Advanced Molecular Detection Clips Content (Published on 08/09/2018)
NEWS
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Bioinformatics Training Network Tries to Evolve as Genomics Advances
Versel N. GenomeWeb, Jul 31, 2018. -
Ebola outbreak in DRC sets up another test for experimental treatments
Branswell H. STAT, Aug 3, 2018. -
An Invasive New Tick Is Spreading in the U.S.
McNeil DG Jr. New York Times, Aug 6, 2018. -
Dengue rates plummet in Australian city after release of modified mosquitoes
Callaway E. Nature, Aug 8, 2018. -
The ghost of influenza past and the hunt for a universal vaccine
Butler D. Nature, Aug 8, 2018. -
Study suggests obesity may increase flu spread
Schnirring L. CIDRAP, Aug 2, 2018. -
Rotavirus Vaccines Success Influenced By Gut Microbes
Olena A. The Scientist, Aug 8, 2018. -
As microbiome testing firms proliferate, so do questions about their claims
Shaffer L. STAT, Aug 7, 2018.
EVENTS / TRAINING / WEB RESOURCES
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Implementing pathogen genomics: a case study
(downloadable booklet) Public Health England, Aug 2, 2018.
METHODS / TOOLS
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BTW-Bioinformatics Through Windows: an easy-to-install package to analyze marker gene data.
Morais Daniel et al. PeerJ 2018 e5299 -
Conducting metagenomic studies in microbiology and clinical research.
Martin Tiphaine C et al. Applied microbiology and biotechnology 2018 Aug -
Monitoring plasmid-mediated horizontal gene transfer in microbiomes: recent advances and future perspectives.
Pinilla-Redondo Rafael et al. Plasmid 2018 Aug
EVOLUTION / ECOLOGY / POPULATIONS
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Use of Canonical Single Nucleotide Polymorphism (CanSNPs) to characterize Bacillus anthracis outbreak strains in Zambia between 1990 and 2014.
Fasanella Antonio et al. PeerJ 2018 e5270 -
Taxonogenomics reveal multiple novel genomospecies associated with clinical isolates of Stenotrophomonas maltophilia.
Patil Prashant P et al. Microbial genomics 2018 Aug -
Pneumococcal vaccine impacts on the population genomics of non-typeable Haemophilus influenzae.
Cleary David et al. Microbial genomics 2018 Aug -
Capsule-Negative emm Types Are an Increasing Cause of Pediatric Group A Streptococcal Infections at a Large Pediatric Hospital in Texas.
Flores Anthony R et al. Journal of the Pediatric Infectious Diseases Society 2018 Aug -
Evidence for Host-Bacterial Co-evolution via Genome Sequence Analysis of 480 Thai Mycobacterium tuberculosis Lineage 1 Isolates.
Palittapongarnpim Prasit et al. Scientific reports 2018 Aug (1) 11597 -
HCV adaptation to HIV coinfection.
Lara James et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2018 Jul -
Molecular epidemiology and phylogenetics of human enteroviruses: Is there a forest behind the trees?
Lukashev Alexander N et al. Reviews in medical virology 2018 Aug e2002 -
Evolution of HIV-1 within untreated individuals and at the population scale in Uganda.
Raghwani Jayna et al. PLoS pathogens 2018 Jul (7) e1007167
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
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Mobile Genetic Elements Associated with Antimicrobial Resistance.
Partridge Sally R et al. Clinical microbiology reviews 2018 Oct (4) -
Genomic surveillance of Neisseria gonorrhoeae to investigate the distribution and evolution of antimicrobial-resistance determinants and lineages.
Yahara Koji et al. Microbial genomics 2018 Jul -
Extended-spectrum β-lactamase-encoding genes are spreading on a wide range of Escherichia coli plasmids existing prior to the use of third-generation cephalosporins.
Branger Catherine et al. Microbial genomics 2018 Aug -
Validation of novel Mycobacterium tuberculosis isoniazid resistance mutations not detectable by common molecular tests.
Kandler Justin L et al. Antimicrobial agents and chemotherapy 2018 Aug -
Mixed infections are associated with poor treatment outcomes among newly diagnosed tuberculosis patients independent of pre-treatment heteroresistance.
Shin Sanghyuk S et al. The Journal of infectious diseases 2018 Aug
DETECTION / DIAGNOSIS
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Simplified MLST scheme for direct typing of Leptospira human clinical samples.
Caimi Karina et al. Pathogens and global health 2018 Jul 1-7 -
Molecular-based Testing for Sexually Transmitted Infections Using Samples Previously Collected for Vaginitis Diagnosis.
Van Der Pol Barbara et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2018 Aug -
TB Transmission: Closing the Gaps.
Comas Iñaki et al. EBioMedicine 2018 Jul -
A Quantitative Evaluation of MIRU-VNTR Typing Against Whole-Genome Sequencing for Identifying Mycobacterium tuberculosis Transmission: A Prospective Observational Cohort Study.
Wyllie David H et al. EBioMedicine 2018 Aug -
Zika virus infection in Nicaraguan households.
Burger-Calderon Raquel et al. PLoS neglected tropical diseases 2018 05 (5) e0006518 -
A one-step real-time RT-PCR helps to identify mixed rotavirus infections in Mexico.
Anaya-Molina Yazmin et al. Diagnostic microbiology and infectious disease 2018 Jul -
Long-Range Polymerase Chain Reaction Method for Sequencing the Ebola Virus Genome From Ecological and Clinical Samples.
Seifert Stephanie N et al. The Journal of infectious diseases 2018 Aug -
Visual loop-mediated isothermal amplification (LAMP) for the rapid diagnosis of Enterocytozoon hepatopenaei (EHP) infection.
T Sathish Kumar et al. Parasitology research 2018 May (5) 1485-1493
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
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A prospective cohort study comparing household contact and water Vibrio cholerae isolates in households of cholera patients in rural Bangladesh.
George Christine Marie et al. PLoS neglected tropical diseases 2018 Jul (7) e0006641 -
Epidemiological and genomic determinants of tuberculosis outbreaks in First Nations communities in Canada.
Doroshenko Alexander et al. BMC medicine 2018 Aug (1) 128 -
A large healthcare-associated outbreak of hepatitis C virus genotype 1a in a clinic in Korea.
Chung Yoon-Seok et al. Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology 2018 Jul 53-57
ANTIMICROBIALS / VACCINES / INTERVENTIONS
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Progress Toward Poliomyelitis Eradication - Afghanistan, January 2017-May 2018.
Martinez Maureen et al. MMWR. Morbidity and mortality weekly report 2018 Aug (30) 833-837 -
Genetic approach towards a vaccine against malaria.
Garrido-Cardenas Jose Antonio et al. European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology 2018 Jun
HOST-MICROBE INTERACTIONS
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A genome-wide siRNA screen identifies a druggable host pathway essential for the Ebola virus life cycle.
Martin Scott et al. Genome medicine 2018 Aug (1) 58 -
An Atlas of Genetic Variation Linking Pathogen-Induced Cellular Traits to Human Disease
Wang L, et al. Cell Host Microbe, Aug 8, 2018.
Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by Public Health Genomics Branch to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
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