Advanced Molecular Detection Clips Content (Published on 08/24/2023)
NEWS
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UK posts initial COVID-19 BA.2.86 risk assessment
Scnirring L. CIDRAP, Aug 21, 2023. -
Why a highly mutated coronavirus variant has scientists on alert
Callaway E. Nature, Aug 21, 2023. -
CDC weighs risk of BA.2.86 COVID-19 lineage as 3 more nations report sequences
Schnirring L. CIDRAP, Aug 23, 2023. -
Why Blood Type Seems to Be Linked With COVID-19 Risk
Rubin R. JAMA, Aug 16, 2023.
EVENTS / TRAINING / WEB RESOURCES
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Risk assessment for SARS-CoV-2 variant V-23AUG-01 (or BA.2.86)
(report) UK Health Security Agency, August 18, 2023.
CONCEPTS / COMMENTS
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Genomic, clinical and immunity data join forces for public health.
Amber Barton et al. Nat Rev Microbiol 2023 8 -
The viral origin of myalgic encephalomyelitis/chronic fatigue syndrome.
Maureen R Hanson et al. PLoS Pathog 2023 8 (8) e1011523 -
Pandemic potential of poxviruses: From an ancient killer causing smallpox to the surge of monkeypox.
Harald Brüssow et al. Microb Biotechnol 2023 6 (9) 1723-1735
METHODS / TOOLS
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TheiaEuk: a species-agnostic bioinformatics workflow for fungal genomic characterization.
Frank J Ambrosio et al. Front Public Health 2023 8 1198213 -
SnakeLines: integrated set of computational pipelines for sequencing reads.
Jaroslav Budiš et al. J Integr Bioinform 2023 8 -
Technology transfer during the COVID-19 pandemic: report on the first face-to-face practical training course in Brazil.
Fernanda Khouri Barreto et al. Epidemiol Serv Saude 2023 8 (2) e2022614 -
Utilizing Recombinant Reporter Henipaviruses to Conduct Antiviral Screening.
Michael K Lo et al. Methods Mol Biol 2023 8 87-92
EVOLUTION / ECOLOGY / POPULATIONS
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The emergence of Omicron VOC and its rapid spread and persistence in the Western Amazon.
Gabriella Sgorlon et al. PLoS One 2023 8 (8) e0285742 -
Orthohantavirus infections in humans and rodents in the Yichun region, China, from 2016 to 2021.
Shi-Wen Liu et al. PLoS Negl Trop Dis 2023 8 (8) e0011540 -
Investigating the Genetic Diversity of H5 Avian Influenza Viruses in the United Kingdom from 2020-2022.
Alexander M P Byrne et al. Microbiol Spectr 2023 6 (4) e0477622 -
Genome-wide study of globally distributed respiratory syncytial virus (RSV) strains implicates diversification utilizing phylodynamics and mutational analysis.
Tushar Ahmed Shishir et al. Sci Rep 2023 8 (1) 13531
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
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Clonal dissemination of Klebsiella pneumoniae resistant to cefiderocol, ceftazidime/avibactam, meropenem/vaborbactam and imipenem/relebactam co-producing KPC and OXA-181 carbapenemase.
Federica Bovo et al. JAC Antimicrob Resist 2023 8 (4) dlad099 -
Increasing trend of healthcare-associated infections due to vancomycin-resistant Enterococcus faecium (VRE-fm) paralleling escalating community-acquired VRE-fm infections in a medical center implementing strict contact precautions: An epidemiologic and pathogenic genotype analysis and its implications.
Ya-Fen Tang et al. J Microbiol Immunol Infect 2023 8 -
Population Analysis of Escherichia coli Sequence Type 361 and Reduced Cefiderocol Susceptibility, France.
Agnès B Jousset et al. Emerg Infect Dis 2023 8 (9) 1877-1881 -
Reoccurring Escherichia coli O157:H7 Strain Linked to Leafy Greens-Associated Outbreaks, 2016-2019.
Jessica C Chen et al. Emerg Infect Dis 2023 8 (9) 1895-1899 -
Evolution of Partial Resistance to Artemisinins in Malaria Parasites in Uganda.
Melissa D Conrad et al. N Engl J Med 2023 8 (8) 722-732 -
Monitoring mosquito richness in an understudied area: can environmental DNA metabarcoding be a complementary approach to adult trapping?
Rafael Gutiérrez-López et al. Bull Entomol Res 2023 5 (4) 456-468
DETECTION / DIAGNOSIS
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bettercallsal: better calling of Salmonella serotypes from enrichment cultures using shotgun metagenomic profiling and its application in an outbreak setting.
Kranti Konganti et al. Front Microbiol 2023 8 1200983 -
Highly multiplexed targeted sequencing strategy for infectious disease surveillance.
Iván Hernández-Neuta et al. BMC Biotechnol 2023 8 (1) 31 -
Neighbourhood watch: genomic epidemiology of SARS-CoV-2 variants circulating in a German federal state, Mecklenburg-Western Pomerania, in 2020-2022.
Christian Kohler et al. Emerg Microbes Infect 2023 8 (2) 2245916 -
Comparison of Four Active SARS-CoV-2 Surveillance Strategies in Representative Population Sample Points: Two-Factor Factorial Randomized Controlled Trial.
Andreas Deckert et al. JMIR Public Health Surveill 2023 5 e44204 -
Multiplex Assays Enable Simultaneous Detection and Identification of SARS-CoV-2 Variants of Concern in Clinical and Wastewater Samples.
Yanming Liu et al. ACS Meas Sci Au 2023 8 (4) 258-268 -
Molecular surveillance of arboviruses in Nigeria.
Joseph Ojonugwa Shaibu et al. BMC Infect Dis 2023 8 (1) 538 -
Sensitive poliovirus detection using nested PCR and nanopore sequencing: a prospective validation study.
Alexander G Shaw et al. Nat Microbiol 2023 8 -
Molecular Characterization of Circulating Yellow Fever Viruses from Outbreak in Ghana, 2021-2022.
Joseph Humphrey Kofi Bonney et al. Emerg Infect Dis 2023 8 (9) 1818-1826 -
A Revised Diagnostic Quantitative RT-PCR for the Detection of Nipah Virus Infection.
Ketan Patel et al. Methods Mol Biol 2023 8 25-31
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
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Genomic and epidemiological perspectives on the first local sporadic cases of Mpox in China.
Hongling Jia et al. Emerg Microbes Infect 2023 8 (2) 2245932
Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by Public Health Genomics Branch to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
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- Page last updated:Jan 16, 2025