Advanced Molecular Detection Clips Content (Published on 09/07/2023)
NEWS
-
Scientists Discover 'Pure Math' Is Written Into Evolutionary Genetics
Watson C. ScienceAlert, Sep 5, 2023. -
High resistance to last-resort antibiotic observed in some clinical isolates
Dall C. CIDRAP, Sep 5, 2023 -
More COVID-19 studies suggest BA.2.86 may be less immune-evasive than feared
Schnirring L. CIDRAP, Sep 5, 2023. -
Common coronavirus may prime immune system to develop long COVID
Van Beusekom M. CIDRAP, Sep 5, 2023. -
The US quietly terminates a controversial $125m wildlife virus hunting programme amid safety fears
Willman D. BMJ, Sep 7, 2023. -
Study spotlights breakthrough mpox in gay, bisexual men
Van Beusekom M. CIDRAP, Sep 5, 2023.
EVENTS / TRAINING / WEB RESOURCES
-
Wastewater-based disease surveillance for public health action
(interactive) NASEM, 2023.
CONCEPTS / COMMENTS
-
Harnessing deep learning for population genetic inference.
Xin Huang et al. Nat Rev Genet 2023 9
METHODS / TOOLS
-
DecentTree: Scalable Neighbour-Joining for the Genomic Era.
Weiwen Wang et al. Bioinformatics 2023 8 -
Navigating the Landscape: A Comprehensive Review of Current Virus Databases
Ritsch M, et al. Viruses, Aug 29, 2023. -
VIRify: An integrated detection, annotation and taxonomic classification pipeline using virus-specific protein profile hidden Markov models.
Guillermo Rangel-Pineros et al. PLoS Comput Biol 2023 8 (8) e1011422
EVOLUTION / ECOLOGY / POPULATIONS
-
Clonal expansion and rapid characterization of Klebsiella pneumoniae ST1788, an otherwise uncommon strain spreading in Wales, UK.
Massimo Mentasti et al. Microb Genom 2023 9 (9) -
Analysis of Escherichia coli O157 strains in cattle and humans between Scotland and England & Wales: implications for human health.
Margo Chase-Topping et al. Microb Genom 2023 9 (9) -
Phylogenomic analysis of a global collection of Escherichia coli ST38: evidence of interspecies and environmental transmission?
Piklu Roy Chowdhury et al. mSystems 2023 9 e0123622 -
Genomic epidemiology of SARS-CoV-2 variants in South Korea between January 2020 and February 2023.
Il-Hwan Kim et al. Virology 2023 9 109869 -
Genomic characterization of respiratory syncytial virus genotypes circulating in the paediatric population of Sydney, NSW, Australia.
Krisna N A Pangesti et al. Microb Genom 2023 9 (9) -
Genomic epidemiology unveils the dynamics and spatial corridor behind the Yellow Fever virus outbreak in Southern Brazil.
Marta Giovanetti et al. Sci Adv 2023 9 (35) eadg9204 -
Genomic diversity and evolution analysis of severe fever with thrombocytopenia syndrome in East Asia from 2010 to 2022.
Yao Wang et al. Front Microbiol 2023 9 1233693
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
-
Temporal changes in antibiotic resistance and population structure of methicillin-resistant Staphylococcus pseudintermedius between 2010 and 2021 in the United States.
Lufuno Phophi et al. Comp Immunol Microbiol Infect Dis 2023 7 102028 -
Rapid expansion of Neisseria gonorrhoeae ST7827 clone in Australia, with variable ceftriaxone phenotype unexplained by genotype.
S J van Hal et al. J Antimicrob Chemother 2023 7 (9) 2203-2208 -
Population structure and antimicrobial resistance patterns of Salmonella Typhi and Paratyphi A amid a phased municipal vaccination campaign in Navi Mumbai, India.
Kesia Esther da Silva et al. mBio 2023 7 (4) e0117923 -
Whole-genome sequencing for One Health surveillance of antimicrobial resistance in conflict zones: a case study of Salmonella spp. and Campylobacter spp. in the West Bank, Palestine.
Said Abukhattab et al. Appl Environ Microbiol 2023 9 e0065823 -
Integrons, transposons and IS elements promote diversification of multidrug resistance plasmids and adaptation of their hosts to antibiotic pollutants from pharmaceutical companies.
Masaki Shintani et al. Environ Microbiol 2023 9 -
Acquisition of a large virulence plasmid (pINV) promoted temperature-dependent virulence and global dispersal of O96:H19 enteroinvasive Escherichia coli.
Sydney L Miles et al. mBio 2023 5 (4) e0088223 -
Whole genome sequencing of human Borrelia burgdorferi isolates reveals linked blocks of accessory genome elements located on plasmids and associated with human dissemination.
Jacob E Lemieux et al. PLoS Pathog 2023 8 (8) e1011243 -
Phylogenetic lineages and antimicrobial resistance determinants of clinical Klebsiella oxytoca spanning local to global scales.
Odion O Ikhimiukor et al. Microbiol Spectr 2023 9 e0054923 -
Prevalence of HIV-1 drug resistance mutations in proviral DNA in the Swiss HIV Cohort Study, a retrospective study from 1995 to 2018.
Bashkim Jaha et al. J Antimicrob Chemother 2023 8 (9) 2323-2334 -
Non-adaptive evolution in codon usage of human-origin monkeypox virus.
Xu Guo et al. Comp Immunol Microbiol Infect Dis 2023 7 102024
DETECTION / DIAGNOSIS
-
Metagenomic sequencing of post-mortem tissue samples for the identification of pathogens associated with neonatal deaths.
Vicky L Baillie et al. Nat Commun 2023 9 (1) 5373 -
Application of environmental sampling to investigate a case of avian chlamydiosis in a pet store and breeding facility leading to mass bird exposures.
Jesse Bonwitt et al. Zoonoses Public Health 2023 5 (6) 572-577 -
Implementation of targeted next-generation sequencing for the diagnosis of drug-resistant tuberculosis in low-resource settings: a programmatic model, challenges, and initial outcomes.
Leonardo de Araujo et al. Front Public Health 2023 9 1204064 -
A single-molecule RNA electrical biosensor for COVID-19.
Keshani G Gunasinghe Pattiya Arachchillage et al. Biosens Bioelectron 2023 8 115624 -
First cases of SARS-CoV-2 BA.2.86 in Denmark, 2023.
Morten Rasmussen et al. Euro Surveill 2023 9 (36) -
A standardised protocol for relative SARS-CoV-2 variant severity assessment, applied to Omicron BA.1 and Delta in six European countries, October 2021 to February 2022.
Tommy Nyberg et al. Euro Surveill 2023 9 (36) -
Interpretation of molecular detection of avian influenza A virus in respiratory specimens collected from live bird market workers in Dhaka, Bangladesh: Infection or contamination?
Dr Md Zakiul Hassan et al. Int J Infect Dis 2023 8 -
Developing Molecular Surveillance Capacity for Asymptomatic and Drug-Resistant Malaria in a Resource-Limited Setting-Experiences and Lessons Learned.
Kay Thwe Han et al. Am J Trop Med Hyg 2022 7 (2) 222-230 -
Evaluation of nuclear and mitochondrial phylogenetics for the subtyping of Cyclospora cayetanensis.
Jean P González-Gómez et al. Parasitol Res 2023 9
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
-
Genomic analysis of Chlamydia psittaci from a multistate zoonotic outbreak in two chicken processing plants.
Bernard J Wolff et al. J Genomics 2023 9 40-44 -
Outbreak of OXA-232-producing carbapenem-resistant Klebsiella pneumoniae ST15 in a Chinese teaching hospital: a molecular epidemiological study.
Xiaoyan Wu et al. Front Cell Infect Microbiol 2023 9 1229284 -
Outbreak of Multidrug-Resistant Tuberculosis - Kansas, 2021-2022.
Elizabeth Groenweghe et al. MMWR Morb Mortal Wkly Rep 2023 8 (35) 957-960 -
The importance of utilizing travel history metadata for informative phylogeographical inferences: a case study of early SARS-CoV-2 introductions into Australia.
Ashleigh F Porter et al. Microb Genom 2023 8 (8) -
Transmission of SARS-CoV-2 among recruits in a US Army training environment: a brief report.
Shilpa Hakre et al. J Public Health (Oxf) 2023 5 (3) 748-752 -
Molecular HIV Clustering Among Individuals with Mpox and HIV Co-morbidity in New York State, Excluding New York City.
Randall Collura et al. AIDS Res Hum Retroviruses 2023 9 -
Ongoing measles outbreaks in Romania, March 2023 to August 2023.
Mihaela Lazar et al. Euro Surveill 2023 8 (35)
HOST-MICROBE INTERACTIONS
-
Africa-specific human genetic variation near CHD1L associates with HIV-1 load.
Paul J McLaren et al. Nature 2023 8 (7976) 1025-1030 -
Germline-encoded specificities and the predictability of the B cell response.
Marcos C Vieira et al. PLoS Pathog 2023 8 (8) e1011603
Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by Public Health Genomics Branch to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
- Page last reviewed:Feb 1, 2024
- Page last updated:May 2, 2024
- Content source: