Advanced Molecular Detection Clips Content (Published on 09/21/2023)
NEWS
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Lack of Standardization Across MDx Infectious Disease Tests Could Undermine Pandemic Preparedness
Bonislawski A. GenomeWeb, Sep 13, 2023. -
Gates Foundation Awards Multiple Grants for Omics, Dx Projects in August
GenomeWeb, Aug 31, 2023. -
Genomic analysis uncovers syphilis transmission networks in England
Dall C. CIDRAP, Sep 18, 2023. -
OECD calls for package of One Health policies to limit impact of antibiotic resistance
Dall C. CIDRAP, Sep 15, 2023. -
Study: Hospital wastewater system a 'highway' for resistant bacteria
Dall C. CIDRAP, Sep 15, 2023. -
Building off ChatGPT Popularity, Generative AI Starts Finding its Place in Genome Informatics
Versel N. GenomeWeb, Sep 20, 2023. -
$4.5 million USDA grant funds SARS-CoV-2 wildlife sampling
Van Beusekom M. CIDRAP, Sep 15, 2023. -
Genetic Predisposition: Neanderthal Genes Linked to Severe COVID-19
Kamrani K. Anthropology.net, Sep 18, 2023.
EVENTS / TRAINING / WEB RESOURCES
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Whole genomes from bacteria collected at diagnostic units around the world 2020.
Sidsel Nag et al. Sci Data 2023 9 (1) 628 -
Understanding the Global Gain-of-Function Research Landscape
Schuerger C, et al. Center for Security and Emerging Technology (CSET), Aug 2023. -
Reimagining scientific conferences-a Keystone Symposia report.
Shannon Weiman et al. Ann N Y Acad Sci 2023 8 (1) 49-59
CONCEPTS / COMMENTS
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Economic evaluations of whole-genome sequencing for pathogen identification in public health surveillance and health-care-associated infections: a systematic review.
My Tran et al. Lancet Microbe 2023 9 -
Editorial: Genomics-based strategies for advanced drug resistance and epidemiological surveillance of Mycobacterium tuberculosis and other non-tuberculous mycobacteria.
Arash Ghodousi et al. Front Microbiol 2023 9 1264285 -
Defining a research agenda for environmental wastewater surveillance of pathogens.
Alexander G Shaw et al. Nat Med 2023 8 (9) 2155-2157 -
The COVID-19 pandemic reveals the wide-ranging role of biobanks.
Dovile Juozapaite et al. Front Public Health 2023 9 1256601 -
Predicting the virulence of future emerging zoonotic viruses.
Samuel Alizon et al. PLoS Biol 2023 9 (9) e3002286 -
Nanopore-sequencing-based method for rapid poliovirus detection during outbreaks.
et al. Nat Microbiol 2023 9 -
Unveiling the genomic landscape of malaria in natural infections.
Sarah Auburn et al. Nat Rev Microbiol 2023 9 (10) 633
METHODS / TOOLS
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Fast and Accurate Maximum-Likelihood Estimation of Multi-Type Birth-Death Epidemiological Models from Phylogenetic Trees.
Anna Zhukova et al. Syst Biol 2023 9 -
Precision metagenomics sequencing for food safety: hybrid assembly of Shiga toxin-producing Escherichia coli in enriched agricultural water.
Meghan Maguire et al. Front Microbiol 2023 9 1221668
EVOLUTION / ECOLOGY / POPULATIONS
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Serratia marcescens Outbreak at a Correctional Facility: Environmental Sampling, Laboratory Analyses and Genomic Characterization to Assess Sources and Persistence.
Donna Ferguson et al. Int J Environ Res Public Health 2023 9 (17) -
Global diversity and antimicrobial resistance of typhoid fever pathogens: Insights from a meta-analysis of 13,000 Salmonella Typhi genomes.
Megan E Carey et al. Elife 2023 9 -
The genomes of the yaws bacterium, Treponema pallidum subsp. pertenue, of nonhuman primate and human origin are not genomically distinct.
Klára Janecková et al. PLoS Negl Trop Dis 2023 9 (9) e0011602 -
Intra-host mutation rate of acute SARS-CoV-2 infection during the initial pandemic wave.
Kim El-Haddad et al. Virus Genes 2023 6 (5) 653-661 -
The evolution of SARS-CoV-2 and the COVID-19 pandemic.
Yuanfang Si et al. PeerJ 2023 9 e15990 -
Distinct monkeypox virus lineages co-circulating in humans before 2022.
Nnaemeka Ndodo et al. Nat Med 2023 9 (9) 2317-24 -
Notes from the Field: Circulating Vaccine-Derived Poliovirus Type 2 Emergences Linked to Novel Oral Poliovirus Vaccine Type 2 Use — Six African Countries, 2021–2023
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Understanding the divergent evolution and epidemiology of H3N8 influenza viruses in dogs and horses.
Brian R Wasik et al. Virus Evol 2023 9 (2) vead052 -
Genome-informed investigation of the molecular evolution and genetic reassortment of severe fever with thrombocytopenia syndrome virus.
Kyuyoung Lee et al. PLoS Negl Trop Dis 2023 9 (9) e0011630 -
Candida auris: a global pathogen that has taken root in Colombia.
Patricia Escandón et al. Biomedica 2023 9 (Sp. 1) 278-287 -
Plasmodium falciparum population structure inferred by msp1 amplicon sequencing of parasites collected from febrile patients in Kenya.
Brian Andika et al. Malar J 2023 9 (1) 263 -
Occurrence of digenean parasites in freshwater snails in the Murrumbidgee catchment area, Australia.
Shokoofeh Shamsi et al. Food Waterborne Parasitol 2023 9 e00202
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
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Genomic characterization of cocirculating Corynebacterium diphtheriae and non-diphtheritic Corynebacterium species among forcibly displaced Myanmar nationals, 2017-2019.
Lingzi Xiaoli et al. Microb Genom 2023 9 (9) -
Molecular characterization of Streptococcus pneumoniae causing disease among children in Nigeria during the introduction of PCV10 (GSK).
Stephanie W Lo et al. Microb Genom 2023 9 (9) -
In host evolution of beta lactam resistance during active treatment for Pseudomonas aeruginosa bacteremia.
Natasha Spottiswoode et al. Front Cell Infect Microbiol 2023 9 1241608 -
Molecular characterization of MRSA collected during national surveillance between 2008 and 2019 in the Netherlands.
Leo M Schouls et al. Commun Med (Lond) 2023 9 (1) 123 -
Identification of potential pathogenic targets and survival strategies of Vibrio vulnificus through population genomics.
Jia-Xin Zhang et al. Front Cell Infect Microbiol 2023 9 1254379 -
Complete genome assembly of Hawai'i environmental nontuberculous mycobacteria reveals unexpected co-isolation with methylobacteria.
Jo Hendrix et al. PLoS One 2023 9 (9) e0291072 -
Molecular mechanisms of SARS-CoV-2 resistance to nirmatrelvir.
Yinkai Duan et al. Nature 2023 9 -
Prevalence of viral load suppression and acquired drug resistance among people living with HIV in Nepal- a nationally representative surveillance study.
Keshab Deuba et al. J Glob Antimicrob Resist 2023 9
DETECTION / DIAGNOSIS
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Evaluation of the application of sequence data to the identification of outbreaks of disease using anomaly detection methods.
José Manuel Díaz-Cao et al. Vet Res 2023 9 (1) 75 -
Two Artificial Tears Outbreak-Associated Cases of Extensively Drug-Resistant Pseudomonas aeruginosa Detected Through Whole Genome Sequencing-Based Surveillance.
Alexander J Sundermann et al. J Infect Dis 2023 9 -
Active surveillance of carbapenemase-producing Enterobacterales using genomic sequencing for hospital-based infection control interventions.
Andie S Lee et al. Infect Control Hosp Epidemiol 2023 9 1-7 -
Genomic classification and antimicrobial resistance profiling of Streptococcus pneumoniae and Haemophilus influenza isolates associated with paediatric otitis media and upper respiratory infection.
Briallen Lobb et al. BMC Infect Dis 2023 9 (1) 596 -
A Single-laboratory Performance Evaluation of MALDI-TOF MS in Rapid Identification of Staphylococcus aureus, Cronobacter sakazakii, Vibrio parahaemolyticus, and Some Closely Related Bacterial Species of Public Health Importance.
Irshad M Sulaiman et al. J AOAC Int 2023 9 -
Large-scale characterisation of hospital wastewater system microbiomes and clinical isolates from infected patients: profiling of multidrug-resistant microbial species.
Stephen A Kelly et al. J Hosp Infect 2023 9 -
Genomic epidemiology of Neisseria gonorrhoeae in Shenzhen, China, during 2019-2020: increased spread of ceftriaxone-resistant isolates brings insights for strengthening public health responses.
Di Wang et al. Microbiol Spectr 2023 9 e0172823 -
A response playbook for early detection and population surveillance of new SARS-CoV-2 variants in a regional public health laboratory
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More Than Results: The Clinical and Research Relationship in the Evolving Detection and Surveillance of SARS-CoV-2.
Brandon N Johnson et al. S D Med 2023 9 (6) 248-256 -
SARS-CoV-2 surface contamination in metro-Atlanta grocery stores.
Travis W Brown et al. PLoS One 2023 9 (9) e0291747 -
Wastewater Surveillance Data as a Complement to Emergency Department Visit Data for Tracking Incidence of Influenza A and Respiratory Syncytial Virus - Wisconsin, August 2022-March 2023.
Peter M DeJonge et al. MMWR Morb Mortal Wkly Rep 2023 9 (37) 1005-1009 -
Precision detection of recent HIV infections using high-throughput genomic incidence assay.
Gina Faraci et al. Microbiol Spectr 2023 9 e0228523 -
Genomic Sequencing Surveillance to Identify Respiratory Syncytial Virus Mutations, Arizona, USA.
LaRinda A Holland et al. Emerg Infect Dis 2023 9 (11) -
A strategy for entomo-virological surveillance of yellow fever, dengue, zika, and chikungunya viruses in field-collected mosquitoes.
María-Angélica Calderón-Peláez et al. MethodsX 2023 9 102356 -
Co-circulation of Chikungunya virus, Zika virus, and serotype 1 of Dengue virus in Western Bahia, Brazil.
Marcus Vinicius de França Cirilo et al. Front Microbiol 2023 9 1240860 -
Whole Genome Sequencing for Rapid Characterization of Rabies Virus Using Nanopore Technology.
Criselda Bautista et al. J Vis Exp 2023 9 (198) -
Surveillance of drug resistance molecular markers in Plasmodium vivax before and after introduction of dihydroartemisinin and piperaquine in Thailand: 2009-2019.
Nutnicha Suphakhonchuwong et al. Parasitol Res 2023 9
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
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Genomic Epidemiologic Investigation of a Multispecies Hospital Outbreak of NDM-5-Producing Enterobacterales Infections.
Nathan J Raabe et al. medRxiv 2023 9 -
Spatial and phylogenetic patterns reveal hidden infection sources of Bacillus anthracis in an anthrax outbreak in son La province, Vietnam.
Morgan C Metrailer et al. Infect Genet Evol 2023 9 105496 -
Predicting Food Sources of Listeria monocytogenes Based on Genomic Profiling Using Random Forest Model.
Weidong Gu et al. Foodborne Pathog Dis 2023 9 -
Gut microbiome perturbation, antibiotic resistance, and Escherichia coli strain dynamics associated with international travel: a metagenomic analysis.
Colin J Worby et al. Lancet Microbe 2023 9 -
Longitudinal genomic surveillance of carriage and transmission of Clostridioides difficile in an intensive care unit
Miles-Jay A, et al. Nat Med, Sep 18, 2023. -
Genomic epidemiology of syphilis in England: a population-based study.
Mathew A Beale et al. Lancet Microbe 2023 9 -
Within-host diversity improves phylogenetic and transmission reconstruction of SARS-CoV-2 outbreaks.
Arturo Torres Ortiz et al. Elife 2023 9 -
Maternal A90V mutation in the PreS1 gene of sub-genotype C2 hepatitis B virus is associated with intrauterine transmission.
Linzhu Yi et al. Rev Inst Med Trop Sao Paulo 2023 9 e46 -
Viral genetic clustering and transmission dynamics of the 2022 mpox outbreak in Portugal.
Vítor Borges et al. Nat Med 2023 9 -
Transmitted drug resistance and transmission clusters among ART-naïve HIV-1-infected individuals from 2019 to 2021 in Nanjing, China.
Yuanyuan Xu et al. Front Public Health 2023 9 1179568
ANTIMICROBIALS / VACCINES / INTERVENTIONS
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Safety and Immunogenicity of XBB.1.5-Containing mRNA Vaccines
Chalkias S, et al.Sep 7, 2023. -
A drug repurposing screen for whipworms informed by comparative genomics.
Avril Coghlan et al. PLoS Negl Trop Dis 2023 9 (9) e0011205
HOST-MICROBE INTERACTIONS
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Changes in the Vaginal Microbiome During Pregnancy and the Postpartum Period in South African Women: a Longitudinal Study.
Katherine T Li et al. Reprod Sci 2023 9 -
A GWAS in the pandemic epicenter highlights the severe COVID-19 risk locus introgressed by Neanderthals
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Proviral location affects cognate peptide-induced virus production and immune recognition of HIV-1-infected T cell clones.
Filippo Dragoni et al. J Clin Invest 2023 9
Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by Public Health Genomics Branch to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
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- Page last updated:May 2, 2024
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