Advanced Molecular Detection Clips Content (Published on 07/13/2023)
NEWS
-
New air monitor detects COVID-19 variants in 5 minutes
Soucheray S. CIDRAP, Jul 10, 2023. -
Bidirectional Spillover of SARS-CoV-2 Between Humans, White-Tailed Deer
GenomeWeb, Jul 11, 2023. -
Gene linked to long COVID found in analysis of thousands of patients
Ledford H. Nature, Jul 11, 2023. -
Global groups warn of ongoing H5N1 avian flu threat to people
Schnirring L. CIDRAP, Jul 11, 2023. -
Five more European countries report severe E-11 infections in newborns
Schnirring L. CIDRAP, Jul 10, 2023. -
Scientists used ChatGPT to generate an entire paper from scratch — but is it any good?
Conroy G. Nature, Jul 7, 2023.
POLICY
-
GAO’s New COVID-19 Report Highlights Recommendations Critical to Preparing for Future Public Health Emergencies
(news release), GAO, Jul 11, 2023.
CONCEPTS / COMMENTS
-
Artificial Intelligence in Molecular Medicine.
Bruna Gomes et al. N Engl J Med 2023 6 (26) 2456-2465 -
Sequence-based diagnostics and precision medicine in bacterial and viral infections: from bench to bedside.
Jonathan Pham et al. Curr Opin Infect Dis 2023 7 (4) 228-234
METHODS / TOOLS
-
An efficient method for high molecular weight bacterial DNA extraction suitable for shotgun metagenomics from skin swabs.
Iliana R Serghiou et al. Microb Genom 2023 7 (7) -
Tau-typing: a Nextflow pipeline for finding the best phylogenetic markers in the genome for molecular typing of microbial species.
Matthew H Seabolt et al. Bioinformatics 2023 7 -
VariantHunter: a method and tool for fast detection of emerging SARS-CoV-2 variants.
Pietro Pinoli et al. Database (Oxford) 2023 7 -
Accelerating bioinformatics implementation in public health.
Kevin G Libuit et al. Microb Genom 2023 7 (7)
EVOLUTION / ECOLOGY / POPULATIONS
-
Intensive care unit sinks are persistently colonized with multidrug resistant bacteria and mobilizable, resistance-conferring plasmids.
Luke Diorio-Toth et al. mSystems 2023 7 e0020623 -
Transmission of SARS-CoV-2 in free-ranging white-tailed deer in the United States.
Aijing Feng et al. Nat Commun 2023 7 (1) 4078 -
Molecular epidemiology of hepatitis C virus genotypes in different geographical regions of Chinese mainland and a phylogenetic analysis.
Qiao Tang et al. Infect Dis Poverty 2023 7 (1) 66 -
Molecular Diversity of Human Respiratory Syncytial Virus before and during the COVID-19 Pandemic in Two Neighboring Japanese Cities.
Takashi Ono et al. Microbiol Spectr 2023 7 e0260622 -
Whole genome sequencing and phylogenetic characterisation of rabies virus strains from Moldova and north-eastern Romania.
Mihaela Anca Dascalu et al. PLoS Negl Trop Dis 2023 7 (7) e0011446 -
Genomic epidemiology of human candidaemia isolates in a tertiary hospital.
Ka Lip Chew et al. Microb Genom 2023 7 (7)
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
-
Emergence of linezolid-resistant Enterococcus faecium in a tertiary hospital in Copenhagen.
Maria-Anna Misiakou et al. Microb Genom 2023 7 (7) -
Evidence of horizontal gene transfer within porB in 19 018 whole-genome Neisseria spp. isolates: a global phylogenetic analysis.
Sheeba Santhini Manoharan-Basil et al. Microb Genom 2023 6 (6) -
Outbreak of High-risk XDR CRAB of International Clone 2 (IC2) in Rio Janeiro, Brazil.
Sérgio M Morgado et al. J Glob Antimicrob Resist 2023 7 -
Nationwide, population-based observational study of the molecular epidemiology and temporal trend of carbapenemase-producing Enterobacterales in Norway, 2015 to 2021.
Oskar Ljungquist et al. Euro Surveill 2023 7 (27) -
From Farm to Fork: Persistence of Clinically Relevant Multidrug-Resistant and Copper-Tolerant Klebsiella pneumoniae Long after Colistin Withdrawal in Poultry Production.
Joana Mourão et al. Microbiol Spectr 2023 7 e0138623
DETECTION / DIAGNOSIS
-
Azithromycin for bacterial watery diarrhea: A reanalysis of the AntiBiotics for Children with severe Diarrhea (ABCD) trial incorporating molecular diagnostics.
Patricia B Pavlinac et al. J Infect Dis 2023 7 -
Metagenomic surveillance for bacterial tick-borne pathogens using nanopore adaptive sampling.
Evan J Kipp et al. Sci Rep 2023 7 (1) 10991 -
Distinct Origins and Transmission Pathways of bla Enterobacterales across Three U.S. States.
Zena Lapp et al. J Clin Microbiol 2023 7 (8) e0025923 -
PCR-Free Innovative Strategies for SARS-CoV-2 Detection.
Paolo Calorenni et al. Adv Healthc Mater 2023 7 e2300512 -
Monitoring SARS-CoV-2 variants in wastewater of Dhaka City, Bangladesh: approach to complement public health surveillance systems.
Rehnuma Haque et al. Hum Genomics 2023 7 (1) 58 -
Real-time environmental surveillance of SARS-CoV-2 aerosols.
Joseph V Puthussery et al. Nat Commun 2023 7 (1) 3692 -
Divergence of wastewater SARS-CoV-2 and reported laboratory-confirmed COVID-19 incident case data coincident with wide-spread availability of at-home COVID-19 antigen tests.
Alexandria B Boehm et al. PeerJ 2023 7 e15631 -
Metagenomic Surveillance of Viral Gastroenteritis in a Public Health Setting.
Dennis Schmitz et al. Microbiol Spectr 2023 7 e0502222 -
Molecular diagnosis of patients with hepatitis A virus infection using amplicon-based nanopore sequencing.
Geum-Young Lee et al. PLoS One 2023 7 (7) e0288361 -
Smartphone-readable RPA-LFA for the high-sensitivity detection of Leishmania kDNA using nanophosphor reporters.
Adheesha N Danthanarayana et al. PLoS Negl Trop Dis 2023 7 (7) e0011436 -
Humans as blood-feeding sources in sylvatic triatomines of Chile unveiled by next-generation sequencing.
Esteban San Juan et al. Parasit Vectors 2023 7 (1) 225
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
-
Local Salmonella Enteritidis restaurant outbreak investigation in England provides further evidence for eggs as source in widespread international cluster, March to April 2023.
Helen E Benson et al. Euro Surveill 2023 7 (27) -
Transmission and resistome of extremely drug-resistant tuberculosis in Beijing, China: A retrospective population-based epidemiological study.
Haiping Guo et al. J Infect Public Health 2023 6 (8) 1193-1200 -
Dispersal patterns and influence of air travel during the global expansion of SARS-CoV-2 variants of concern.
Houriiyah Tegally et al. Cell 2023 7 -
Notes from the Field: Doubling of Cyclosporiasis Cases Partially Attributable to a Salad Kit - Florida, 2021-2022.
Paul Rehme et al. MMWR Morb Mortal Wkly Rep 2023 7 (27) 751-752
HOST-MICROBE INTERACTIONS
-
Constructing a full, multiple-layer interactome for SARS-CoV-2 in the context of lung disease: Linking the virus with human genes and microbes.
Shaoke Lou et al. PLoS Comput Biol 2023 7 (7) e1011222 -
Genome-wide Association Study of Long COVID
Lammi V, et al. medRxiv, Jul 1, 2023. -
Anti-influenza A virus restriction factors that shape the human species barrier and virus evolution.
Philipp Peter Petric et al. PLoS Pathog 2023 7 (7) e1011450 -
Potential hidden Plasmodium vivax malaria reservoirs from low parasitemia Duffy-negative Ethiopians: Molecular evidence.
Abnet Abebe et al. PLoS Negl Trop Dis 2023 7 (7) e0011326
Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by Public Health Genomics Branch to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
- Page last reviewed:Feb 1, 2024
- Page last updated:Jan 9, 2025