination.
Dinesh Aggarwal et al. Microb Genom 2023 10 (10) -
Applications of VirScan to broad serological profiling of bat reservoirs for emerging zoonoses.
Emily Cornelius Ruhs et al. Front Public Health 2023 10 1212018 -
A comprehensive dataset of animal-associated sarbecoviruses.
Bo Liu et al. Sci Data 2023 10 (1) 681 -
Learning from prepandemic data to forecast viral escape.
Nicole N Thadani et al. Nature 2023 10 -
Cost-effective complete genome sequencing using the MinION platform for identification of recombinant enteroviruses.
Yeh-Sheng Chien et al. Microbiol Spectr 2023 10 e0250723 -
SARS-CoV-2 HaploGraph: visualization of SARS-CoV-2 haplotype spread in Japan.
So Nakagawa et al. Genes Genet Syst 2023 10
EVOLUTION / ECOLOGY / POPULATIONS
-
Probability of outbreaks and cross-border dissemination of the emerging pathogen: a genomic survey of Elizabethkingia meningoseptica.
Shaohua Hu et al. Microbiol Spectr 2023 10 e0160223 -
Detection of Borrelia burgdorferi sensu lato species in host-seeking Ixodes species ticks in the United States.
Lynn M Osikowicz et al. Ticks Tick Borne Dis 2023 10 (1) 102270 -
Toxigenic Vibrio cholerae strains in South-East Queensland, Australian river waterways.
Murari Bhandari et al. Appl Environ Microbiol 2023 10 e0047223 -
SARS-CoV-2 evolution in the Omicron era.
Cornelius Roemer et al. Nat Microbiol 2023 10 -
High number of HPAI H5 Virus Infections and Antibodies in Wild Carnivores in the Netherlands, 2020-2022.
Irina V Chestakova et al. Emerg Microbes Infect 2023 10 2270068 -
Molecular epidemiology and recombination of enterovirus D68 in China.
Yingying Shi et al. Infect Genet Evol 2023 10 105512 -
Coding-complete genome sequences of rotavirus A reference strains EDIM, Ph158, and CC425.
Mary C Casey-Moore et al. Microbiol Resour Announc 2023 10 e0063023 -
Novel insights on the genetic population structure of human-infecting Cyclospora spp. and evidence for rapid subtype selection among isolates from the USA.
David K Jacobson et al. Curr Res Parasitol Vector Borne Dis 2023 10 100145 -
Assembly and phylogeographical analysis of novel Taenia solium mitochondrial genomes suggest stratification within the African-American genotype.
Gabriel Jiménez-Avalos et al. Parasit Vectors 2023 10 (1) 349
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
-
Nationwide molecular epidemiology of carbapenemase-producing Citrobacter spp. in France in 2019 and 2020.
Laura Biez et al. mSphere 2023 10 e0036623 -
Genomic epidemiology analysis of drug-resistant Mycobacterium tuberculosis distributed in Mexico.
Paulina M Mejía-Ponce et al. PLoS One 2023 10 (10) e0292965 -
The impact of global warming on the signature virulence gene, thermolabile hemolysin, of Vibrio parahaemolyticus.
Weishan Zhang et al. Microbiol Spectr 2023 10 e0150223 -
The whole-genome molecular epidemiology of sequential isolates of Acinetobacter baumannii colonizing the rectum of patients in an adult intensive care unit of a tertiary hospital.
Dieter Bulach et al. Microbiol Spectr 2023 10 e0219123 -
Rescue and characterization of the first West African Marburg virus 2021 from Guinea.
Isabel von Creytz et al. Heliyon 2023 10 (9) e19613 -
MalariaSED: a deep learning framework to decipher the regulatory contributions of noncoding variants in malaria parasites.
Chengqi Wang et al. Genome Biol 2023 10 (1) 231
DETECTION / DIAGNOSIS
-
Mixed infections in genotypic drug-resistant Mycobacterium tuberculosis.
Linfeng Wang et al. Sci Rep 2023 10 (1) 17100 -
A core-genome multilocus sequence typing scheme for the detection of genetically related Streptococcus pyogenes clusters.
Myrthe M A Toorop et al. J Clin Microbiol 2023 10 e0055823 -
Exploring programmatic indicators of tuberculosis control that incorporate routine Mycobacterium tuberculosis sequencing in low incidence settings: a comprehensive (2017-2021) patient cohort analysis.
Xiaomei Zhang et al. Lancet Reg Health West Pac 2023 10 100910 -
Evaluation of whole and core genome multilocus sequence typing allele schemes for Salmonella enterica outbreak detection in a national surveillance network, PulseNet USA.
Molly M Leeper et al. Front Microbiol 2023 10 1254777 -
Molecular detection and characterization of SARS-CoV-2 in wastewater in Thailand during 2020-2022.
Kattareeya Kumthip et al. J Infect Public Health 2023 10 (11) 1884-1890 -
Genomic monitoring of SARS-CoV-2 variants using sentinel SARI hospital surveillance.
Sarah Denayer et al. Influenza Other Respir Viruses 2023 10 (10) e13202 -
Tracking SARS-CoV-2 Omicron lineages using real-time reverse transcriptase PCR assays and prospective comparison with genome sequencing.
Nathan Zelyas et al. Sci Rep 2023 10 (1) 17478 -
SARS-CoV-2 genomic surveillance in wastewater as a model for monitoring evolution of endemic viruses.
Mukhlid Yousif et al. Nat Commun 2023 10 (1) 6325 -
Neglected SARS-CoV-2 variants and potential concerns for molecular diagnostics: a framework for nucleic acid amplification test target site quality assurance.
Gregory R McCracken et al. Microbiol Spectr 2023 10 e0076123 -
Integration of SARS-CoV-2 testing and genomic sequencing into influenza sentinel surveillance in Uganda, January to December 2022.
John T Kayiwa et al. Microbiol Spectr 2023 10 e0132823 -
Development of a novel serological assay for the detection of mpox infection in vaccinated populations.
Jennifer L Yates et al. J Med Virol 2023 10 (10) e29134 -
Comparison of two novel one-tube nested real-time qPCR assays to detect human-infecting Cyclospora spp.
Travis Richins et al. Microbiol Spectr 2023 10 e0138823
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
-
The advantage of intergenic regions as genomic features for machine-learning-based host attribution of Salmonella Typhimurium from the USA.
Antonia Chalka et al. Microb Genom 2023 10 (10) -
HIV-1 drug resistance and genetic transmission network among newly diagnosed people living with HIV/AIDS in Ningbo, China between 2018 and 2021.
Hang Hong et al. Virol J 2023 10 (1) 233 -
Transmitted drug resistance and subtype patterns of viruses from reported new HIV diagnoses in Germany, 2017-2020.
Uwe Fiebig et al. BMC Infect Dis 2023 10 (1) 673 -
Long-range air dispersion of Candida auris in a Cardiothoracic unit outbreak in Hong Kong.
Tiffany Didik et al. J Hosp Infect 2023 10
ANTIMICROBIALS / VACCINES / INTERVENTIONS
-
Immunoinformatic approach for rational identification of immunogenic peptides against host entry and/or exit monkeypox proteins and potential multi-epitope vaccine construction.
Leonardo Pereira de Araújo et al. J Infect Dis 2023 10 -
Effectiveness of a Messenger RNA Vaccine Booster Dose Against Coronavirus Disease 2019 Among US Healthcare Personnel, October 2021-July 2022.
Ian D Plumb et al. Open Forum Infect Dis 2023 10 (10) ofad457
HOST-MICROBE INTERACTIONS
-
Bacterial Modification of the Association Between Arsenic and Autism-Related Social Behavior Scores.
Hannah E Laue et al. Expo Health 2023 10 (2) 347-354 -
Mapping SARS-CoV-2 antigenic relationships and serological responses.
Samuel H Wilks et al. Science 2023 10 (6666) eadj0070 -
Circulating Tumor HPV DNA for Surveillance of HPV-Positive Oropharyngeal Squamous Cell Carcinoma: A Narrative Review.
Krystle A Lang Kuhs et al. JAMA Oncol 2023 10 -
Fungal diversity in homes and asthma morbidity among school-age children in New York City.
Samuel J Cochran et al. Environ Res 2023 10 (Pt 1) 117296
Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by Public Health Genomics Branch to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
- Page last reviewed:Feb 1, 2024
- Page last updated:Jan 16, 2025