Advanced Molecular Detection Clips Content (Published on 08/25/2022)
NEWS
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Scientists are racing to develop home tests that measure protection against Covid-19
Chen E. STAT, Aug 23, 2022. -
Your first brush with coronavirus could affect how a fall booster works
Johnson CY. Washington Post, Aug 23, 2022. -
The imminent BA.5 vaccine booster
(blog post) Topol E. Ground Truths, Aug 24, 2022. -
Trials for monkeypox antiviral, fractional vaccine dosing launch
Soucheray S. CIDRAP, Aug 23, 2022. -
Monkeypox epicenter moves from Europe to Americas
Soucheray S. CIDRAP, Aug 25, 2022. -
New Ebola case confirmed in eastern Congo, linked to previous outbreak
Reuters, Aug 23, 2022. -
Spate of polio outbreaks worldwide puts scientists on alert
Ledford H. Nature, Aug 22, 2022. -
Australia’s catastrophic rabbit invasion sparked by a few dozen British bunnies
Mallapaty S. Nature, Aug 22, 2022. -
White House directs agencies to make federally funded studies free to access
Owermohle S. STAT, Aug 25, 2022.
EVENTS / TRAINING / WEB RESOURCES
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August 2022 EVD case in DRC linked to 2018-2020 Nord Kivu EVD outbreak
Mbala-Kingebeni P. Virological.org, Aug 22, 2022.
POLICY
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Ensuring Free, Immediate, and Equitable Access to Federally Funded Research
(guidance memo) OSTP, White House, Aug 25, 2022.
CONCEPTS / COMMENTS
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Understanding leptospirosis: application of state-of-the-art molecular typing tools with a One Health lens.
Sykes Jane E et al. American journal of veterinary research 2022 8 (10) -
Genomic population structures of microbial pathogens
Holt KE, et al. Philos Trans R Soc Lond B Biol Sci. 2022 Oct 10;377(1861):20210230. -
Wildlife trade is likely the source of SARS-CoV-2
Jiang X, Wang R. Science, Aug 25, 2022. -
Urgent need for a non-discriminatory and non-stigmatizing nomenclature for monkeypox virus.
Happi Christian et al. PLoS biology 2022 8 (8) e3001769 -
Fragmented outbreak data will lead to a repeat of COVID-19
Kucharski A. Nature, Aug 23, 2022.
METHODS / TOOLS
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Establishing a national reference laboratory for antimicrobial resistance using a whole-genome sequencing framework: Nigeria's experience.
Okeke Iruka N et al. Microbiology (Reading, England) 2022 8 (8) -
The effect of sequencing and assembly on the inference of horizontal gene transfer on chromosomal and plasmid phylogenies
Huisman JS, et al. Philos Trans R Soc Lond B Biol Sci. 2022 Oct 10;377(1861):20210245. -
Deep clustering of bacterial tree images
Hayati M, et al. Philos Trans R Soc Lond B Biol Sci. 2022 Oct 10;377(1861):20210231. -
A scalable analytical approach from bacterial genomes to epidemiology
Didelot X, Parkhill J. Philos Trans R Soc Lond B Biol Sci. 2022 Oct 10;377(1861):20210246. -
EnteroBase: hierarchical clustering of 100 000s of bacterial genomes into species/subspecies and populations
Achtman M, et al. Philos Trans R Soc Lond B Biol Sci. 2022 Oct 10;377(1861):20210240. -
Harmonisation of in-silico next-generation sequencing based methods for diagnostics and surveillance.
Nunez-Garcia J et al. Scientific reports 2022 8 (1) 14372 -
Intrahost SARS-CoV-2 k-mer identification method (iSKIM) for rapid detection of mutations of concern reveals emergence of global mutation patterns
Thommana A, et al. bioRxiv, Aug 16, 2022. -
Establishment of the large-scale longitudinal multi-omics dataset in COVID-19 patients: data profile and biospecimen.
Jo Hye-Yeong et al. BMB reports 2022 8 -
Enhancing global preparedness during an ongoing pandemic from partial and noisy data
Klamser PP, et al. medRxiv, Aug 22, 2022.
EVOLUTION / ECOLOGY / POPULATIONS
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Emergence of a multidrug-resistant and virulent Streptococcus pneumoniae lineage mediates serotype replacement after PCV13: an international whole-genome sequencing study.
Lo Stephanie W et al. The Lancet. Microbe 2022 8 -
Shiga toxin-producing Escherichia coli clonal complex 32, including serotype O145:H28, in the UK and Ireland.
Rodwell Ella V et al. Journal of medical microbiology 2022 8 (8) -
Within-host genetic diversity of SARS-CoV-2 in the context of large-scale hospital-associated genomic surveillance
Mushegian AA, et al. medRxiv, Aug 19, 2022. -
Genetic diversity and spread dynamics of SARS-CoV-2 variants present in African populations
Mtetwa D, et al. bioRxiv, Aug 17, 2022. -
Tracking the turnover of SARS-CoV-2 VOCs Gamma to Delta in a Brazilian state (Minas Gerais) with a high-vaccination status.
Fonseca Paula L C et al. Virus evolution 2022 8 (2) veac064 -
Analysis of the mutation dynamics of SARS-CoV-2 genome in the samples from Georgia State of the United States.
Ahmad Waqas et al. Gene 2022 7 146774 -
Multiple Introductions of SARS-CoV-2 Alpha and Delta Variants into White-Tailed Deer in Pennsylvania.
Marques Andrew D et al. mBio 2022 8 e0210122 -
Emergence and Spread of the SARS-CoV-2 Variant of Concern Delta across Different Brazilian Regions.
Arantes Ighor et al. Microbiology spectrum 2022 8 e0264121 -
Recombination shapes 2022 monkeypox outbreak
Yeh TY, et al. medRxiv, Aug 18, 2022. -
Detection of a Novel African Swine Fever Virus with Three Large-Fragment Deletions in Genome, China.
Sun Yankuo et al. Microbiology spectrum 2022 8 e0215522 -
Detection of Endosymbiont Candidatus Midichloria mitochondrii and Tickborne Pathogens in Humans Exposed to Tick Bites, Italy.
Sgroi Giovanni et al. Emerging infectious diseases 2022 8 (9) 1824-1832 -
Genome-wide analysis of Schistosoma mansoni reveals limited population structure and possible praziquantel drug selection pressure within Ugandan hot-spot communities.
Vianney Tushabe John et al. PLoS neglected tropical diseases 2022 8 (8) e0010188
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
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Epidemiology of Plasmid Lineages Mediating the Spread of Extended-Spectrum Beta-Lactamases among Clinical Escherichia coli.
Mahmud Bejan et al. mSystems 2022 8 e0051922 -
Contrasting long-term dynamics of antimicrobial resistance and virulence plasmids in Salmonella Typhimurium from animals.
Mellor Kate C et al. Microbial genomics 2022 8 (8) -
High fluoroquinolone resistance proportions among multidrug-resistant tuberculosis driven by dominant L2 Mycobacterium tuberculosis clones in the Mumbai Metropolitan Region.
Dreyer Viola et al. Genome medicine 2022 8 (1) 95 -
Epidemiology and genomic analysis of Klebsiella oxytoca from a single hospital network in Australia.
Stewart James et al. BMC infectious diseases 2022 8 (1) 704 -
Incubation Period of COVID-19 Caused by Unique SARS-CoV-2 Strains: A Systematic Review and Meta-analysis.
Wu Yu et al. JAMA network open 2022 8 (8) e2228008
DETECTION / DIAGNOSIS
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Comprehensive Surveillance and Sampling Reveal Carbapenem-Resistant Organism Spreading in Tertiary Hospitals in China
Zhang Y, et al. Infect Drug Resist, Aug 17, 2022. -
Clonal serotype 1c multidrug-resistant Shigella flexneri detected in multiple institutions by sentinel-site sequencing.
Ko Karrie K K et al. Frontiers in medicine 2022 8 964640 -
Delineating Mycobacterium abscessus population structure and transmission employing high-resolution core genome multilocus sequence typing.
Diricks Margo et al. Nature communications 2022 8 (1) 4936 -
Laboratory Misidentifications Resulting from Taxonomic Changes to Bacillus cereus Group Species, 2018-2022.
Carroll Laura M et al. Emerging infectious diseases 2022 8 (9) 1877-1881 -
Collection and detection of SARS-CoV-2 in exhaled breath using face mask.
Kim Hwang-Soo et al. PloS one 2022 8 (8) e0270765 -
High-Contact Object and Surface Contamination in a Household of Persons with Monkeypox Virus Infection — Utah, June 2022
Pfeiffer JA, et al. MMWR, Aug 19, 2022. -
First detection of Monkeypox virus genome in sewersheds in France
Wurtzer S, et al. medRxiv, Aug 19, 2022. -
Portable nucleic acid tests for rapid detection of monkeypox virus
Bhadra S, Ellington AD. medRxiv, Aug 10, 2022. -
Strengthened surveillance revealed a rapid disappearance of the poliovirus serotype 2 vaccine strain in Madagascar after its removal from the oral polio vaccine.
Razafindratsimandresy Richter et al. Journal of medical virology 2022 8 -
The performance of using dried blood spot specimens for HIV-1 viral load testing: A systematic review and meta-analysis.
Vojnov Lara et al. PLoS medicine 2022 8 (8) e1004076
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
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Genomic epidemiology of the SARS-CoV-2 epidemic in Brazil.
Giovanetti Marta et al. Nature microbiology 2022 8 -
Understanding early pandemic SARS-CoV-2 transmission in a medical center by incorporating public sequencing databases to mitigate bias
Turcinovic J, et al. J Infect Dis. 2022 Aug 22;jiac348. -
Cross-Border Transmissions of the Delta Substrain AY.29 During Tokyo Olympic and Paralympic Games
Koyama T, et al. Front Microbiol. 2022 Aug 3;13:883849. -
Swiss public health measures associated with reduced SARS-CoV-2 transmission using genome data
Nadeau S, et al. medRxiv, Aug 22, 2022. -
Monkeypox Virus Infection in Humans across 16 Countries - April-June 2022.
Thornhill John P et al. The New England journal of medicine 2022 7 (8) 679-691 -
Patterns and correlates of hepatitis C virus phylogenetic clustering among people living with HIV in Australia in the direct-acting antiviral era: A molecular epidemiology study among participants in the CEASE cohort.
Bartlett Sofia R et al. Health science reports 2022 8 (5) e719 -
Molecular Epidemiology of Blastomyces gilchristii Clusters, Minnesota, USA.
Bagal Ujwal R et al. Emerging infectious diseases 2022 8 (9) 1924-1926
ANTIMICROBIALS / VACCINES / INTERVENTIONS
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Application of a novel lytic phage vB_EcoM_SQ17 for the biocontrol of Enterohemorrhagic Escherichia coli O157:H7 and Enterotoxigenic E. coli in food matrices.
Zhou Yan et al. Frontiers in microbiology 2022 8 929005 -
Genomic characteristics of two most widely used BCG vaccine strains: Danish 1331 and Pasteur 1173P2.
Asadian Mahla et al. BMC genomics 2022 8 (1) 609 -
A genetically engineered Plasmodium falciparum parasite vaccine provides protection from controlled human malaria infection.
Murphy Sean C et al. Science translational medicine 2022 8 (659) eabn9709
HOST-MICROBE INTERACTIONS
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Clinical implications of host genetic variation and susceptibility to severe or critical COVID-19.
van der Made Caspar I et al. Genome medicine 2022 8 (1) 96 -
Neutrophil proteomics identifies temporal changes and hallmarks of delayed recovery in COVID19
Long MB, et al. medRxiv, Aug 22, 2022. -
Soluble CD14-associated DNA methylation sites predict mortality among men with HIV infection.
Titanji Boghuma K et al. AIDS (London, England) 2022 8 (11) 1563-1571
Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by Public Health Genomics Branch to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
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- Page last updated:Apr 25, 2024
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