Advanced Molecular Detection Clips Content (Published on 04/18/2024)
NEWS
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White House releases new global health security strategy
Schnirring L. CIDRAP, Apr 17, 2024. -
Novel Chlamydia Vaccine Shows Promise in Early Trial
Haelle T. MedPage Today, Apr 16, 2024. -
Race for the next generation of Covid-19 vaccines: What’s in the pipeline?
(blog post) Jetelina K, Amayo A. Your Local Epidemiologist, Apr 16, 2024. -
Only One Harm From mRNA COVID Vaccines, Report Determines
Lou N. MedPage Today, Apr 16, 2024. -
The Checkup With Dr. Wen: How covid-19 might have improved public health infrastructure
Wen LS. Washington Post, Apr 11, 2024. -
New mpox clade 1 lineage identified in DR Congo outbreak
Schnirring L. CIDRAP, Apr 17, 2024. -
Viruses Finally Reveal Their Complex Social Life
Zimmer C. Quanta, Apr 11, 2024.
EVENTS / TRAINING / WEB RESOURCES
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Evidence Review of the Adverse Effects of COVID-19 Vaccination and Intramuscular Vaccine Administration
(report) NASEM, Apr 2024.
CONCEPTS / COMMENTS
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Surveillance for Emerging and Reemerging Pathogens Using Pathogen Agnostic Metagenomic Sequencing in the United States: A Critical Role for Federal Government Agencies.
Diane L Downie et al. Health Secur 2024 4 -
Integrating Public Health and Health Care - Protecting Health as a Team Sport.
Charlene A Wong et al. N Engl J Med 2024 4 -
Assessment of sewer connectivity in the United States and its implications for equity in wastewater-based epidemiology.
QinQin Yu et al. PLOS Glob Public Health 2024 4 (4) e0003039 -
Monitoring pathogens in wastewater.
Arin Wongprommoon et al. Nat Rev Microbiol 2024 2 (5) 261
METHODS / TOOLS
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Deep learning methods in metagenomics: a review.
Gaspar Roy et al. Microb Genom 2024 4 (4) -
Benchmarking bioinformatic virus identification tools using real-world metagenomic data across biomes.
Ling-Yi Wu et al. Genome Biol 2024 4 (1) 97 -
Optimisation and evaluation of viral genomic sequencing of SARS-CoV-2 rapid diagnostic tests: a laboratory and cohort-based study.
Jillian S Paull et al. Lancet Microbe 2024 4 -
Computational methods in the analysis of SARS-CoV-2 in mammals: A systematic review of the literature.
Paula Vitória Silva et al. Comput Biol Med 2024 4 108264 -
An Efficient Extraction Method Allowing the Genetic Evaluation of Host DNA from Samples Collected for Virus Infection Diagnosis in Viral Transport Medium.
Renan C Sbruzzi et al. Biopreserv Biobank 2023 8 (2) 166-173
EVOLUTION / ECOLOGY / POPULATIONS
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Positive selection underlies repeated knockout of ORF8 in SARS-CoV-2 evolution.
Cassia Wagner et al. Nat Commun 2024 4 (1) 3207 -
Lineage frequency time series reveal elevated levels of genetic drift in SARS-CoV-2 transmission in England.
QinQin Yu et al. PLoS Pathog 2024 4 (4) e1012090 -
Recombination analysis on the receptor switching event of MERS-CoV and its close relatives: implications for the emergence of MERS-CoV.
Jarel Elgin Tolentino et al. Virol J 2024 4 (1) 84 -
Co-Circulating Monkeypox and Swinepox Viruses, Democratic Republic of the Congo, 2022.
Thierry Kalonji et al. Emerg Infect Dis 2024 3 (4) 761-765 -
Crimean-Congo Hemorrhagic Fever Virus Diversity and Reassortment, Pakistan, 2017-2020.
Massab Umair et al. Emerg Infect Dis 2024 3 (4) 654-664 -
Water-Based Epidemiological Investigation of Hepatitis E Virus in South Africa.
Karabo Salemane et al. Food Environ Virol 2024 4 -
Patterns recovered in phylogenomic analysis of Candida auris and close relatives implicate broad environmental flexibility in Candida/Clavispora clade yeasts.
Kyle Schutz et al. Microb Genom 2024 4 (4)
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
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Recombinational exchange of M-fibril and T-pilus genes generates extensive cell surface diversity in the global group A Streptococcus population.
Debra E Bessen et al. mBio 2024 4 e0069324 -
Genomic characterization of ST38 NDM-5-producing Escherichia coli isolates from an outbreak in the Czech Republic.
Katerina Chudejova et al. Antimicrob Agents Chemother 2024 4 e0013324 -
Antimicrobial-resistant Neisseria gonorrhoeae in Europe in 2020 compared with in 2013 and 2018: a retrospective genomic surveillance study.
Daniel Golparian et al. Lancet Microbe 2024 4 -
Epidemiology, resistance genomics and susceptibility of Acinetobacter species: results from the 2020 Spanish nationwide surveillance study.
Cristina Lasarte-Monterrubio et al. Euro Surveill 2024 4 (15) -
Klebsiella pneumoniae sequence type 147: a high-risk clone increasingly associated with plasmids carrying both resistance and virulence elements.
Jane F Turton et al. J Med Microbiol 2024 4 (4) -
Acute Hepatitis due to Primary Human Immunodeficiency Virus Infection.
Eric I Elliott et al. Open Forum Infect Dis 2024 4 (4) ofae170 -
Plasmodium falciparum pfhrp2 and pfhrp3 gene deletions among patients enrolled at 100 health facilities throughout Tanzania: February to July 2021.
Eric Rogier et al. Sci Rep 2024 4 (1) 8158 -
Transcriptomic analysis of Anopheles gambiae from Benin reveals overexpression of salivary and cuticular proteins associated with cross-resistance to pyrethroids and organophosphates.
Helga Saizonou et al. BMC Genomics 2024 4 (1) 348 -
Signatures of adaptation at key insecticide resistance loci in Anopheles gambiae in Southern Ghana revealed by reduced-coverage WGS.
Tristan P W Dennis et al. Sci Rep 2024 4 (1) 8650
DETECTION / DIAGNOSIS
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Rescue of Mycobacterium bovis DNA Obtained from Cultured Samples during Official Surveillance of Animal TB: Key Steps for Robust Whole Genome Sequence Data Generation.
Daniela Pinto et al. Int J Mol Sci 2024 4 (7) -
National genomic epidemiology investigation revealed the spread of carbapenem-resistant Escherichia coli in healthy populations and the impact on public health.
Yan Li et al. Genome Med 2024 4 (1) 57 -
Small-scale wastewater-based epidemiology (WBE) for infectious diseases and antibiotic resistance: A scoping review.
Dennis Schmiege et al. Int J Hyg Environ Health 2024 4 114379 -
Highly Multiplexed Reverse-Transcription Loop-Mediated Isothermal Amplification and Nanopore Sequencing (LAMPore) for Wastewater-Based Surveillance.
Seju Kang et al. ACS ES T Water 2024 4 (4) 1629-1636 -
Antimicrobial Resistance Analysis and Whole-Genome Sequencing of Salmonella Isolates from Environmental Sewage - Guangzhou City, Guangdong Province, China, 2022-2023.
Bihui Su et al. China CDC Wkly 2024 4 (13) 254-260 -
Surveillance To Track Progress Toward Polio Eradication - Worldwide, 2022-2023.
Nishant Kishore et al. MMWR Morb Mortal Wkly Rep 2024 4 (13) 278-285 -
Rapid detection of monkeypox virus and differentiation of West African and Congo Basin strains using endonuclease restriction-mediated real-time PCR-based testing.
Juan Zhou et al. Anal Methods 2024 4 -
A Validated In-House Assay for HIV Drug Resistance Mutation Surveillance from Dried Blood Spot Specimens.
Bronwyn Neufeld et al. J Virol Methods 2024 4 114939 -
Ticks - public health risks in urban green spaces.
Thérese Janzén et al. BMC Public Health 2024 4 (1) 1031
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
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Outbreak of Invasive Serratia marcescens among Persons Incarcerated in a State Prison, California, USA, March 2020-December 2022.
Amanda Kamali et al. Emerg Infect Dis 2024 4 (13) S41-S48 -
Evaluating the impact of genomic epidemiology of methicillin-resistant Staphylococcus aureus (MRSA) on hospital infection prevention and control decisions.
Beth Blane et al. Microb Genom 2024 4 (4) -
Concurrent Outbreaks of Hepatitis A, Invasive Meningococcal Disease, and Mpox, Florida, USA, 2021-2022.
Timothy J Doyle et al. Emerg Infect Dis 2024 3 (4) 633-43 -
Case of Human Orthohantavirus Infection, Michigan, USA, 2021.
Samuel M Goodfellow et al. Emerg Infect Dis 2024 3 (4) 817-821 -
Real-time investigation of an influenza A(H3N2) virus outbreak in a refugee community, November 2022.
C Galli et al. Public Health 2024 3 157-162
ANTIMICROBIALS / VACCINES / INTERVENTIONS
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Self-amplifying RNA COVID-19 vaccine.
Christopher J Wayne et al. Cell 2024 4 (8) 1822-1822.e1
HOST-MICROBE INTERACTIONS
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Next-generation sequencing of host genetics risk factors associated with COVID-19 severity and long-COVID in Colombian population.
Mariana Angulo-Aguado et al. Sci Rep 2024 4 (1) 8497 -
Host-microbe multiomic profiling reveals age-dependent immune dysregulation associated with COVID-19 immunopathology.
Hoang Van Phan et al. Sci Transl Med 2024 4 (743) eadj5154 -
The host transcriptional response to superinfection by influenza A virus and Streptococcus pneumoniae.
Ofir Cohn et al. mSystems 2024 3 (4) e0104823 -
Characterization of the brain virome in human immunodeficiency virus infection and substance use disorder.
Xin Dang et al. PLoS One 2024 4 (4) e0299891
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Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by Public Health Genomics Branch to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
- Page last reviewed:Feb 1, 2024
- Page last updated:Jan 9, 2025