Advanced Molecular Detection Clips Content (Published on 09/06/2018)
NEWS
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Genomic study of 412 anthrax strains provides new virulence clues
Toon J. Phys.Org, Aug 30, 2018. -
Google unveils search engine for open data
Castelvecchi D. Nature, Sep 5, 2018. -
Low-Frequency Antibiotic Resistance Mutations Revealed by New Amplicon Sequencing Method
Anderson A. GenomeWeb, Sep 6, 2018. -
Chaos-inducing genetic approach stymies antibiotic-resistant superbugs
Science Daily, Sep 3, 2018. -
Experts brace for more super-resistant gonorrhea
Dall C. CIDRAP, Sep 4, 2018. -
Study cites 'contagion' as main factor in antimicrobial resistance levels
Dall C. CIDRAP, Sep 5, 2018. -
New York to Reduce TB Susceptibility Testing Based on Whole-Genome Sequencing Data
GenomeWeb, Aug 29, 2018. -
New single-dose antiviral cuts flu symptoms, viral loads
Soucheray S. CIDRAP, Sep 5, 2018. -
For the first time, researchers will release genetically engineered mosquitoes in Africa
Swetlitz I. STAT, Sep 5, 2018. -
Scientists Are Retooling Bacteria to Cure Disease
Zimmer C. New York Times, Sep 4, 2018.
EVENTS / TRAINING / WEB RESOURCES
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Pathogen genomics is transforming infectious disease surveillance
(news release, link to report) PHGF, Aug 20, 2018. -
Best Match: New relevance search for PubMed.
Fiorini Nicolas et al. PLoS biology 2018 Aug (8) e2005343 -
Integrating Responses at the Intersection of Opioid Use Disorder and Infectious Disease Epidemics
(report) NASEM, Sep 2018. -
A Guide to Utilization of the Microbiology Laboratory for Diagnosis of Infectious Diseases: 2018 Update by the Infectious Diseases Society of America and the American Society for Microbiology.
Miller J Michael et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2018 Aug (6) 813-816
CONCEPTS / COMMENTS
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All study participants have a right to know their own results. My lab has been doing that for years
Brody JG. STAT, Sep 5, 2018.
METHODS / TOOLS
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Sampling considerations for a potential Zika virus urosurvey in New York City.
C N Thompson et al. Epidemiol Infect 2018 8 (13) 1628-1634 -
A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life.
Parks Donovan H et al. Nature biotechnology 2018 Aug -
Impact of the tree prior on estimating clock rates during epidemic outbreaks.
Möller Simon et al. Proceedings of the National Academy of Sciences of the United States of America 2018 04 (16) 4200-4205 -
Comprehensive antibiotic-linked mutation assessment by resistance mutation sequencing (RM-seq).
Guérillot Romain et al. Genome medicine 2018 Aug (1) 63
EVOLUTION / ECOLOGY / POPULATIONS
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Attack of the clones: whole genome-based characterization of two closely related enterohemorrhagic Escherichia coli O26 epidemic lineages.
Karnisova Lucia et al. BMC genomics 2018 Aug (1) 647 -
Whole genome sequencing reveals the emergence of a Pseudomonas aeruginosa shared strain sub-lineage among patients treated within a single cystic fibrosis centre.
Wee Bryan A et al. BMC genomics 2018 Aug (1) 644 -
Genomic analysis of multi-resistant Staphylococcus capitis associated with neonatal sepsis.
Carter Glen P et al. Antimicrobial agents and chemotherapy 2018 Aug -
Characterization of Unknown Orthobunya-Like Viruses from India.
Whitmer Shannon L M et al. Viruses 2018 08 (9) -
Phylogenetic characterization of norovirus strains detected from sporadic gastroenteritis in Seoul during 2014-2016.
Kim Young Eun et al. Gut pathogens 2018 36
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
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New Variant of Multidrug-Resistant Salmonella enterica Serovar Typhimurium Associated with Invasive Disease in Immunocompromised Patients in Vietnam.
Mather Alison E et al. mBio 2018 Sep (5) -
Global spread of three multidrug-resistant lineages of Staphylococcus epidermidis.
Lee Jean Y H et al. Nature microbiology 2018 Sep -
Epistatic control of intrinsic resistance by virulence genes in Listeria.
Scortti Mariela et al. PLoS genetics 2018 Sep (9) e1007525 -
Escherichia coli ST131- H 22 as a Foodborne Uropathogen.
Liu Cindy M et al. mBio 2018 Aug (4)
DETECTION / DIAGNOSIS
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Rapid detection and discrimination of chromosome- and MCR-plasmid-mediated resistance to polymyxins by MALDI-TOF MS in Escherichia coli: the MALDIxin test.
Dortet Laurent et al. The Journal of antimicrobial chemotherapy 2018 Sep -
Fast update of undetected Mycobacterium chimaera infections to reveal unsuspected cases.
Acosta Fermín et al. The Journal of hospital infection 2018 Sep -
Viral discovery as a tool for pandemic preparedness.
Epstein J H et al. Revue scientifique et technique (International Office of Epizootics) 2017 Aug (2) 499-512 -
Syndrome Evaluation System for Simultaneous Detection Pathogens Causing Acute Encephalitic Syndrome in India, Part-1: Development and Standardization of the Assay.
Govekar Sunil et al. Frontiers in medicine 2018 208 -
Assessment of ultra-sensitive malaria diagnosis versus standard molecular diagnostics for malaria elimination: an in-depth molecular community cross-sectional study.
Hofmann Natalie E et al. The Lancet. Infectious diseases 2018 Aug -
The rapid detection method by polymerase chain reaction for minute intestinal trematodes: Haplorchis taichui in intermediate snail hosts based on 18s ribosomal DNA.
Chontananarth Thapana et al. Journal of parasitic diseases : official organ of the Indian Society for Parasitology 2018 Sep (3) 423-432
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
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Investigation and source-tracing of an anthrax outbreak in Gansu Province, China.
Yu Deshan et al. PloS one 2018 (8) e0203267 -
Group A Streptococcus Outbreak in a Canadian Armed Forces Training Facility.
Hammond-Collins Karon et al. Military medicine 2018 Aug -
Epidemiological and genomic characterization of community-acquired Clostridium difficile infections.
Thornton Christina S et al. BMC infectious diseases 2018 Aug (1) 443 -
Genomic and epidemiological monitoring of yellow fever virus transmission potential.
Faria N R et al. Science (New York, N.Y.) 2018 Aug (6405) 894-899 -
Ethical considerations in global HIV phylogenetic research.
Coltart Cordelia E M et al. The lancet. HIV 2018 Aug -
Outbreak of Adenovirus in a Neonatal Intensive Care Unit: Critical Importance of Equipment Cleaning During Inpatient Ophthalmologic Examinations.
Sammons Julia S et al. Ophthalmology 2018 Sep -
HIV-1 Transmissions Among Recently Infected Individuals in Southwest China are Predominantly Derived from Circulating Local Strains.
Li Jianjun et al. Scientific reports 2018 Aug (1) 12831
ANTIMICROBIALS / VACCINES / INTERVENTIONS
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High-throughput drug screening using the ebola virus transcription- and replication-competent virus-like particle system.
Lee Nakyung et al. Antiviral research 2018 Aug
HOST-MICROBE INTERACTIONS
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Why is congenital Zika syndrome asymmetrically distributed among human populations?
Barbeito-Andrés Jimena et al. PLoS biology 2018 Aug (8) e2006592 -
An Increased Frequency in HLA Class I Alleles and Haplotypes Suggests Genetic Susceptibility to Influenza A (H1N1) 2009 Pandemic: A Case-Control Study.
Falfán-Valencia Ramcés et al. Journal of immunology research 2018 3174868 -
Strand-Specific Dual RNA Sequencing of Bronchial Epithelial Cells Infected with Influenza A/H3N2 Viruses Reveals Splicing of Gene Segment 6 and Novel Host-Virus Interactions.
Fabozzi Giulia et al. Journal of virology 2018 09 (17) -
The Roles of 27 Genera of Human Gut Microbiota in Ischemic Heart Disease, Type 2 Diabetes Mellitus, and Their Risk Factors: A Mendelian Randomization Study.
Yang Qian et al. American journal of epidemiology 2018 Sep (9) 1916-1922 -
Bile Acids, the Microbiome, Immunity, and Liver Tumors.
Schramm Christoph et al. The New England journal of medicine 2018 08 (9) 888-890
Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by Public Health Genomics Branch to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
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