Advanced Molecular Detection Clips Content (Published on 10/04/2018)
NEWS
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3 scientists sped up evolution in a lab. Their work just won a Nobel Prize.
Irfan U. Vox, Oct 3, 2018. -
Wellcome Sanger Institute at 25: how the genomic revolution is changing medicine
Wellcome Sanger Institute, Sep 19, 2018. -
Smartphone-based test shows promise for rapid UTI diagnosis
Dall C. CIDRAP, Sep 28, 2018. -
UCSD Team Develops Software to Streamline Metaproteomic Database Searching
Bonislawski A. GenomeWeb, Sep 27, 2018. -
TB Sequencing Has Potential to Replace Phenotypic Drug Susceptibility Testing
Heger M. GenomeWeb, Sep 27, 2018. -
The DNA data storage machine thats the size of a school bus
Regalado A. Tech Rev, Oct 2, 2018. -
Health officials 'very worried' as African swine fever spreads in Europe and Asia
Avramova N. CNN, Oct 2, 2018. -
Hospital's Fungal Outbreak Blamed on Reusable Thermometers
Boyles S. MedPage Today, Oct 3, 2018. -
Bringing order to the wild frontier of microbiome medicine
Olle B. STAT, Oct 2, 2018.
EVENTS / TRAINING / WEB RESOURCES
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Chromebook Data Science - a free online data science program for anyone with a web browser.
(blog post, links to online training) Leek J. simplystats, Oct 1, 2018.
CONCEPTS / COMMENTS
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New Tools in the Ebola Arsenal.
Damon Inger K et al. The New England journal of medicine 2018 Oct -
Haves and have nots must find a better way: The case for open scientific hardware
Chagas AM. PLoS Biol, Sep 27, 2018. -
Environmental microbiology: Perspectives for legal and occupational medicine.
Giampaoli Saverio et al. Legal medicine (Tokyo, Japan) 2018 Sep 34-43 -
Unveiling the RNA World.
Lieberman Judy et al. The New England journal of medicine 2018 09 (13) 1278-1280
METHODS / TOOLS
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Automated Real-Time Collection of Pathogen-Specific Diagnostic Data: Syndromic Infectious Disease Epidemiology.
Meyers Lindsay et al. JMIR public health and surveillance 2018 Jul (3) e59 -
An Update on the Novel Genera and Species and Revised Taxonomic Status of Bacterial Organisms Described in 2016 and 2017.
Munson Erik et al. Journal of clinical microbiology 2018 Sep -
PlaScope: a targeted approach to assess the plasmidome from genome assemblies at the species level.
Royer G et al. Microbial genomics 2018 Sep (9) -
ProteoStorm: An Ultrafast Metaproteomics Database Search Framework.
Beyter Doruk et al. Cell systems 2018 Sep -
Considerations for Optimization of High-Throughput Sequencing Bioinformatics Pipelines for Virus Detection.
Lambert Christophe et al. Viruses 2018 Sep (10) -
Great differences in performance and outcome of high-throughput sequencing data analysis platforms for fungal metabarcoding.
Anslan Sten et al. MycoKeys 2018 (39) 29-40 -
PCR-based quantification of taxa-specific abundances in microbial communities: Quantifying and avoiding common pitfalls.
Bonk Fabian et al. Journal of microbiological methods 2018 Sep
EVOLUTION / ECOLOGY / POPULATIONS
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Genetic diversity, infection prevalence, and possible transmission routes of Bartonella spp. in vampire bats.
Becker Daniel J et al. PLoS neglected tropical diseases 2018 Sep (9) e0006786 -
Effect of vaccination on pneumococci isolated from the nasopharynx of healthy children and the middle ear of children with otitis media in Iceland.
Quirk Sigríður J et al. Journal of clinical microbiology 2018 Sep -
Whole genome analysis of local Kenyan and global sequences unravels the epidemiological and molecular evolutionary dynamics of RSV genotype ON1 strains.
Otieno J R et al. Virus evolution 2018 Jul (2) vey027 -
Characterization of a Novel HIV-1 Circulating Recombinant Form (CRF80_0107) among Men Who Have Sex with Men in China.
Zhang Yu et al. AIDS research and human retroviruses 2018 Sep -
Insights From Deep Sequencing of the HBV Genome-Unique, Tiny, and Misunderstood.
McNaughton Anna L et al. Gastroenterology 2018 Sep -
Molecular Evolution, Diversity, and Adaptation of Influenza A(H7N9) Viruses in China.
Lu Jing et al. Emerging infectious diseases 2018 Oct (10) 1795-1805 -
Emerging Insights into the Occupational Mycobiome.
Green Brett J et al. Current allergy and asthma reports 2018 Sep (11) 62
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
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Klebsiella grimontii , a New Species Acquired Carbapenem Resistance.
Liu Lu et al. Frontiers in microbiology 2018 2170 -
A genomic view of experimental intraspecies and interspecies transformation of a rifampicin-resistance allele into Neisseria meningitidis.
Alfsnes Kristian et al. Microbial genomics 2018 Sep -
Comparative transcriptome analyses of magainin I-susceptible and -resistant Escherichia coli strains.
Cardoso Marlon H et al. Microbiology (Reading, England) 2018 Oct -
Emergence and dissemination of colistin-resistant Klebsiella pneumoniae isolates expressing OXA-48 plus CTX-M-15 in patients not previously treated with colistin in a Spanish university hospital.
Barragán-Prada Hugo et al. Diagnostic microbiology and infectious disease 2018 Sep -
HIV Latency Affected by Host Cell Transcriptomes
GenomeWeb, Oct 2, 2018. -
Recent advances in the genomic and molecular biology of Giardia.
Ortega-Pierres M Guadalupe et al. Acta tropica 2018 Aug 67-72 -
Have compensatory mutations facilitated the current epidemic of multidrug-resistant tuberculosis?
Liu Qingyun et al. Emerging microbes & infections 2018 Jun (1) 98 -
The Role of Antibiotic-Target-Modifying and Antibiotic-Modifying Enzymes in Mycobacterium abscessus Drug Resistance.
Luthra Sakshi et al. Frontiers in microbiology 2018 2179 -
Absence of Plasmodium falciparum K13 Propeller Domain Polymorphisms among Field Isolates Collected from the Brazilian Amazon Basin between 1984 and 2011.
Inoue Juliana et al. The American journal of tropical medicine and hygiene 2018 Oct
DETECTION / DIAGNOSIS
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Clinical impact of rapid molecular detection of respiratory pathogens in patients with acute respiratory infection.
Echavarría M et al. Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology 2018 Sep 90-95 -
Identification and Diversity of Actinomyces species in a Clinical Microbiology Laboratory in the MALDI-TOF MS era.
Fong Peivern et al. Anaerobe 2018 Sep -
Microarray-Based Detection and Clinical Evaluation for Helicobacter pylori Resistance to Clarithromycin or Levofloxacin and the Genotype of CYP2C19 in 1083 Patients.
Song Yi et al. BioMed research international 2018 2684836 -
Diagnosis of Haemophilus influenzae Pneumonia by Nanopore 16S Amplicon Sequencing of Sputum.
Moon Jangsup et al. Emerging infectious diseases 2018 Oct (10) 1944-1946 -
Real-time analysis of nanopore-based metagenomic sequencing from infected orthopaedic devices.
Sanderson Nicholas D et al. BMC genomics 2018 Sep (1) 714 -
Sensitive and specific assay for the simultaneous detection of Mycoplasma genitalium and macrolide resistance-associated mutations.
Braam Joyce F et al. European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology 2018 Oct -
An Innovative Multiplexed And Flexible Molecular Approach For The Differential Detection Of Arboviruses.
Leon Fanny et al. The Journal of molecular diagnostics : JMD 2018 Sep -
Recombinant identification, molecular classification and proposed reference genomes for hepatitis delta virus.
Miao Zhijiang et al. Journal of viral hepatitis 2018 Sep -
Reassessment of High Prevalence Human Adenovirus Detections Among Residents of Two Refugee Centers in Kenya Under Surveillance for Acute Respiratory Infections.
Wu Xinwei et al. Journal of medical virology 2018 Sep -
Reverse Transcription-Loop-mediated Isothermal Amplification (RT-LAMP) Assay for Zika Virus and Housekeeping Genes in Urine, Serum, and Mosquito Samples.
Bartolone Sarah N et al. Journal of visualized experiments : JoVE 2018 Sep (139) -
Simple, rapid and sensitive portable molecular diagnosis of SFTS virus using Reverse Transcriptional Loop-Mediated Isothermal Amplification (RT-LAMP).
Baek Yun Hee et al. Journal of microbiology and biotechnology 2018 Sep -
Direct RNA Sequencing of the Coding Complete Influenza A Virus Genome.
Keller Matthew W et al. Scientific reports 2018 Sep (1) 14408 -
DNA Diagnostics for Schistosomiasis Control.
Weerakoon Kosala G et al. Tropical medicine and infectious disease 2018 Aug (3)
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
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Petting zoos as sources of Shiga toxin-producing Escherichia coli (STEC) infections.
Schlager Sabine et al. International journal of medical microbiology : IJMM 2018 Oct (7) 927-932 -
Outbreak of Salmonella Chailey Infections Linked To Precut Coconut Pieces - United States and Canada, 2017.
Luna Sarah et al. MMWR. Morbidity and mortality weekly report 2018 Oct (39) 1098-1100 -
Acute Encephalitis with Atypical Presentation of Rubella in Family Cluster, India.
Bharadwaj Sumit D et al. Emerging infectious diseases 2018 Oct (10) 1923-1925 -
A Candida auris Outbreak and Its Control in an Intensive Care Setting.
Eyre David W et al. The New England journal of medicine 2018 Oct (14) 1322-1331
ANTIMICROBIALS / VACCINES / INTERVENTIONS
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Results From a Randomized, Placebo-Controlled Clinical Trial of a RBX2660-A Microbiota-Based Drug for the Prevention of Recurrent Clostridium difficile Infection.
Dubberke Erik R et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2018 Sep (8) 1198-1204 -
Frequent Genetic Mismatch between Vaccine Strains and Circulating Seasonal Influenza Viruses, Hong Kong, China, 1996-2012.
Chan Martin C W et al. Emerging infectious diseases 2018 Oct (10) 1825-1834
HOST-MICROBE INTERACTIONS
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Unexpected Relevant Role of Gene Mosaicism in Primary Immunodeficiency Diseases.
Mensa-Vilaró Anna et al. The Journal of allergy and clinical immunology 2018 Sep -
T cell dynamics and response of the microbiota after gene therapy to treat X-linked severe combined immunodeficiency.
Clarke Erik L et al. Genome medicine 2018 Sep (1) 70
Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by Public Health Genomics Branch to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
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