Advanced Molecular Detection Clips Content (Published on 10/05/2023)
NEWS
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Lab Tests That Escape FDA Oversight May Come Under Agency Review
George J. MedPage Today, Sep 29, 2023. -
How to spice up your bioinformatics skill set with AI
Pells R. Nature, Oct 4, 2023. -
mRNA COVID vaccines saved lives and won a Nobel — what’s next for the technology?
Dolgin E, Ledford H. Nature, Oct 3, 2023. -
2023 Nobel Prize in Medicine: Karikó, Weissman awarded prize for mRNA research
Joseph A. STAT, Oct 2, 2023. -
First global survey reveals who is doing ‘gain of function’ research on pathogens and why
Kozlov M. Nature, Sep 15, 2023. -
Global polio eradication effort struggles with the end game
Cohen J. Science, Sep 18, 2023. -
Source unknown in India's latest Nipah virus outbreak
Schnirring L. CIDRAP, Oct 3, 2023. -
Antimicrobial Resistance in Perspective: Using New Technology to Help Identify Resistant Fungal Pathogens
Markantonis JE. IDSE, Sep 15, 2023. -
New River Blindness Test May Enable Easier Field Diagnosis
Johnson M. GenomeWeb, Sept 29, 2023.
EVENTS / TRAINING / WEB RESOURCES
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Evaluating a large language model's ability to solve programming exercises from an introductory bioinformatics course.
Stephen R Piccolo et al. PLoS Comput Biol 2023 9 (9) e1011511
CONCEPTS / COMMENTS
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New Challenges, Evolved Approach: The Public Health Response Readiness Framework.
Kate C Noelte et al. Health Secur 2023 9 (S1) S89-S94
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Feeling the Heat: Researchers struggle to convey the complex impacts of climate warming on infectious disease
Kupferschmidt K. Science, Sep 26, 2023. -
Boosting pathogen genomics and bioinformatics workforce in Africa.
Harris Onywera et al. Lancet Infect Dis 2023 10 -
Understanding antimicrobial resistance to manage cholera.
Agila Kumari Pragasam et al. Nat Microbiol 2023 9 (10) 1754-1755 -
The Mycobacterium tuberculosis genome at 25 years: lessons and lingering questions.
Benjamin N Koleske et al. J Clin Invest 2023 10 (19) -
Recommendations on data sharing in HIV drug resistance research.
Seth C Inzaule et al. PLoS Med 2023 9 (9) e1004293 -
Toward Consent in Molecular HIV Surveillance?: Perspectives of Critical Stakeholders.
Stephen Molldrem et al. AJOB Empir Bioeth 2023 9 1-14 -
Microbiome ownership for Indigenous peoples.
Matilda Handsley-Davis et al. Nat Microbiol 2023 9 (10) 1777-1786
METHODS / TOOLS
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An improved framework for detecting discrete epidemiologically meaningful partitions in hierarchically clustered genetic data.
David K Jacobson et al. Bioinform Adv 2023 9 (1) vbad118
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Assessment of seasonality and normalization techniques for wastewater-based surveillance in Ontario, Canada.
Hadi A Dhiyebi et al. Front Public Health 2023 9 1186525 -
GenArk: towards a million UCSC genome browsers
Clawson H, et al. Genome Biol, Oct 2, 2023. -
Towards interoperability in infection control: a standard data model for microbiology.
Eugenia Rinaldi et al. Sci Data 2023 9 (1) 654 -
Ten quick tips for building FAIR workflows.
Casper de Visser et al. PLoS Comput Biol 2023 9 (9) e1011369 -
mStrain: strain-level identification of Yersinia pestis using metagenomic data.
Xiuwei Qian et al. Bioinform Adv 2023 9 (1) vbad115 -
Harmonization of supervised machine learning practices for efficient source attribution of Listeria monocytogenes based on genomic data.
Pierluigi Castelli et al. BMC Genomics 2023 9 (1) 560 -
At the crossroads of epidemiology and biology: Bridging the gap between SARS-CoV-2 viral strain properties and epidemic wave characteristics.
Florian Poydenot et al. Biochimie 2023 3 54-65 -
Development of reverse genetic tools to study Chapare and Machupo viruses.
Shilpi Jain et al. Virology 2023 9 109888
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A fast and accurate method for SARS-CoV-2 genomic tracing.
Wentai Ma et al. Brief Bioinform 2023 10 (6) -
Navigating the Landscape: A Comprehensive Review of Current Virus Databases.
Muriel Ritsch et al. Viruses 2023 9 (9)
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A genomic platform for surveillance and antigen discovery in Plasmodium spp. using long-read amplicon sequencing.
David Fernando Plaza et al. Cell Rep Methods 2023 9 (9) 100574
EVOLUTION / ECOLOGY / POPULATIONS
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Genomic and phenotypic characterization of Salmonella enterica serovar Kentucky.
Amber K Richards et al. Microb Genom 2023 9 (9) -
Draft genome sequences of a historical collection of Listeria monocytogenes from humans and other sources, 1926-1964.
Phillip Brown et al. Microbiol Resour Announc 2023 9 e0062523
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Comparative sequence analysis elucidates the evolutionary patterns of Yersinia pestis in New Mexico over thirty-two years.
Mary E Warren et al. PeerJ 2023 10 e16007 -
Epidemiological and genomic investigation of chikungunya virus in Rio de Janeiro state, Brazil, between 2015 and 2018.
Filipe Romero Rebello Moreira et al. PLoS Negl Trop Dis 2023 9 (9) e0011536 -
A Phylogeographic Description of Histoplasma capsulatum in the United States.
Ujwal R Bagal et al. J Fungi (Basel) 2023 9 (9)
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Pangolin Genomes Offer Key Insights and Resources for the World's Most Trafficked Wild Mammals.
Sean P Heighton et al. Mol Biol Evol 2023 10 (10)
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
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The origin and evolution of IncF33 plasmids based on large-scale data sets.
Guolong Gao et al. mSystems 2023 9 e0050823 -
Genomic surveillance for antimicrobial resistance - a One Health perspective.
Steven P Djordjevic et al. Nat Rev Genet 2023 9 -
Increasing Prevalence of Artemisinin-Resistant HRP2-Negative Malaria in Eritrea.
Selam Mihreteab et al. N Engl J Med 2023 9 (13) 1191-1202 -
Acquisition of Type I methyltransferase via horizontal gene transfer increases the drug resistance of Aeromonas veronii.
Jiayue Ma et al. Microb Genom 2023 9 (9) -
Genomic epidemiology reveals multidrug resistant plasmid spread between Vibrio cholerae lineages in Yemen.
Florent Lassalle et al. Nat Microbiol 2023 9 (10) 1787-1798 -
Whole genome sequencing of increased number of azithromycin-resistant Shigella flexneri 1b isolates in Ontario.
Alefiya Neemuchwala et al. Sci Rep 2023 10 (1) 16582 -
Genomic analysis of almost 8,000 Salmonella genomes reveals drivers and landscape of antimicrobial resistance in China.
Yanan Wang et al. Microbiol Spectr 2023 10 e0208023 -
The scope of antimicrobial resistance in residential aged care facilities determined through analysis of Escherichia coli and the total wastewater resistome.
Sylvia A Sapula et al. Microbiol Spectr 2023 10 e0073123 -
Phenotypic and genotypic antimicrobial resistance correlation and plasmid characterization in Salmonella spp. isolates from Italy reveal high heterogeneity among serovars.
Sara Petrin et al. Front Public Health 2023 9 1221351 -
Borderline rpoB mutations transmit at the same rate as common rpoB mutations in a tuberculosis cohort in Bangladesh.
Pauline Lempens et al. Microb Genom 2023 9 (9) -
Use of whole genome sequencing to identify low-frequency mutations in SARS-CoV-2 patients treated with remdesivir.
Kuganya Nirmalarajah et al. Influenza Other Respir Viruses 2023 9 (9) e13179 -
A molnupiravir-associated mutational signature in global SARS-CoV-2 genomes.
Theo Sanderson et al. Nature 2023 9 -
Whole-genome surveillance identifies markers of Plasmodium falciparum drug resistance and novel genomic regions under selection in Mozambique.
Erin Coonahan et al. mBio 2023 9 e0176823
DETECTION / DIAGNOSIS
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Fourier-transform infrared spectroscopy for typing of vancomycin-resistant Enterococcus faecium: performance analysis and outbreak investigation.
T C Scheier et al. Microbiol Spectr 2023 9 e0098423 -
Rapid diagnostic testing for syphilis in Arctic communities (the STAR study): a multisite prospective field diagnostic accuracy study in an intended-use setting.
Chelsea Caya et al. Clin Microbiol Infect 2023 6 (10) 1335.e1-1335.e7 -
Classification and prediction of Klebsiella pneumoniae strains with different MLST allelic profiles via SERS spectral analysis.
Li-Yan Zhang et al. PeerJ 2023 10 e16161 -
Evaluation of Fourier transform-infrared spectroscopy (FT-IR) as a control measure for nosocomial outbreak investigations.
Gabriela Uribe et al. J Clin Microbiol 2023 10 e0034723 -
Genomic Surveillance Reveals the Rapid Expansion of the XBB Lineage among Circulating SARS-CoV-2 Omicron Lineages in Southeastern Wisconsin, USA.
Arunachalam Ramaiah et al. Viruses 2023 9 (9)
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Multiplexed discrimination of SARS-CoV-2 variants via plasmonic-enhanced fluorescence in a portable and automated device.
Ying Liu et al. Nat Biomed Eng 2023 9 -
Insights into SARS-CoV-2 in Angola during the COVID-19 peak: Molecular epidemiology and genome surveillance.
Ngiambudulu M Francisco et al. Influenza Other Respir Viruses 2023 9 (9) e13198
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Alternative molecular and genomic strategies to provide a rapid response to alerts concerning the introduction of new emerging SARS-CoV-2 variants: the Omicron alert.
Marta Herranz et al. Microbiol Spectr 2023 9 e0107523
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Development and application of influenza virus wastewater surveillance in Hong Kong.
Xiawan Zheng et al. Water Res 2023 9 120594
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Development and validation of three automated high-throughput molecular tests to detect MPX virus infections.
Mark Anderson et al. J Infect Dis 2023 9 -
Broad-Spectrum Detection of HPV in Male Genital Samples Using Target-Enriched Whole-Genome Sequencing.
Tengguo Li et al. Viruses 2023 9 (9)
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DENV-1 genotype V linked to the 2022 dengue epidemic in Southern Brazil.
Juliana Schons Gularte et al. J Clin Virol 2023 9 105599
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Highly sensitive and rapid point-of-care testing for HIV-1 infection based on CRISPR-Cas13a system.
Xiaohui Li et al. BMC Infect Dis 2023 9 (1) 627 -
Incidence and molecular epidemiology of hepatitis C virus reinfection in prisons in Catalonia, Spain (Re-HCV study).
Verónica Saludes et al. Sci Rep 2023 9 (1) 16012
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Improved performance of nucleic acid-based assays for genetically diverse norovirus surveillance.
Chamteut Oh et al. Appl Environ Microbiol 2023 10 (10) e0033123 -
Next-generation fungal identification using target enrichment and Nanopore sequencing.
Pei-Ling Yu et al. BMC Genomics 2023 10 (1) 581 -
Impact of cell-free DNA fungal polymerase chain reaction panels on healthcare-associated infection mould investigations.
Ayelet Rosenthal et al. J Infect Prev 2023 9 (5) 223-227
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Evidence of Submicroscopic Plasmodium knowlesi Mono-Infection in Remote Indigenous Communities in Kelantan, Peninsular Malaysia.
Nor Diyana Dian et al. Am J Trop Med Hyg 2023 9
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Molecular screening of Entamoeba spp. (E. histolytica, E. dispar, E. coli, and E. hartmanni) and Giardia intestinalis using PCR and sequencing.
M Tokoro et al. MethodsX 2023 9 102361
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
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Monocentric observational cohort study to investigate the transmission of third-generation cephalosporin-resistant Enterobacterales in a neonatal intensive care unit in Heidelberg, Germany.
Dennis Nurjadi et al. Microbiol Spectr 2023 9 e0203823 -
Genomic epidemiological investigation of an outbreak of Serratia marcescens neurosurgical site infections associated with contaminated haircutting toolkits in a hospital barbershop.
Xiong Liu et al. J Hosp Infect 2023 9
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Multistate outbreak of turtle-associated salmonellosis highlights ongoing challenges with the illegal sale and distribution of small turtles.
Kaylea Nemechek et al. Zoonoses Public Health 2023 9 (8) 684-691
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Unique SARS-CoV-2 Variants, Tourism Metrics, and B.1.2 Emergence in Early COVID-19 Pandemic: A Correlation Analysis in South Dakota.
Ahmed Nahian et al. Int J Environ Res Public Health 2023 9 (18) -
Epidemiological and molecular evidence of intrafamilial transmission through sexual and vertical routes in Bahia, the state with the highest prevalence of HTLV-1 in Brazil.
Aidê Nunes da Silva et al. PLoS Negl Trop Dis 2023 9 (9) e0011005 -
Molecular characterization of the 2022 Sudan virus disease outbreak in Uganda.
Stephen Balinandi et al. J Virol 2023 9 e0059023
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Rapid emergence and transmission of virulence-associated mutations in the oral poliovirus vaccine following vaccination campaigns.
Katharine S Walter et al. NPJ Vaccines 2023 9 (1) 137 -
Candida auris Clinical Isolates Associated with Outbreak in Neonatal Unit of Tertiary Academic Hospital, South Africa.
Dikeledi Kekana et al. Emerg Infect Dis 2023 9 (10) 2044-2053
ANTIMICROBIALS / VACCINES / INTERVENTIONS
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A computationally designed antigen eliciting broad humoral responses against SARS-CoV-2 and related sarbecoviruses
Vishwanath S, et al. Nat Biomed Eng, Sep 25, 2023.
HOST-MICROBE INTERACTIONS
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Genetic association of beta-lactams-induced hypersensitivity reactions: A systematic review of genome-wide evidence and meta-analysis of candidate genes.
Lalita Lumkul et al. World Allergy Organ J 2023 10 (9) 100816 -
Determinants of de novo B cell responses to drifted epitopes in post-vaccination SARS-CoV-2 infections.
Grace E Quirk et al. medRxiv 2023 9 -
Host genetic variation at a locus near CHD1L impacts HIV sequence diversity in a South African population.
Vanessa E Schulz et al. J Virol 2023 9 e0095423 -
Proteomic and genetic analyses of influenza A viruses identify pan-viral host targets.
Kelsey M Haas et al. Nat Commun 2023 9 (1) 6030
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Meta-analysis reveals the vaginal microbiome is a better predictor of earlier than later preterm birth.
Caizhi Huang et al. BMC Biol 2023 9 (1) 199
indicates that at least one CDC-affiliated author; indicates that the article addresses aspects of implementation or evaluation in clinical or public health practice. Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by Public Health Genomics Branch to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
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- Page last updated:Jan 23, 2025