Advanced Molecular Detection Clips Content (Published on 08/31/2023)
EVENTS / TRAINING / WEB RESOURCES
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Grand challenges in bioinformatics education and training.
Esra Büsra Isik et al. Nat Biotechnol 2023 8 (8) 1171-1174 -
Enhancing capacity for national genomics surveillance of antimicrobial resistance in public health laboratories in Kenya.
Collins Kigen et al. Microb Genom 2023 8 (8) -
Applying Lessons Learned from COVID-19 Research and Development to Future Epidemics
CONCEPTS / COMMENTS
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Will climate change amplify epidemics and give rise to pandemics?
De Oliveira T, Tegally H. Science, Aug 25, 2023. -
The public health significance of finding autochthonous melioidosis cases in the continental United States.
Alfredo G Torres et al. PLoS Negl Trop Dis 2023 8 (8) e0011550
METHODS / TOOLS
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Accurate and fast graph-based pangenome annotation and clustering with ggCaller.
Samuel T Horsfield et al. Genome Res 2023 8 -
Pangenome graphs in infectious disease: a comprehensive genetic variation analysis of Neisseria meningitidis leveraging Oxford Nanopore long reads.
Zuyu Yang et al. Front Genet 2023 8 1225248 -
Viral Instant Mutation Viewer: A Tool to Speed Up the Identification and Analysis of New SARS-CoV-2 Emerging Variants and Beyond.
Vincent Wilde et al. Viruses 2023 8 (8) -
Understanding the host-pathogen evolutionary balance through Gaussian process modeling of SARS-CoV-2.
Salvatore Loguercio et al. Patterns (N Y) 2023 8 (8) 100800 -
NAIR: Network Analysis of Immune Repertoire.
Hai Yang et al. Front Immunol 2023 8 1181825 -
Integrating Patient Metadata and Genetic Pathogen Data: Advancing Pandemic Preparedness with a Multi-Parametric Simulator
Bonjean M, et al. bioRxiv, Aug 23, 2023.
EVOLUTION / ECOLOGY / POPULATIONS
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Multi-host infection and phylogenetically diverse lineages shape the recombination and gene pool dynamics of Staphylococcus aureus.
Stephanie S R Souza et al. BMC Microbiol 2023 8 (1) 235 -
Genomic epidemiology sheds light on the emergence and spread of Mycobacterium bovis Eu2 Clonal Complex in Portugal.
André C Pereira et al. Emerg Microbes Infect 2023 8 2253340 -
Analysis of SARS-CoV-2 Population Genetics from Samples Associated with Huanan Market and Early Cases Identifies Substitutions Associated with Future Variants of Concern.
Xiaofeng Dong et al. Viruses 2023 8 (8) -
SARS-CoV-2 genomic characterization and evolution in China.
Peng Zhang et al. Heliyon 2023 8 (8) e18980 -
Accelerated evolution of SARS-CoV-2 in free-ranging white-tailed deer
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Update on the Phylodynamic and Genetic Variability of Marburg Virus.
Fabio Scarpa et al. Viruses 2023 8 (8) -
Indoor Bacterial and Fungal Burden in "Moldy" versus "Non-Moldy" Homes: A Case Study Employing Advanced Sequencing Techniques in a US Metropolitan Area.
Bhavin V Chauhan et al. Pathogens 2023 8 (8) -
Multilocus Microsatellite Analysis of the Molecular Epidemiology of Microsporum canis Isolated in Japan.
Takashi Mochizuki et al. Med Mycol J 2023 8 (3) 63-72 -
De novo assembled mitogenome analysis of Trichuris trichiura from Korean individuals using nanopore-based long-read sequencing technology.
James Owen Delaluna et al. PLoS Negl Trop Dis 2023 8 (8) e0011586
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
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Characteristics and genomic epidemiology of colistin-resistant Enterobacterales from farmers, swine, and hospitalized patients in Thailand, 2014-2017.
Adhiratha Boonyasiri et al. BMC Infect Dis 2023 8 (1) 556 -
The rapid emergence of antifungal-resistant human-pathogenic fungi.
Shawn R Lockhart et al. Nat Rev Microbiol 2023 8 -
Plasmodium falciparum resistant to artemisinin and diagnostics have emerged in Ethiopia.
Abebe A Fola et al. Nat Microbiol 2023 8 -
Comparative Transcriptomic Analysis of Insecticide-Resistant Aedes aegypti from Puerto Rico Reveals Insecticide-Specific Patterns of Gene Expression.
Dieunel Derilus et al. Genes (Basel) 2023 8 (8)
DETECTION / DIAGNOSIS
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Rapid and simple Multiple-Locus Variable-Number Tandem Repeat Analysis, a reliable tool for Klebsiella pneumoniae outbreak screening.
Clotilde Legouge et al. J Hosp Infect 2023 8 -
Transmission of clones of carbapenem-resistant Escherichia coli between a hospital and an urban wastewater treatment plant.
Di Wang et al. Environ Pollut 2023 8 122455 -
Screening for Resistant Bacteria, Antimicrobial Resistance Genes, Sexually Transmitted Infections and Schistosoma spp. in Tissue Samples from Predominantly Vaginally Delivered Placentae in Ivory Coast and Ghana.
Roman Franz et al. Pathogens 2023 8 (8) -
Metagenomic next-generation sequencing for Mycobacterium tuberculosis complex detection: a meta-analysis.
Yulian Li et al. Front Public Health 2023 8 1224993 -
Wastewater-Based Surveillance of Antimicrobial Resistance in Niger: An Exploratory Study.
Sani Ousmane et al. Am J Trop Med Hyg 2023 8 -
Longitudinal and quantitative fecal shedding dynamics of SARS-CoV-2, pepper mild mottle virus, and crAssphage.
Peter J Arts et al. mSphere 2023 6 (4) e0013223 -
Interlaboratory comparison using inactivated SARS-CoV-2 variants as a feasible tool for quality control in COVID-19 wastewater monitoring.
Alexander Wilhelm et al. Sci Total Environ 2023 8 166540 -
Emerging Genomic Trends on Rabies Virus in Davao Region, Philippines, 2018-2021.
Jessel Babe G Capin et al. Viruses 2023 8 (8) -
Wastewater-based epidemiology revealed in advance the increase of enterovirus circulation during the Covid-19 pandemic.
Pellegrinelli Laura et al. Sci Total Environ 2023 8 166539 -
HDV RNA Assays: Performance characteristics, clinical utility and challenges.
Heiner Wedemeyer et al. Hepatology 2023 8 -
Wastewater-based epidemiology: the crucial role of viral shedding dynamics in small communities.
Marc-Denis Rioux et al. Front Public Health 2023 8 1141837 -
Molecular surveillance of Plasmodium falciparum drug-resistance markers in Vietnam using multiplex amplicon sequencing (2000-2016).
Eduard Rovira-Vallbona et al. Sci Rep 2023 8 (1) 13948 -
The limit of detection of the BioFire® FilmArray® gastrointestinal panel for the foodborne parasite Cyclospora cayetanensis.
Anna Peterson et al. Diagn Microbiol Infect Dis 2023 8 (2) 116030 -
A machine learning classifier using 33 host immune response mRNAs accurately distinguishes viral and non-viral acute respiratory illnesses in nasal swab samples.
Rushika Pandya et al. Genome Med 2023 8 (1) 64
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
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Genomic tracking and precise control of Klebsiella pneumoniae transmission in a newly established hospital: a prospective molecular epidemiological study.
Yi Zhang et al. Int J Antimicrob Agents 2023 7 (3) 106910 -
Community Outbreak of Pseudomonas aeruginosa Infections Associated with Contaminated Piercing Aftercare Solution, Australia, 2021.
Benjamin T Trevitt et al. Emerg Infect Dis 2023 8 (10)
ANTIMICROBIALS / VACCINES / INTERVENTIONS
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Malaria Genomics, Vaccine Development, and Microbiome
Su X, et al. Pathogens, Aug 18, 2023.
HOST-MICROBE INTERACTIONS
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Gut microbiota and fecal short chain fatty acids differ with adiposity and country of origin: the METS-microbiome study.
Gertrude Ecklu-Mensah et al. Nat Commun 2023 8 (1) 5160 -
Human microbiome variation associated with race and ethnicity emerges as early as 3 months of age.
Elizabeth K Mallott et al. PLoS Biol 2023 8 (8) e3002230
Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by Public Health Genomics Branch to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
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- Page last updated:Jan 9, 2025