Advanced Molecular Detection Clips Content (Published on 03/28/2024)
NEWS
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National Academies Report Amplifies Call to Develop Direct RNA Sequencing Technology
Han AP. GenomeWeb, Mar 21, 2024. -
The future of at-home molecular testing
Dolgin E. Nature, Mar 21, 2024. -
How do we halt the next pandemic? Be kind to critters like bats, says a new paper
Daniel A. NPR, Mar 26, 2024. -
Dairy cattle in Texas and Kansas test positive for bird flu
Stobbe M, Aleccia J. Mar 26, 2024. -
What’s Next for the Coronavirus?
Mandavilli A. New York Times, Mar 21, 2024. -
Covid’s scientific silver lining: A chance to watch the human immune system respond in real time
Branswell H. STAT, Mar 28, 2024. -
A new type of bacteria was found in 50% of colon cancers. Many were aggressive cases.
Sullivan K. NBC, Mar 20, 2024.
EVENTS / TRAINING / WEB RESOURCES
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Evidence-based Decision Making: Infectious Disease Modeling Training for Policymakers in East Africa.
Sylvia K Ofori et al. Ann Glob Health 2024 3 (1) 22 -
Charting a Future for Sequencing RNA and Its Modifications
(report) NASEM, Mar 2024. -
2024 Canadian Bioinformatics Workshops
bioinformatics.ca,
POLICY
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The DTC microbiome testing industry needs more regulation.
Diane E Hoffmann et al. Science 2024 3 (6688) 1176-1179
CONCEPTS / COMMENTS
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Editorial: Zoonotic bacteria: genomic evolution, antimicrobial resistance, pathogenicity, and prevention strategies.
Abdelaziz Ed-Dra et al. Front Vet Sci 2024 3 1390732 -
Lessons from the pandemic: new best practices in selecting molecular diagnostics for point-of-care testing of infectious diseases in sub-Saharan Africa.
Mamadu Baldeh et al. Expert Rev Mol Diagn 2023 11 (3) 153-159 -
Ecological countermeasures to prevent pathogen spillover and subsequent pandemics
Plowright RK, et al. Nat Commun 2024; 15:2577
METHODS / TOOLS
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Comparative assessment of Nanotrap and polyethylene glycol-based virus concentration in wastewater samples.
Kata Farkas et al. FEMS Microbes 2024 3 xtae007 -
ReporType: A Flexible Bioinformatics Tool for Targeted Loci Screening and Typing of Infectious Agents.
Helena Cruz et al. Int J Mol Sci 2024 3 (6) -
Recommendations for Uniform Variant Calling of SARS-CoV-2 Genome Sequence across Bioinformatic Workflows.
Ryan Connor et al. Viruses 2024 3 (3) -
Automated detection and classification of polioviruses from nanopore sequencing reads using piranha.
Áine O'Toole et al. Virus Evol 2024 3 (1) veae023
EVOLUTION / ECOLOGY / POPULATIONS
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Emergence and clonal expansion of a qacA-harbouring sequence type 45 lineage of methicillin-resistant Staphylococcus aureus.
Yi Nong et al. Commun Biol 2024 3 (1) 349 -
Streptococcus pneumoniae serotype 3 population structure in the era of conjugate vaccines, 2001-2018.
Eleonora Cella et al. Microb Genom 2024 3 (3) -
A comprehensive analysis of SARS-CoV-2 missense mutations indicates that all possible amino acid replacements in the viral proteins occurred within the first two-and-a-half years of the pandemic.
Nicole Balasco et al. Int J Biol Macromol 2024 3 131054 -
Exploration of low-frequency allelic variants of SARS-CoV-2 genomes reveals coinfections in Mexico occurred during periods of VOCs turnover.
Rodrigo García-López et al. Microb Genom 2024 3 (3) -
Phylogenetic Characterization of Orthohantavirus dobravaense (Dobrava Virus).
Mert Erdin et al. Emerg Infect Dis 2024 3 (4) 779-782 -
Cutaneous Leishmania mexicana infections in the United States: defining strains through endemic human pediatric cases in northern Texas.
Binita Nepal et al. mSphere 2024 2 (3) e0081423
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
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Inter-species gene flow drives ongoing evolution of Streptococcus pyogenes and Streptococcus dysgalactiae subsp. equisimilis.
Ouli Xie et al. Nat Commun 2024 3 (1) 2286 -
Drug-resistant tuberculosis: a persistent global health concern.
Maha Farhat et al. Nat Rev Microbiol 2024 3 -
Overexpression and nonsynonymous mutations of UDP-glycosyltransferases are potentially associated with pyrethroid resistance in Anopheles funestus.
Talal Al-Yazeedi et al. Genomics 2024 1 (2) 110798 -
Uncommon Salmonella Infantis Variants with Incomplete Antigenic Formula in the Poultry Food Chain, Italy.
Sara Petrin et al. Emerg Infect Dis 2024 3 (4) 795-799 -
Prediction of pyrazinamide resistance in Mycobacterium tuberculosis using structure-based machine-learning approaches.
Joshua J Carter et al. JAC Antimicrob Resist 2024 3 (2) dlae037 -
HIV-1 Incidence, Adherence, and Drug Resistance in Individuals Taking Daily Emtricitabine/Tenofovir Disoproxil Fumarate for HIV-1 Pre-Exposure Prophylaxis: Pooled Analysis From 72 Global Studies.
Raphael J Landovitz et al. Clin Infect Dis 2024 3 -
The frequency of kdr and ace-1 alleles in Anopheles gambiae s.l. before and during indoor residual spraying (IRS) implementation and four years after IRS withdrawal in three districts in Atacora, Benin.
Esdras Mahoutin Odjo et al. Parasit Vectors 2024 3 (1) 115
DETECTION / DIAGNOSIS
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Tailored wastewater surveillance framework uncovered the epidemics of key pathogens in a Northwestern city of China.
Haifeng Li et al. Sci Total Environ 2024 3 171833 -
Characteristic SNPs defining the major multidrug-resistant Mycobacterium tuberculosis clusters identified by EuSeqMyTB to support routine surveillance, EU/EEA, 2017 to 2019.
Albert J de Neeling et al. Euro Surveill 2024 3 (12) -
A novel hybridization capture method for direct whole genome sequencing of clinical specimens to inform Legionnaires' disease investigations.
Phillip Weeber et al. J Clin Microbiol 2024 3 e0130523 -
Methicillin-resistant Staphylococcus aureus (MRSA) clusters in neonatal intensive care units (NICUs) and other neonatal units in New York State (NYS), 2001 to 2017.
Karen L Southwick et al. Am J Infect Control 2023 10 (4) 424-435 -
Target enrichment improves culture-independent detection of Neisseria gonorrhoeae and antimicrobial resistance determinants direct from clinical samples with Nanopore sequencing.
Teresa L Street et al. Microb Genom 2024 3 (3) -
Real-Time On-Site Monitoring of Viruses in Wastewater Using Nanotrap Particles and RICCA Technologies.
Vishnu Sharma et al. Biosensors (Basel) 2024 3 (3) -
Evaluation of 5 Polymerase Chain Reaction Assays for the Detection of Mpox Virus.
Ramzi Fattouh et al. J Infect Dis 2024 3 (Supplement_2) S156-S162 -
Detection of Mpox Virus Using Microbial Cell-Free DNA: The Potential of Pathogen-Agnostic Sequencing for Rapid Identification of Emerging Pathogens.
Sarah Y Park et al. J Infect Dis 2023 10 (Supplement_2) S144-S155 -
Rapid identification of A29L antibodies based on mRNA immunization and high-throughput single B cell sequencing to detect Monkeypox virus.
Huisheng Sun et al. Emerg Microbes Infect 2024 3 2332665
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
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Animal vaccine strain Brucella abortus infection in a plateletpheresis donor: A case report.
Meredith G Parsons et al. Transfusion 2024 3 -
Multidrug-resistant Mycobacterium tuberculosis transmission in Shandong, China.
Yingying Li et al. Medicine (Baltimore) 2024 3 (12) e37617 -
Bus Riding as Amplification Mechanism for SARS-CoV-2 Transmission, Germany, 2021.
Meike Schöll et al. Emerg Infect Dis 2024 3 (4) 711-720 -
Local-scale phylodynamics reveal differential community impact of SARS-CoV-2 in a metropolitan US county.
Miguel I Paredes et al. PLoS Pathog 2024 3 (3) e1012117 -
Clinico-epidemiological presentations and management of Nipah virus infection during the outbreak in Kozhikode district, Kerala state, India 2023.
Anoop Kumar As et al. J Med Virol 2024 3 (3) e29559 -
Molecular and phylogenetic characterization of the monkeypox outbreak in the South of Spain.
Carlos S Casimiro-Soriguer et al. Health Sci Rep 2024 3 (3) e1965
ANTIMICROBIALS / VACCINES / INTERVENTIONS
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Risk of COVID-19 Hospitalization and Protection Associated With mRNA Vaccination Among US Adults With Psychiatric Disorders.
Matthew E Levy et al. Influenza Other Respir Viruses 2024 3 (3) e13269 -
mRNA vaccines encoding computationally optimized hemagglutinin elicit protective antibodies against future antigenically drifted H1N1 and H3N2 influenza viruses isolated between 2018-2020.
James D Allen et al. Front Immunol 2024 3 1334670
HOST-MICROBE INTERACTIONS
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Canadian COVID-19 host genetics cohort replicates known severity associations.
Elika Garg et al. PLoS Genet 2024 3 (3) e1011192 -
Bulk RNA sequencing for analysis of post COVID-19 condition in adolescents and young adults.
Silke Lauren Sommen et al. J Transl Med 2024 3 (1) 312 -
The evolutionary drivers and correlates of viral host jumps.
Cedric C S Tan et al. Nat Ecol Evol 2024 3 -
Prokaryotic and eukaryotic skin microbiota modifications triggered by Leishmania infection in localized Cutaneous Leishmaniasis.
Jesús Jaimes et al. PLoS Negl Trop Dis 2024 3 (3) e0012029 -
Integration of polygenic and gut metagenomic risk prediction for common diseases.
Yang Liu et al. Nat Aging 2024 3 -
A distinct Fusobacterium nucleatum clade dominates the colorectal cancer niche.
Martha Zepeda-Rivera et al. Nature 2024 3
Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by Public Health Genomics Branch to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
- Page last reviewed:Feb 1, 2024
- Page last updated:May 2, 2024
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