Advanced Molecular Detection Clips Content (Published on 07/27/2023)
NEWS
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FDA official pushes for a dedicated emerging pathogens team to prepare for the next pandemic
Bajaj S. STAT, Jul 21, 2023. -
A new era of pathogen surveillance using genomic sequencing
(interview) Open Access Government, Jul 19, 2023. -
It’s time to close the gene synthesis loophole that could lead to a human-made pandemic
Piper K. Vox, Jul 27, 2023. -
Wastewater surveillance may be best marker of community COVID-19 prevalence
Van Beusekom M. CIDRAP, Jul 26, 2023. -
The Ongoing Mystery of Covid’s Origin
Quammen D. New York Times, Jul 25, 2023. -
Study reveals why people with blood group A are ‘slightly more likely’ to acquire COVID-19
Southall J. Healio, Jul 20, 2023. -
Near-Zero Risk of HIV Transmission With Low Viral Loads
Susman E. MedPage Today, Jul 23, 2023, -
Exposure to resistant Aspergillus is widespread across UK, study finds
Dall C. CIDRAP, Jul 21, 2023.
POLICY
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Project NextGen - Defeating SARS-CoV-2 and Preparing for the Next Pandemic.
Xavier Becerra et al. N Engl J Med 2023 7
CONCEPTS / COMMENTS
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European Union Reference Laboratories support the National food, feed and veterinary Reference Laboratories with rolling out whole genome sequencing in Europe.
Valeria Michelacci et al. Microb Genom 2023 7 (7) -
Pandemic Demand for SARS-CoV-2 Testing Led to Critical Supply and Workforce Shortages in U.S. Clinical and Public Health Laboratories.
Nancy E Cornish et al. J Clin Microbiol 2023 4 (7) e0318920 -
CRISPR Libraries and Whole-Genome Screening to Identify Essential Factors for Viral Infections.
Isadora Marques Paiva et al. Adv Exp Med Biol 2023 7 157-172 -
Report of the third conference on next-generation sequencing for adventitious virus detection in biologics for humans and animals.
Arifa S Khan et al. Biologicals 2023 7 101696 -
Ten simple rules for scientists engaging in science communication
Borowiec BG. PLoS Comput Biol, Jul 20, 2023.
METHODS / TOOLS
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xenoGI 3: using the DTLOR model to reconstruct the evolution of gene families in clades of microbes.
Nuo Liu et al. BMC Bioinformatics 2023 7 (1) 295 -
CamPype: an open-source workflow for automated bacterial whole-genome sequencing analysis focused on Campylobacter.
Irene Ortega-Sanz et al. BMC Bioinformatics 2023 7 (1) 291 -
Ten quick tips for bioinformatics analyses using an Apache Spark distributed computing environment.
Davide Chicco et al. PLoS Comput Biol 2023 7 (7) e1011272 -
Calculating and applying pathogen mutational spectra using MutTui
Ruis C, et al. bioRxiv, Jun 15, 2023.
EVOLUTION / ECOLOGY / POPULATIONS
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Genome-wide phylodynamic approach reveals the epidemic dynamics of the main Mycoplasma bovis subtype circulating in France.
Julien Thézé et al. Microb Genom 2023 7 (7) -
Human Fecal Carriage of Streptococcus agalactiae Sequence Type 283, Thailand.
Timothy Barkham et al. Emerg Infect Dis 2023 7 (8) 1627-1629 -
Snakes and Souks: Zoonotic pathogens associated to reptiles in the Marrakech markets, Morocco.
Jairo Alfonso Mendoza-Roldan et al. PLoS Negl Trop Dis 2023 7 (7) e0011431 -
One Health Genomic Insights into the Host-Specific Evolution and Cross-Host Transmission of Staphylococcus aureus in Animal Farm Environments, Food of Animal Origin, and Humans.
Yu Pan et al. Int J Antimicrob Agents 2023 7 106932 -
Systematic genomic analysis of SARS-CoV-2 co-infections throughout the pandemic and segregation of the strains involved.
Daniel Peñas-Utrilla et al. Genome Med 2023 7 (1) 57 -
The distribution of hepatitis C viral genotypes shifted among chronic hepatitis C patients in Yunnan, China, between 2008-2018.
Yuanyuan Jia et al. Front Cell Infect Microbiol 2023 7 1092936 -
The human blood fluke, Schistosoma mansoni, harbours bacteria throughout the parasite's life cycle.
Fabio Formenti et al. J Infect Dis 2023 7
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
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Genome-Based Epidemiologic Analysis of VIM/IMP Carbapenemase-Producing Enterobacter spp., Poland.
Radoslaw Izdebski et al. Emerg Infect Dis 2023 7 (8) 1618-1626 -
Dominance of Escherichia coli sequence types ST73, ST95, ST127 and ST131 in Australian urine isolates: a genomic analysis of antimicrobial resistance and virulence linked to F plasmids.
Dmitriy Li et al. Microb Genom 2023 7 (7) -
Population structure, serotype distribution and antibiotic resistance of Streptococcus pneumoniae causing invasive disease in Victoria, Australia.
Charlie Higgs et al. Microb Genom 2023 7 (7) -
Genomic epidemiology of Streptococcus dysgalactiae subsp. equisimilis strains causing invasive disease in Norway during 2018.
Alba Kaci et al. Front Microbiol 2023 7 1171913 -
Antiviral susceptibility of clade 2.3.4.4b highly pathogenic avian influenza A(H5N1) viruses isolated from birds and mammals in the United States, 2022.
Ha T Nguyen et al. Antiviral Res 2023 7 105679 -
Citizen science reveals landscape-scale exposures to multiazole-resistant Aspergillus fumigatus bioaerosols.
Jennifer M G Shelton et al. Sci Adv 2023 7 (29) eadh8839
DETECTION / DIAGNOSIS
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Prospecting for Zoonotic Pathogens by Using Targeted DNA Enrichment.
Egie E Enabulele et al. Emerg Infect Dis 2023 7 (8) 1566-1579 -
Streptococcus pneumoniae nasal carriage patterns with and without common respiratory virus detections in households in Seattle, WA, USA before and during the COVID-19 pandemic.
Julia C Bennett et al. Front Pediatr 2023 7 1198278 -
Evaluation of an identification method for the SARS-CoV-2 Delta variant based on the amplification-refractory mutation system.
Qin Zhang et al. Front Cell Infect Microbiol 2023 7 1180297 -
Economic Evaluation of Wastewater Surveillance Combined with Clinical COVID-19 Screening Tests, Japan.
Byung-Kwang Yoo et al. Emerg Infect Dis 2023 7 (8) 1608-1617 -
Use of Wastewater Metrics to Track COVID-19 in the US.
Meri R J Varkila et al. JAMA Netw Open 2023 7 (7) e2325591 -
Detection of mpox virus in ambient air in a sexual health clinic.
Joren Raymenants et al. Arch Virol 2023 7 (8) 210 -
Surveillance and Genomic Characterization of Influenza A and D Viruses in Swine, Belgium and the Netherlands, 2019-2021.
Anna Parys et al. Emerg Infect Dis 2023 6 (7) 1459-1464 -
Response to Vaccine-Derived Polioviruses Detected through Environmental Surveillance, Guatemala, 2019.
Rodrigo Rodríguez et al. Emerg Infect Dis 2023 7 (8) 1524-1530
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
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Multidrug-Resistant Shigella sonnei Bacteremia among Persons Experiencing Homelessness, Vancouver, British Columbia, Canada.
A Stefanovic et al. Emerg Infect Dis 2023 7 (8) 1668-1671 -
Outbreaks of Campylobacteriosis Caused by Drinking Raw Milk in Japan: Evidence of Relationship Between Milk and Patients by Using Whole Genome Sequencing.
Yuta Ohno et al. Foodborne Pathog Dis 2023 7 -
Investigation of a Salmonella Montevideo Outbreak Related to the Environmental Contamination of a Restaurant Kitchen Drainage System, Québec, Canada, 2020-2021.
André Paradis et al. J Food Prot 2023 7 100131 -
Notes from the Field: An Outbreak of Shiga Toxin-Producing Escherichia coli O157:H7 Associated with a Farming Camp - Tennessee, 2022.
Lindsey Ferraro et al. MMWR Morb Mortal Wkly Rep 2023 7 (29) 805-806 -
Genomic assessment of invasion dynamics of SARS-CoV-2 Omicron BA.1.
Joseph L-H Tsui et al. Science 2023 7 (6655) 336-343 -
Superspreading of SARS-CoV-2 Omicron BA.2.23 among vaccinated Finnish adults: symptomatic COVID-19 only contracted by those without recent infection.
Marianna Riekkinen et al. Epidemiol Infect 2023 7 e113 -
Characteristics of genotype, drug resistance, and molecular transmission network among newly diagnosed HIV-1 infections in Shenzhen, China.
Minchao Li et al. J Med Virol 2023 7 (7) e28973 -
Molecular networks reveal complex interactions with MSM in heterosexual women living with HIV-1 who play peripheral roles in Guangzhou, China.
Wenting Zeng et al. Acta Trop 2023 5 106953 -
HIV-1 Transmission Cluster in Injection Drug Users in Nairobi City, Kenya.
Sella K Webale et al. Ethiop J Health Sci 2023 7 (2) 203-210
ANTIMICROBIALS / VACCINES / INTERVENTIONS
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Novel pneumococcal capsule type 33E results from the inactivation of glycosyltransferase WciE in vaccine type 33F.
Feroze A Ganaie et al. J Biol Chem 2023 7 105085
HOST-MICROBE INTERACTIONS
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Gene signature discovery and systematic validation across diverse clinical cohorts for TB prognosis and response to treatment.
Roger Vargas et al. PLoS Comput Biol 2023 7 (7) e1010770 -
Saliva microbiome in relation to SARS-CoV-2 infection in a prospective cohort of healthy US adults.
Abigail J S Armstrong et al. EBioMedicine 2023 7 104731 -
Mpox vaccine and infection-driven human immune signatures: an immunological analysis of an observational study.
Hallie Cohn et al. Lancet Infect Dis 2023 7 (11) 1302-1312 -
H3N2 influenza A virus gradually adapts to human-type receptor binding and entry specificity after the start of the 1968 pandemic.
Mengying Liu et al. Proc Natl Acad Sci U S A 2023 7 (31) e2304992120 -
High throughput human genotyping for variants associated with malarial disease outcomes using custom targeted amplicon sequencing.
Ashley Osborne et al. Sci Rep 2023 7 (1) 12062 -
A Novel HPV/Host DNA Methylation-Score and Detection of Cervical Adenocarcinoma.
Ana Gradissimo et al. J Natl Cancer Inst 2023 7
Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by Public Health Genomics Branch to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
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- Page last updated:Apr 25, 2024
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