Advanced Molecular Detection Clips Content (Published on 06/21/2018)
UC Berkeley Team Develops Enzymatic DNA Synthesis Method
Karow J. GenomeWeb, Jun 19, 2018.
Novel Method Could Accelerate DNA Synthesis
Charuchandra S. The Scientist, Jun 19, 2018.
As suspected Ebola cases probed, new treatment shows promise
Schnirring L. CIDRAP, Jun 19, 2018.
A molecular warning system for invasive pneumococcus
Langelier C. Sci Transl Med, Jun 20, 2018.
UK Researchers Develop Rapid POC Test for Antibiotic-Related Hearing Loss
Gilmore J. GenomeWeb, Jun 19, 2018.
Common Ingredient in Toothpaste Is Accelerating Antibiotic Resistance Problem Worldwide
Georgiou A. Newsweek, Jun 20, 2018.
EVENTS / TRAINING / WEB RESOURCES
Important dbSNP updates: New JSON data files, RefSNP report, API
(announcement) NCBI, Jun 15, 2018.
Biodefense in the Age of Synthetic Biology
(report) NASEM, Jun 2018.
CONCEPTS / COMMENTS
METHODS / TOOLS
Taxonomy-aware feature engineering for microbiome classification.
Oudah Mai et al. BMC bioinformatics 2018 Jun (1) 227
SciApps: A cloud-based platform for reproducible bioinformatics workflows.
Wang Liya et al. Bioinformatics (Oxford, England) 2018 Jun
Variant site strain typer (VaST): efficient strain typing using a minimal number of variant genomic sites.
Furstenau Tara N et al. BMC bioinformatics 2018 Jun (1) 222
Cloud computing applications for biomedical science: A perspective.
Navale Vivek et al. PLoS computational biology 2018 Jun (6) e1006144
GenomeTrakr proficiency testing for foodborne pathogen surveillance: an exercise from 2015.
Timme Ruth E et al. Microbial genomics 2018 Jun
Inferring demographic parameters in bacterial genomic data using Bayesian and hybrid phylogenetic methods.
Duchene Sebastian et al. BMC evolutionary biology 2018 Jun (1) 95
The Microbial Genomes Atlas (MiGA) webserver: taxonomic and gene diversity analysis of Archaea and Bacteria at the whole genome level.
Rodriguez-R Luis M et al. Nucleic acids research 2018 Jun
De novo DNA synthesis using polymerase-nucleotide conjugates.
Palluk Sebastian et al. Nature biotechnology 2018 Jun
EVOLUTION / ECOLOGY / POPULATIONS
Genome variation and molecular epidemiology of Salmonella Typhimurium pathovariants.
Branchu Priscilla et al. Infection and immunity 2018 May
Microevolution and Patterns of Transmission of Shigella sonnei within Cyclic Outbreaks Shigellosis, Israel.
Behar Adi et al. Emerging infectious diseases 2018 Jul (7) 1335-1339
Long-read whole genome sequencing and comparative analysis of six strains of the human pathogen Orientia tsutsugamushi.
Batty Elizabeth M et al. PLoS neglected tropical diseases 2018 Jun (6) e0006566
Reemergence of Reston ebolavirus in Cynomolgus Monkeys, the Philippines, 2015.
Demetria Catalino et al. Emerging infectious diseases 2018 Jul (7) 1285-1291
Evolutionary analysis of rabies virus isolates from Guangxi Province of southern China.
Wei Xian-Kai et al. BMC veterinary research 2018 Jun (1) 188
Diversity of rotavirus strains circulating in children under five years of age who presented with acute gastroenteritis before and after rotavirus vaccine introduction, University Teaching Hospital, Lusaka, Zambia, 2008-2015.
Simwaka J C et al. Vaccine 2018 Jun
Single-virion sequencing of lamivudine-treated HBV populations reveal population evolution dynamics and demographic history.
Zhu Yuan O et al. BMC genomics 2017 Oct (1) 829
Comparative Genomic Analysis of Re-emergent Human Adenovirus Type 55 Pathogens Associated With Adult Severe Community-Acquired Pneumonia Reveals Conserved Genomes and Capsid Proteins.
Cheng Zetao et al. Frontiers in microbiology 2018 1180
Highly Pathogenic Avian Influenza A(H5N8) Virus, Cameroon, 2017.
Wade Abel et al. Emerging infectious diseases 2018 Jul (7) 1367-1370
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
Molecular characterization of nasal MRSA isolates showing increasing prevalence of mupirocin resistance and associated multi-drug resistance following attempted decolonization.
Poovelikunnel Toney T et al. Antimicrobial agents and chemotherapy 2018 Jun
Non-antibiotic antimicrobial triclosan induces multiple antibiotic resistance through genetic mutation.
Lu Ji et al. Environment international 2018 Jun 257-265
DETECTION / DIAGNOSIS
Diagnosis of Human Leptospirosis in a Clinical Setting: Real-Time PCR High Resolution Melting Analysis for Detection of Leptospira at the Onset of Disease.
Esteves Lisa M et al. Scientific reports 2018 Jun (1) 9213
Sensitivity of single-molecule array assays to detect Clostridium difficile toxins in comparison to conventional laboratory testing algorithms.
Banz Alice et al. Journal of clinical microbiology 2018 Jun
Travelers' Diarrhea in Thailand: A Quantitative Analysis Using TaqMan® Array Card.
Lertsethtakarn Paphavee et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2018 Jun (1) 120-127
Challenges in the identification of methicillin-resistant Staphylococcus argenteus by routine diagnostics.
Tunsjø Hege Smith et al. APMIS : acta pathologica, microbiologica, et immunologica Scandinavica 2018 Jun (6) 533-537
In situ loop-mediated isothermal amplification (LAMP) for identification of Plasmodium species in wide-range thin blood smears.
Hashimoto Muneaki et al. Malaria journal 2018 Jun (1) 235
Cryptosporidium genotyping in Europe: The current status and processes for a harmonised multi-locus genotyping scheme.
Chalmers Rachel M et al. Experimental parasitology 2018 Jun
Molecular Diagnosis of Visceral Leishmaniasis.
Sundar Shyam et al. Molecular diagnosis & therapy 2018 Jun
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
Geographically Diverse Clusters of Nontoxigenic Corynebacterium diphtheriae Infection, Germany, 2016-2017.
Dangel Alexandra et al. Emerging infectious diseases 2018 Jul (7) 1239-1245
Serratia marcescens outbreak in a neonatal intensive care unit (NICU): new insights from next-generation sequencing applications.
Martineau Christine et al. Journal of clinical microbiology 2018 Jun
Molecular characterization of a nosocomial outbreak of influenza B virus in an acute-care hospital setting.
Sansone Martina et al. The Journal of hospital infection 2018 Jun
An unusual outbreak of rotavirus G8P gastroenteritis in adults in an urban community, Singapore, 2016.
Chia Gabriel et al. Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology 2018 Jun 57-63
Multilocus genotype analysis outlines distinct histories for Trichinella britovi in the neighboring Mediterranean islands of Corsica and Sardinia.
La Rosa Giuseppe et al. Parasites & vectors 2018 Jun (1) 353
ANTIMICROBIALS / VACCINES / INTERVENTIONS
Outcomes of resistance-guided sequential treatment of Mycoplasma genitalium infections: a prospective evaluation.
Read T R H et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2018 Jun
CRISPR-Cas antimicrobials: Challenges and future prospects.
Pursey Elizabeth et al. PLoS pathogens 2018 Jun (6) e1006990
The influence of the intestinal microbiome on vaccine responses.
Zimmermann Petra et al. Vaccine 2018 Jun
Anti-tick vaccines in the omics era.
Valle Manuel Rodriguez et al. Frontiers in bioscience (Elite edition) 2018 Jan 122-136
Strategic Response to an Outbreak of Circulating Vaccine-Derived Poliovirus Type 2 Syria, 20172018
Mbaeyi C, et al. MMWR, Jun 22, 2018.
Probiotic strains detect and suppress cholera in mice.
Mao Ning et al. Science translational medicine 2018 Jun (445)
Clinical implications of systematic phenotyping and exome sequencing in patients with primary antibody deficiency.
Abolhassani Hassan et al. Genetics in medicine : official journal of the American College of Medical Genetics 2018 Jun
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