Advanced Molecular Detection Clips Content (Published on 07/20/2023)
NEWS
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As pandemic raged, global south lacked vaccines. Never again, researchers vow.
Maxmen A. Washington Post, Jul 16, 2023. -
Germs, genes and soil: tales of pathogens past
Dance A. Nature, Jul 12, 2023. -
Africa CDC, WHO, Robert Koch Institute Launch Disease Surveillance Partnership
GenomeWeb, Jul 18, 2023. -
Gene variant may be why some test positive for virus with no covid symptoms
Yarber AL. Washington Post, Jul 19, 2023. -
Study shows dogs can detect COVID-19 faster, better than most PCR tests
Soucheray S. CIDRAP, Jul 18, 2023. -
Gut Microbiome Differences Uncovered in Severe Versus Moderate COVID-19
GenomeWeb, Jul 17, 2023. -
Zoo outbreak highlights human-to-animal COVID-19 risk
Soucheray S. CIDRAP, Jul 14, 2023. -
Experts warn about feline coronavirus after ‘thousands’ of cat deaths in Cyprus
Devlin H, Geddes L. Guardian, Jul 18, 2023. -
Phylogenetic Analysis Estimates Emergence of Rabies Virus
GenomeWeb, Jul 17, 2023. -
Biden Administration Moves to Ban Funding for Wuhan Lab
Stolberg SG. New York Times, Jul 18, 2023.
EVENTS / TRAINING / WEB RESOURCES
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Forum on Microbial Threats: Annual Report 2022.
(report) NASEM, 2023. -
Future of the Nation's Laboratory Systems for Health Emergency Response: Proceedings of a Workshop–in Brief.
(report) NASEM, 2023.
CONCEPTS / COMMENTS
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Leveraging artificial intelligence in the fight against infectious diseases.
Felix Wong et al. Science 2023 7 (6654) 164-170 -
Tackling covid-19 variants.
Kayoko Shioda et al. BMJ 2023 7 p1603 -
Editorial: Emerging SARS-CoV-2 variants: genomic variations, transmission, pathogenesis, clinical impact, and interventions, volume II.
Pragya D Yadav et al. Front Med (Lausanne) 2023 7 1215309 -
How to fight antibiotic resistance.
Mike May et al. Nat Med 2023 7 (7) 1583-1586
METHODS / TOOLS
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Evaluation of the Illumina iSeq whole genome sequencing system for enteric disease surveillance and outbreak detection.
Eija Trees et al. J Microbiol Methods 2023 7 106784 -
A high fidelity approach to assembling the complex Borrelia genome.
Sabrina Hepner et al. BMC Genomics 2023 7 (1) 401 -
Feature weighted models to address lineage dependency in drug-resistance prediction from Mycobacterium tuberculosis genome sequences.
Nina Billows et al. Bioinformatics 2023 7 (7) -
Graph-Based Reconstruction and Analysis of Disease Transmission Networks Using Viral Genomic Data.
Ziqi Ke et al. J Comput Biol 2023 6 (7) 796-813
EVOLUTION / ECOLOGY / POPULATIONS
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Genomic epidemiology of Vibrio cholerae during a mass vaccination campaign of displaced communities in Bangladesh.
Alyce Taylor-Brown et al. Nat Commun 2023 6 (1) 3773 -
SARS-CoV-2 entry into and evolution within a skilled nursing facility.
Nicole R Sexton et al. Sci Rep 2023 7 (1) 11657 -
Genomic and geographical structure of human cytomegalovirus.
Oscar J Charles et al. Proc Natl Acad Sci U S A 2023 7 (30) e2221797120 -
Lassa Virus Genetics.
Raphaëlle Klitting et al. Curr Top Microbiol Immunol 2020 5 23-65 -
Integrating full and partial genome sequences to decipher the global spread of canine rabies virus.
Andrew Holtz et al. Nat Commun 2023 7 (1) 4247 -
EVIDENCE OF PROTOZOAN AND BACTERIAL INFECTION AND CO-INFECTION AND PARTIAL BLOOD FEEDING IN THE INVASIVE TICK HAEMAPHYSALIS LONGICORNIS IN PENNSYLVANIA.
Keith J Price et al. J Parasitol 2023 7 (4) 265-273
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
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The rare Salmonella enterica serovar Isangi: genomic characterization of the antimicrobial resistance, virulence potential and epidemiology of Brazilian strains in comparison to global isolates.
Felipe Pinheiro Vilela et al. J Med Microbiol 2023 7 (7) -
Combining Genome Surveillance and Metadata To Characterize the Diversity of Staphylococcus aureus Circulating in an Italian Hospital over a 9-Year Period.
U Postiglione et al. Microbiol Spectr 2023 7 e0101023 -
Antimicrobial susceptibilities and genomic epidemiology of Neisseria gonorrhoeae in Stockholm, Sweden.
Nora Vestberg et al. Eur J Clin Microbiol Infect Dis 2023 7 -
Antimicrobial Resistance Profiling and Genome Analysis of the penA-60.001 Neisseria gonorrhoeae Clinical Isolates in China in 2021.
Yingxian Tang et al. J Infect Dis 2023 7 -
Analysis of the N-glycosylation profiles of the spike proteins from the Alpha, Beta, Gamma, and Delta variants of SARS-CoV-2.
Dongxia Wang et al. Anal Bioanal Chem 2023 6 (19) 4779-4793
DETECTION / DIAGNOSIS
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Comparison of in silico predicted Mycobacterium tuberculosis spoligotypes and lineages from whole genome sequencing data.
Gary Napier et al. Sci Rep 2023 7 (1) 11368 -
Genomic analysis of Enterococcus faecium strain RAOG174 associated with acute chorioamnionitis carried antibiotic resistance gene: is it time for precise microbiological identification for appropriate antibiotic use?
Pisut Pongchaikul et al. BMC Genomics 2023 7 (1) 405 -
A mutation responsible for impaired detection by the Xpert SARS-CoV-2 assay independently emerged in different lineages during the SARS-CoV-2 pandemic.
Daniel Peñas-Utrilla et al. BMC Microbiol 2023 7 (1) 190 -
Analyzing community wastewater in sub-sewersheds for the small-scale detection of SARS-CoV-2 variants in a German metropolitan area.
Dennis Schmiege et al. Sci Total Environ 2023 7 165458 -
A collaborative approach to improving representation in viral genomic surveillance.
Paul Y Kim et al. PLOS Glob Public Health 2023 7 (7) e0001935 -
Emergence of zoonotic sporotrichosis due to Sporothrix brasiliensis in Minas Gerais, Brazil: A molecular approach to the current animal disease.
Salene Angelini Colombo et al. Mycoses 2023 7 -
Drug resistance profiling of asymptomatic and low-density Plasmodium falciparum malaria infections on Ngodhe island, Kenya, using custom dual-indexing next-generation sequencing.
Ashley Osborne et al. Sci Rep 2023 7 (1) 11416 -
Targeted amplicon deep sequencing of ama1 and mdr1 to track within-host P. falciparum diversity throughout treatment in a clinical drug trial.
Kevin Wamae et al. Wellcome Open Res 2023 7 95
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
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A urokinase-associated outbreak of Ralstonia mannitolilytica bloodstream infections in haemodialysis patients in north-eastern Italy, January to April 2023.
Massimiliano Fabricci et al. Euro Surveill 2023 7 (28) -
Implementation of routine genomic surveillance provided insights into a locally acquired outbreak caused by a rare clade of Salmonella enterica serovar Enteritidis in Queensland, Australia.
Irani U Rathnayake et al. Microb Genom 2023 7 (7) -
Molecular epidemiology and transmission dynamics of multi-drug resistant tuberculosis strains using whole genome sequencing in the Amhara region, Ethiopia.
Agumas Shibabaw et al. BMC Genomics 2023 7 (1) 400 -
Evidence for the transmission of antimicrobial resistant bacteria between humans and companion animals: A scoping review.
Mu Jin et al. One Health 2023 7 100593 -
SARS-CoV-2 in lions, gorillas and zookeepers in the Rotterdam Zoo, the Netherlands, a One Health investigation, November 2021.
Florien Dusseldorp et al. Euro Surveill 2023 7 (28) -
HIV-1 molecular transmission network and drug resistance in Chongqing, China, among men who have sex with men (2018-2021).
Tianyu Tan et al. Virol J 2023 7 (1) 147 -
An outbreak investigation of parechovirus-A3 in a newborn nursery.
Yuta Aizawa et al. Infect Control Hosp Epidemiol 2023 7 1-5 -
Donor-derived Transmission of Hepatitis A Virus Following Kidney Transplantation: Clinical Course of Two Cases From One Donor.
Jefferson M Jones et al. Transplant Direct 2023 7 (8) e1506 -
Population-level viremia predicts HIV incidence at the community level across the Universal Testing and Treatment Trials in eastern and southern Africa.
Joseph Larmarange et al. PLOS Glob Public Health 2023 7 (7) e0002157 -
Retrospective Evaluation of an Integrated Molecular-Epidemiological Approach to Cyclosporiasis Outbreak Investigations - United States, 2021.
Lauren Ahart et al. Epidemiol Infect 2023 7 1-25
HOST-MICROBE INTERACTIONS
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Metagenomic assessment of gut microbial communities and risk of severe COVID-19.
Long H Nguyen et al. Genome Med 2023 7 (1) 49 -
A common allele of HLA is associated with asymptomatic SARS-CoV-2 infection
Augusto DG, et al. Nature, Jul 19, 2023.
Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by Public Health Genomics Branch to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
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- Page last updated:May 2, 2024
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