Advanced Molecular Detection Clips Content (Published on 06/29/2023)
NEWS
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How to make your scientific data accessible, discoverable and useful
Perkel JM. Nature, Jun 27, 2023. -
Epic Sees First EHR-to-EHR Exchange of Structured Genomic Data
Versel N. GenomeWeb, Jun 28, 2023. -
Could chatbots help devise the next pandemic virus?
Service RF. Science, Jun 20, 2023. -
Trove of new coronaviruses uncovered in bats — but threat is unclear
Callaway E. Nature, Jun 27, 2023. -
New tool uncovers COVID-19 susceptibility mechanism
Wellcome Trust Sanger Institute, Medical Xpress, Jun 15, 2023. -
How a six-in-one vaccine could soon help the world get rid of polio for good
Branswell H. STAT, June 23, 2023.
CONCEPTS / COMMENTS
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Sharing Pathogen Genomic Sequence Data - Toward Effective Pandemic Prevention, Preparedness, and Response.
Sam Halabi et al. N Engl J Med 2023 6 -
Strengthening pathogen genomic surveillance for health emergencies: insights from the World Health Organization's regional initiatives.
Oluwatosin Wuraola Akande et al. Front Public Health 2023 6 1146730 -
Ten simple rules for the sharing of bacterial genotype-Phenotype data on antimicrobial resistance.
Leonid Chindelevitch et al. PLoS Comput Biol 2023 6 (6) e1011129 -
A Critical Opportunity to Improve Public Health Data.
David Blumenthal et al. N Engl J Med 2023 6
METHODS / TOOLS
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IRIDA-ARIES Genomics, a key player in the One Health surveillance of diseases caused by infectious agents in Italy.
Arnold Knijn et al. Front Public Health 2023 6 1151568 -
CoVigator-A Knowledge Base for Navigating SARS-CoV-2 Genomic Variants.
Thomas Bukur et al. Viruses 2023 6 (6) -
Assessing the Resilience of Machine Learning Classification Algorithms on SARS-CoV-2 Genome Sequences Generated with Long-Read Specific Errors.
Bikram Sahoo et al. Biomolecules 2023 6 (6)
EVOLUTION / ECOLOGY / POPULATIONS
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A local-scale One Health genomic surveillance of Clostridioides difficile demonstrates highly related strains from humans, canines, and the environment.
Charles H D Williamson et al. Microb Genom 2023 6 (6) -
Unique genomic sequences in a novel Mycobacterium avium subsp. hominissuis lineage enable fine scale transmission route tracing during pig movement.
Tetsuya Komatsu et al. One Health 2023 6 100559 -
Bacterial Communities Associated with Houseflies (Musca domestica L.) Inhabiting Hospices in South Africa.
Maropeng C Monyama et al. Microorganisms 2023 6 (6) -
Investigation of the Molecular Epidemiology and Evolution of Circulating Severe Acute Respiratory Syndrome Coronavirus 2 in Thailand from 2020 to 2022 via Next-Generation Sequencing.
Jiratchaya Puenpa et al. Viruses 2023 6 (6) -
Analyses of Early ZIKV Genomes Are Consistent with Viral Spread from Northeast Brazil to the Americas.
Laise de Moraes et al. Viruses 2023 6 (6) -
Long-Term Epidemiology and Evolution of Swine Influenza Viruses, Vietnam.
Jonathan Cheung et al. Emerg Infect Dis 2023 6 (7) 1397-1406 -
Large-scale phylogenetic analysis reveals genetic diversity and geographic distribution of rabies virus in South-East and South Asia.
Liang Zhang et al. Infect Genet Evol 2023 6 105472 -
Evolutionary Formation and Distribution of Puumala Virus Genome Variants, Russia.
Ekaterina Blinova et al. Emerg Infect Dis 2023 6 (7) 1420-1424 -
The Importance of Entomo-Virological Investigation of Yellow Fever Virus to Strengthen Surveillance in Brazil.
Ana Cecília Ribeiro Cruz et al. Trop Med Infect Dis 2023 6 (6) -
The Molecular Epidemiology of Clade 2.3.4.4B H5N1 High Pathogenicity Avian Influenza in Southern Africa, 2021-2022.
Celia Abolnik et al. Viruses 2023 6 (6) -
Diversification of Bourbon Virus in New York State.
Rachel E Lange et al. Microorganisms 2023 6 (6) -
The Global Spread Pattern of Rat Lungworm Based on Mitochondrial Genetics.
Xia Tian et al. Pathogens 2023 6 (6)
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
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Genomic Insights into Global bla-Positive Escherichia coli Epidemiology and Transmission Characteristics.
Jin-Tao Yang et al. Microbiol Spectr 2023 6 e0108923 -
Insight into pathogenomics and phylogeography of hypervirulent and highly-lethal Mycobacterium tuberculosis strain cluster.
Igor Mokrousov et al. BMC Infect Dis 2023 6 (1) 426 -
Genomic surveillance and antimicrobial resistance determinants in Neisseria gonorrhoeae isolates from Uganda, Malawi and South Africa, 2015-20.
Francis Kakooza et al. J Antimicrob Chemother 2023 6 -
Assessing phenotypic virulence of Salmonella enterica across serovars and sources.
Sara Petrin et al. Front Microbiol 2023 6 1184387 -
Comparison of invasive and non-invasive isolates of Neisseria meningitidis by whole genome sequencing, Czech Republic, 2005-2021.
M Honskus et al. Epidemiol Mikrobiol Imunol 2023 6 (2) 86-92 -
Comparative subgenomic mRNA profiles of SARS-CoV-2 Alpha, Delta and Omicron BA.1, BA.2 and BA.5 sub-lineages using Danish COVID-19 genomic surveillance data.
Man-Hung Eric Tang et al. EBioMedicine 2023 6 104669 -
Polymorphism analysis of drug resistance markers in Plasmodium falciparum isolates from Benin.
Mariangela L'Episcopia et al. Acta Trop 2023 6 106975
DETECTION / DIAGNOSIS
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Operationalising targeted next-generation sequencing for routine diagnosis of drug-resistant TB.
A Iyer et al. Public Health Action 2023 6 (2) 43-49 -
Trends in invasive Haemophilus influenzae serotype a disease in England from 2008-09 to 2021-22: a prospective national surveillance study.
Marta Bertran et al. Lancet Infect Dis 2023 6 -
Clostridioides difficile outbreak detection: Evaluation by ribotyping and whole-genome sequencing of a surveillance algorithm based on ward-specific cutoffs.
Jon E Edman-Wallér et al. Infect Control Hosp Epidemiol 2023 6 1-5 -
Use of a taxon-specific reference database for accurate metagenomics-based pathogen detection of Listeria monocytogenes in turkey deli meat and spinach.
Jillian Rumore et al. BMC Genomics 2023 6 (1) 361 -
A comparison of sampling and testing approaches for the surveillance of SARS-CoV-2 in farmed American mink.
Chelsea G Himsworth et al. J Vet Diagn Invest 2023 6 10406387231183685 -
Repurposing an integrated national influenza platform for genomic surveillance of SARS-CoV-2 in Ghana: a molecular epidemiological analysis.
Ivy Asantewaa Asante et al. Lancet Glob Health 2023 6 (7) e1075-e1085 -
Description of the first global outbreak of mpox: an analysis of global surveillance data.
Henry Laurenson-Schafer et al. Lancet Glob Health 2023 6 (7) e1012-e1023 -
Nationwide epidemiologic and genetic surveillance of hepatitis E in Japan, 2014-2021.
Ryuichi Sugiyama et al. J Med Virol 2023 6 (6) e28886 -
Detection of BK and JC polyomaviruses in sewage water of the urban areas of Lahore, Pakistan.
Rabia Ijaz et al. Biologia (Bratisl) 2023 6 1-8 -
Ticks and tick-borne microbes identified through passive and active surveillance in Alaska.
Micah B Hahn et al. J Med Entomol 2023 6
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
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Imported Cholera Cases, South Africa, 2023.
Anthony M Smith et al. Emerg Infect Dis 2023 6 (8) -
Whole strains vs MGEs in short and longterm transmission of ESBL genes between healthcare and community settings in Uganda.
Yaovi Mahuton Gildas Hounmanou et al. Sci Rep 2023 6 (1) 10229 -
Threat Net: A Metagenomic Surveillance Network for Biothreat Detection and Early Warning.
Siddhanth Sharma et al. Health Secur 2023 6 -
Comparison of Source Attribution Methodologies for Human Campylobacteriosis.
Maja Lykke Brinch et al. Pathogens 2023 6 (6) -
Reconstruction of SARS-CoV-2 outbreaks in a primary school using epidemiological and genomic data.
Cécile Kremer et al. Epidemics 2023 6 100701 -
Machine Learning Algorithms Associate Case Numbers with SARS-CoV-2 Variants Rather Than with Impactful Mutations.
Matthieu Vilain et al. Viruses 2023 6 (6) -
Notes from the Field: Emergence of an Mpox Cluster Primarily Affecting Persons Previously Vaccinated Against Mpox - Chicago, Illinois, March 18-June 12, 2023.
Emily A G Faherty et al. MMWR Morb Mortal Wkly Rep 2023 6 (25) 696-698 -
The epidemiology of HIV population viral load in twelve sub-Saharan African countries.
Wolfgang Hladik et al. PLoS One 2023 6 (6) e0275560 -
Modeling Drug Resistance Emergence and Transmission in HIV-1 in the UK.
Anna Zhukova et al. Viruses 2023 6 (6) -
Nationwide Outbreak of Candida auris Infections Driven by COVID-19 Hospitalizations, Israel, 2021-2022.
Roni Biran et al. Emerg Infect Dis 2023 6 (7) 1297-1301
ANTIMICROBIALS / VACCINES / INTERVENTIONS
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Progress in vaccine development for infectious diseases-a Keystone Symposia report.
Jennifer Cable et al. Ann N Y Acad Sci 2023 4 (1) 65-86 -
Evolutionary implications of SARS-CoV-2 vaccination for the future design of vaccination strategies.
Igor M Rouzine et al. Commun Med (Lond) 2023 6 (1) 86
Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by Public Health Genomics Branch to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
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- Page last updated:Apr 25, 2024
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