Advanced Molecular Detection Clips Content (Published on 08/10/2023)
NEWS
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A new U.S. agency is a response to the fact that nobody was ready for the pandemic
Pfeiffer S. NPR, Aug 3, 2023. -
Meet the scientists trying to stop the next global pandemic from starting in Africa
Bajaj S, Tsanni A. STAT, Aug 9, 2023. -
Study mapping how SARS-CoV-2 disrupts mitochondria suggests a cause for long Covid
Cooney E. STAT, Aug 9, 2023. -
The Virus is Learning New Tricks and We Humans Keep Falling Behind
(blog post) Topol E. Ground Truths, Aug 6, 2023. -
Cats to Be Given Human COVID-19 Drugs After Outbreak Leaves Thousands Dead
Thomson J. Newsweek, Aug 4, 2023. -
How We Used Machine Learning to Investigate Where Ebola May Strike
Chen C, et al. ProPublica, Aug 8, 2023. -
Study highlights resistance genes in shiga toxin-producing E coli
Dall C. CIDRAP, Aug 7, 2023.
CONCEPTS / COMMENTS
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Research Alliance for Veterinary Science and Biodefense BSL-3 Network (RAV3N): Report on network origin and phase I activities.
Carrie L Hunt et al. Antiviral Res 2023 8 105693 -
Insights into different populations’ immune responses to SARS-CoV-2 infection
Rotival M, Quintana-Murci L. Nature, Aug 7, 2023.
METHODS / TOOLS
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Drug resistance prediction for Mycobacterium tuberculosis with reference graphs.
Michael B Hall et al. Microb Genom 2023 8 (8)
EVOLUTION / ECOLOGY / POPULATIONS
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A 14th century CE Brucella melitensis genome and the recent expansion of the Western Mediterranean clade.
George S Long et al. PLoS Pathog 2023 7 (7) e1011538 -
Reconstruction of the last bacterial common ancestor from 183 pangenomes reveals a versatile ancient core genome.
Jason C Hyun et al. Genome Biol 2023 8 (1) 183 -
Risk assessment of SARS-CoV-2 replicating and evolving in animals.
Jin Zhao et al. Trends Microbiol 2023 8 -
Semi-infectious particles contribute substantially to influenza virus within-host dynamics when infection is dominated by spatial structure.
Alex Farrell et al. Virus Evol 2023 8 (1) vead020 -
The genomic landscape of swine influenza A viruses in Southeast Asia.
Michael A Zeller et al. Proc Natl Acad Sci U S A 2023 8 (33) e2301926120 -
Global and local evolutionary dynamics of Dengue virus serotypes 1, 3, and 4.
Arshi Islam et al. Epidemiol Infect 2023 6 e127 -
Evolutionary dynamics and adaptive analysis of Seneca Valley virus.
Weijun Zeng et al. Infect Genet Evol 2023 8 105488 -
Genetic profiles of Schistosoma haematobium parasites from Malian transmission hotspot areas.
Agniwo Privat et al. Parasit Vectors 2023 8 (1) 263 -
Host adaptation drives genetic diversity in a vector-borne disease system.
Matthew A Combs et al. PNAS Nexus 2023 8 (8) pgad234
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
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The bacterial genetic determinants of Escherichia coli capacity to cause bloodstream infections in humans.
Judit Burgaya et al. PLoS Genet 2023 8 (8) e1010842 -
Surveillance of antimicrobial resistant Shiga toxin-producing E. coli O157:H7 in England, 2016-2020.
David R Greig et al. J Antimicrob Chemother 2023 8 -
Isoniazid resistance-conferring mutations are associated with highly variable phenotypic resistance.
Senamile Lale Ngema et al. J Clin Tuberc Other Mycobact Dis 2023 8 100387 -
Genomic dissection of endemic carbapenem resistance reveals metallo-beta-lactamase dissemination through clonal, plasmid and integron transfer.
Nenad Macesic et al. Nat Commun 2023 8 (1) 4764
DETECTION / DIAGNOSIS
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Soft Tissue Infection of Immunocompetent Man with Cat-Derived Globicatella Species.
Nick K Jones et al. Emerg Infect Dis 2023 7 (8) 1684-1687 -
Implementation of targeted next-generation sequencing for the diagnosis of drug-resistant tuberculosis in low-resource settings: a programmatic model, challenges, and initial outcomes
de Araujo L, et al. Front Public Health, Aug 3, 2023. -
Economic and health impact modelling of a whole genome sequencing-led intervention strategy for bacterial healthcare-associated infections for England and for the USA.
John M Fox et al. Microb Genom 2023 8 (8) -
Detection of the SARS-CoV-2 Delta Variant in the Transboundary Rivers of Yunnan, China.
Xiao Zhang et al. ACS ES T Water 2023 8 (12) 2367-2377 -
Genomic epidemiology of SARS-CoV-2 in large university hospital cohort: the UnCoVER-Brazil project.
Felipe Santos de Carvalho et al. Epidemiol Infect 2023 7 e126 -
Portable RT-PCR and MinION Nanopore Sequencing as a Proof-of-Concept SARS-CoV-2 Biosurveillance in Wastewater.
Oksana M Pavlyuk et al. MSMR 2023 8 (5) 9-14 -
Advances in isothermal nucleic acid amplification methods for hepatitis B virus detection.
Huilin Li et al. Analyst 2023 7 (16) 3708-3718 -
Metagenomic surveillance uncovers diverse and novel viral taxa in febrile patients from Nigeria.
Judith U Oguzie et al. Nat Commun 2023 8 (1) 4693 -
Metagenomic sequencing for investigation of a national keratoconjunctivitis outbreak, Israel, 2022.
Yair Motro et al. Euro Surveill 2023 8 (31)
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
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An Outbreak of Salmonella Typhimurium Infections Linked to Ready-To-Eat Tofu in Multiple Health Districts — Ontario, Canada, May–July 2021
Osasah V, et al. MMWR, Aug 11, 2023. -
Posttransfusion Sepsis Attributable to Bacterial Contamination in Platelet Collection Set Manufacturing Facility, United States.
Ian Kracalik et al. Emerg Infect Dis 2023 8 (10) -
Outbreak of highly pathogenic avian influenza A(H5N1) clade 2.3.4.4b virus in cats, Poland, June to July 2023.
Katarzyna Domanska-Blicharz et al. Euro Surveill 2023 8 (31) -
Transmission of yellow fever vaccine virus through blood transfusion and organ transplantation in the USA in 2021: report of an investigation.
Carolyn V Gould et al. Lancet Microbe 2023 8 (9) e711-e721 -
Inferring Human Immunodeficiency Virus 1 Proviral Integration Dates With Bayesian Inference.
Bradley R Jones et al. Mol Biol Evol 2023 7 (8)
ANTIMICROBIALS / VACCINES / INTERVENTIONS
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A review of broadly protective monoclonal antibodies to treat Ebola virus disease.
Pramila Rijal et al. Curr Opin Virol 2023 7 101339
HOST-MICROBE INTERACTIONS
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Dissecting human population variation in single-cell responses to SARS-CoV-2.
Yann Aquino et al. Nature 2023 8
Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by Public Health Genomics Branch to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
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