Advanced Molecular Detection Clips Content (Published on 09/14/2017)
Reconstruction of Nearly 8,000 Microbial Genomes Expands Phylogenetic Diversity
GenomeWeb, Sep 11, 2017.
The race for a Zika vaccine slows, a setback for efforts to head off future outbreaks
Branswell H. STAT, Sep 13, 2017.
New Influenza Tests Faster, More Accurate, Study Suggests
Frellick M. Medscape, Sep 8, 2017.
Malaria Transmission From Monkeys to Humans, Study Finds
Kelly JC. Medscape, Sep 7, 2017.
Gut germs play role in multiple sclerosis, studies show. Are probiotics for MS next?
S Begley. StatNews, Sep 11, 2017.
Protein Links Gut Microbes, Biological Clocks, and Weight Gain
Collins F. NIH Director's Blog, Sep 12, 2017.
EVENTS / TRAINING / WEB RESOURCES
The rise of whole genome microbial sequencing: A new era for human microbiome analysis
(webinar) Noon, Oct 4, 2017. Register at webinar.sciencemag.org.
CONCEPTS / COMMENTS
DNA Sensing across the Tree of Life.
Gallucci Stefania et al. Trends in immunology 2017 Sep
If these data could talk.
Pasquier Thomas et al. Scientific data 2017 Sep 170114
Zika genomics urgently need standardized and curated reference sequences.
Theys Kristof et al. PLoS pathogens 2017 Sep (9) e1006528
Microbiome-Based Diagnostics: Ready for Applications in Laboratory Medicine?
Versalovic James et al. Clinical chemistry 2017 Sep
The resilience of the intestinal microbiota influences health and disease.
Sommer Felix et al. Nature reviews. Microbiology 2017 Oct (10) 630-638
METHODS / TOOLS
Shotgun metagenomics, from sampling to analysis.
Quince Christopher et al. Nature biotechnology 2017 Sep (9) 833-844
Length-independent DNA packing into nanopore zero-mode waveguides for low-input DNA sequencing.
Larkin Joseph et al. Nature nanotechnology 2017 Sep
Novel Stable Ebola Virus Minigenome Replicon Reveals Remarkable Stability of the Viral Genome.
Tao Wanyin et al. Journal of virology 2017 Sep
FunGAP: Fungal Genome Annotation Pipeline Using Evidence-based Gene Model Evaluation.
Min Byoungnam et al. Bioinformatics (Oxford, England) 2017 Jun
Advances in the application of genetic manipulation methods to Apicomplexan parasites.
Suarez C E et al. International journal for parasitology 2017 Sep
EVOLUTION / ECOLOGY / POPULATIONS
Whole genome sequencing of ESBL-producing Escherichia coli isolated from patients, farm waste and canals in Thailand.
Runcharoen Chakkaphan et al. Genome medicine 2017 Sep (1) 81
Genomic signature analysis of the recently emerged highly pathogenic A(H5N8) avian influenza virus: implying an evolutionary trend for bird-to-human transmission.
Xu Wei et al. Microbes and infection 2017 Sep
Genotypic and geographical distribution of porcine reproductive and respiratory syndrome viruses in mainland China in 1996-2016.
Gao Jia-Cong et al. Veterinary microbiology 2017 Sep 164-172
Re-Assembly and Analysis of an Ancient Variola Virus Genome.
Smithson Chad et al. Viruses 2017 Sep (9)
Whole-Genome Sequencing and Variant Analysis of Human Papillomavirus 16 Infections.
van der Weele Pascal et al. Journal of virology 2017 Oct (19)
Genetic analysis of ID1-DBL2X predicts its validity as a vaccine candidate in Colombia and supports at least two independently introduced Plasmodium falciparum populations in the region.
Rajwani J et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2017 Sep
Characterizing the virome of Ixodes ricinus ticks from northern Europe.
Pettersson John H-O et al. Scientific reports 2017 Sep (1) 10870
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
A Nosocomial Outbreak of Extensively Drug Resistant (XDR) Acinetobacter baumannii Isolates Containing blaOXA-237 Encoded on a Plasmid.
Hujer Andrea M et al. Antimicrobial agents and chemotherapy 2017 Sep
Genomic and Molecular Characterization of Clinical Isolates of Enterobacteriaceae Harboring mcr-1 in Colombia, 2002-2016.
Saavedra Sandra Yamile et al. Antimicrobial agents and chemotherapy 2017 Sep
Mycobacterium tuberculosis subculture results in loss of potentially clinically relevant heteroresistance.
Metcalfe John Z et al. Antimicrobial agents and chemotherapy 2017 Sep
HPV16 E7 Genetic Conservation Is Critical to Carcinogenesis.
Mirabello Lisa et al. Cell 2017 Sep (6) 1164-1174.e6
DETECTION / DIAGNOSIS
Development and validation of a High Resolution Melting Assay to detect azole resistance in Aspergillus fumigatus.
Bernal-Martínez L et al. Antimicrobial agents and chemotherapy 2017 Sep
Yersinia pestis detection by loop-mediated isothermal amplification combined with magnetic bead capture of DNA.
Feng Na et al. Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] 2017 Aug
Application of MALDI-TOF MS Systems in the Rapid Identification of Campylobacter spp. of Public Health Importance.
Hsieh Ying-Hsin et al. Journal of AOAC International 2017 Sep
Disseminated tuberculosis among hospitalised HIV patients in South Africa: a common condition that can be rapidly diagnosed using urine-based assays.
Kerkhoff Andrew D et al. Scientific reports 2017 Sep (1) 10931
Rapid detection of Powassan virus in a patient with encephalitis by metagenomic sequencing
Piantadosi A, et al. Clin Infect Dis, Sep 13, 2017.
Multicountry Validation of SAMBA - A Novel Molecular Point-of-Care Test for HIV-1 Detection in Resource-Limited Setting.
Ondiek Johnson et al. Journal of acquired immune deficiency syndromes (1999) 2017 Oct (2) e52-e57
The Use of Xenosurveillance to Detect Human Bacteria, Parasites, and Viruses in Mosquito Bloodmeals.
Fauver Joseph R et al. The American journal of tropical medicine and hygiene 2017 Aug (2) 324-329
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
Next Generation Sequencing for the investigation of an Outbreak of Salmonella Schwarzengrund in Nanjing, China.
Du Xuefei et al. International journal of biological macromolecules 2017 Sep
Assessing the danger of self-sustained HIV epidemics in heterosexuals by population based phylogenetic cluster analysis.
Turk Teja et al. eLife 2017 Sep
HIV Transmission Dynamics among Foreign-born Persons in the United States.
Valverde Eduardo E et al. Journal of acquired immune deficiency syndromes (1999) 2017 Sep
Molecular epidemiology and environmental contamination during an outbreak of parainfluenza virus 3 in a hematology ward.
Kim Taeeun et al. The Journal of hospital infection 2017 Sep
ANTIMICROBIALS / VACCINES / INTERVENTIONS
Improved Vaccine against PRRSV: Current Progress and Future Perspective.
Nan Yuchen et al. Frontiers in microbiology 2017 1635
Early nasopharyngeal microbial signature associated with severe influenza in children: a retrospective pilot study.
Langevin Stanley et al. The Journal of general virology 2017 Sep
Fatal acute hepatic failure in a family infected with the hepatitis A virus subgenotype IB: A case report.
Yoshida Yuichi et al. Medicine 2017 Sep (35) e7847
The salivary microbiome is consistent between subjects and resistant to impacts of short-term hospitalization.
Cabral Damien J et al. Scientific reports 2017 Sep (1) 11040
Alterations of the Gut Microbiome in Hypertension.
Yan Qiulong et al. Frontiers in cellular and infection microbiology 2017 381
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