Advanced Molecular Detection Clips Content (Published on 10/15/2015)
EVENTS / TRAINING / WEB RESOURCES
CONCEPTS / COMMENTS
We Asked 92 Bioinformaticians What Frustrated Them About Their Work: You Won't Believe What They Said!
Loman N. via Twitter, Oct 6, 2015.
Williams SCP. The Scientist, Oct 1, 2015.
Rates of Lateral Gene Transfer in Prokaryotes: High but Why?
Vos Michiel et al. Trends in microbiology 2015 Oct (10) 598-605
Microbial Malaise: How Can We Classify the Microbiome?
Beiko Robert G et al. Trends in microbiology 2015 Oct
The tantalizing links between gut microbes and the brain.
Smith Peter Andrey et al. Nature 2015 Oct (7573) 312-4
METHODS / TOOLS
Detecting Horizontal Gene Transfer between Closely Related Taxa.
Adato Orit et al. PLoS computational biology 2015 Oct (10) e1004408
Challenges of the Unknown: Clinical Application of Microbial Metagenomics.
Rose Graham et al. International journal of genomics 2015 292950
SPINGO: a rapid species-classifier for microbial amplicon sequences.
Allard Guy et al. BMC bioinformatics 2015 (1) 324
Oxford Nanopore sequencing, hybrid error correction, and de novo assembly of a eukaryotic genome.
Goodwin Sara et al. Genome research 2015 Oct
Development of ListeriaBase and comparative analysis of Listeria monocytogenes.
Tan Mui Fern et al. BMC genomics 2015 (1) 755
EVOLUTION / ECOLOGY / POPULATIONS
Tracing the Spread of Clostridium difficile Ribotype 027 in Germany Based on Bacterial Genome Sequences.
Steglich Matthias et al. PloS one 2015 (10) e0139811
The Dynamics of Genetic Interactions Between Vibrio metoecus and Vibrio cholerae, Two Close Relatives Co-Occurring in the Environment.
Orata Fabini D et al. Genome biology and evolution 2015 Oct
Genotyping of Mycobacterium leprae strains from a region of high endemic leprosy prevalence in India.
Lavania Mallika et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2015 Oct 256-261
Genomic characterization of emergent pseudorabies virus in China reveals marked sequence divergence: Evidence for the existence of two major genotypes.
Ye Chao et al. Virology 2015 Sep 32-43
Evolutionary and Ecological Characterization of Mayaro Virus Strains Isolated during an Outbreak, Venezuela, 2010.
Auguste Albert J et al. Emerging infectious diseases 2015 Oct (10) 1742-50
Re-emergence of dengue virus type 3 in Canton, China, 2009-2010, associated with multiple introductions through different geographical routes.
Liang Huiying et al. PloS one 2013 (2) e55353
Genotypic anomaly in Ebola virus strains circulating in Magazine Wharf area, Freetown, Sierra Leone, 2015.
Smits Saskia L et al. Euro surveillance : bulletin Europe´en sur les maladies transmissibles = European communicable disease bulletin 2015 Oct (40)
Molecular epidemiology of Giardia and Cryptosporidium infections.
Thompson R C A et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2015 Oct
Ape parasite origins of human malaria virulence genes.
Larremore Daniel B et al. Nature communications 2015 8368
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
Trading Capsule for Increased Cytotoxin Production: Contribution to Virulence of a Newly Emerged Clade of emm89 Streptococcus pyogenes.
Zhu Luchang et al. mBio 2015 (5)
Genomic Plasticity of Multidrug-resistant NDM-1 Positive Clinical Isolate of Providencia rettgeri.
Olaitan Abiola Olumuyiwa et al. Genome biology and evolution 2015 Oct
Identification of intrinsically metronidazole-resistant clades of Gardnerella vaginalis.
Schuyler Jessica A et al. Diagnostic microbiology and infectious disease 2015 Oct
Adherence and invasive properties of Corynebacterium diphtheriae strains correlates with the predicted membrane-associated and secreted proteome.
Sangal Vartul et al. BMC genomics 2015 (1) 765
Capsular profiling of the Cronobacter genus and the association of specific Cronobacter sakazakii and C. malonaticus capsule types with neonatal meningitis and necrotizing enterocolitis.
Ogrodzki P et al. BMC genomics 2015 (1) 758
Antimicrobial susceptibility, virulence gene profiles and molecular subtypes of Salmonella Newport isolated from humans and other sources.
Kuang Dai et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2015 Oct
Coevolutionary landscape inference and the context-dependence of mutations in beta-lactamase TEM-1.
Figliuzzi M et al. Molecular biology and evolution 2015 Oct
The Dynamic Genome and Transcriptome of the Human Fungal Pathogen Blastomyces and Close Relative Emmonsia.
Muñoz José F et al. PLoS genetics 2015 Oct (10) e1005493
DETECTION / DIAGNOSIS
Comparative analysis of subtyping methods against a whole-genome-sequencing standard for Salmonella enterica serotype Enteritidis.
Deng Xiangyu et al. Journal of clinical microbiology 2015 Jan (1) 212-8
Human bocavirus infection as a cause of severe acute respiratory tract infection in children.
Moesker F M et al. Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases 2015 Oct (10) 964.e1-8
Genetic Analysis and Species Specific Amplification of the Artemisinin Resistance-Associated Kelch Propeller Domain in P. falciparum and P. vivax.
Talundzic Eldin et al. PloS one 2015 (8) e0136099
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
Genomic signature of multidrug-resistant Salmonella enterica serovar typhi isolates related to a massive outbreak in Zambia between 2010 and 2012.
Hendriksen Rene S et al. Journal of clinical microbiology 2015 Jan (1) 262-72
Hospital-wide Eradication of a Nosocomial Legionella pneumophila Serogroup 1 Outbreak.
Bartley Paul B et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2015 Oct
Molecular Evidence of Sexual Transmission of Ebola Virus.
Mate Suzanne E et al. The New England journal of medicine 2015 Oct
Chronobiomics: The Biological Clock as a New Principle in Host-Microbial Interactions.
Thaiss Christoph A et al. PLoS pathogens 2015 Oct (10) e1005113
Prediction of Early Childhood Caries via Spatial-Temporal Variations of Oral Microbiota.
Teng Fei et al. Cell host & microbe 2015 Sep (3) 296-306
Toll-like receptor 8 (TLR8) polymorphisms are associated with non-progression of chronic hepatitis C in HIV/HCV coinfected patients.
Fernández-Rodríguez Amanda et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2015 Oct
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