Advanced Molecular Detection Clips Content (Published on 02/16/2017)
NEWS
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The New, Expanded Genetic Alphabet Rewrites Life
Tayag Y. Inverse Science, Feb 7, 2017. -
Why Killer Viruses Are On The Rise
Doucleff M. NPR, Feb 14, 2017. -
Disease superspreaders accounted for nearly two-thirds of Ebola cases, study finds
Sun LH. Washington Post, Feb 14, 2017. -
Ebola viruses need very few mutations to cause disease in new host species
Science, February 15, 2017 -
China now in its worst H7N9 avian flu season on record
Schnirring L. CIDRAP, Feb 10, 2017. -
Malaria Research to Benefit From Selective Amplification for Sequencing Tricky-to-Culture Parasite
Anderson A. GenomeWeb, Feb 10, 2017. -
Mystery nodding syndrome may be triggered by parasitic worm
Vogel G. Science, Feb 15, 2017. -
Premature birth may be linked to mother's cervicovaginal bacteria
Healio, Feb 14, 2017.
EVENTS / TRAINING / WEB RESOURCES
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Analysis of recent scientific information on avian influenza A(H7N9) virus
(update) WHO, Feb 10, 2017. -
Relational TB Sequencing Data Platform (ReSeq TB)
(database) Bill & Melinda Gates Foundation (BMGF), Critical Path Institute (C-Path), Foundation for Innovative New Diagnostics (FIND), World Health Organization (WHO), US Centers for Disease Control and Prevention (CDC), New Diagnostics Working Group (NDWG), and the National Institute of Allergy and Infectious Diseases (NIAID).
POLICY
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New Vaccines against Epidemic Infectious Diseases.
Røttingen John-Arne et al. The New England journal of medicine 2017 Feb (7) 610-613
CONCEPTS / COMMENTS
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Finding the needle in the haystack
Rutledge GG, Ariani CV. Nat Rev Microbiol, Feb 13, 2017. -
Diversity without Limits: New Insights from the Most Comprehensive Tree of Prokaryotic Life Assembled To Date.
Caspermeyer Joseph et al. Molecular biology and evolution 2017 Jan -
Clinical and biological insights from viral genome sequencing.
Houldcroft Charlotte J et al. Nature reviews. Microbiology 2017 Mar (3) 183-192 -
A sea change for virology
(editorial) Nat Rev Microbiol, Feb 13, 2017. -
Calling upon all public health mycologists : To accompany the country burden papers from 14 countries.
Denning D W et al. European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology 2017 Feb -
Hostpathogen duels revealed by dual RNA-seq in vivo
Burgess DJ. Nat Rev Genet, Feb 15, 2017. -
'Kill Them All' Not Always Best Approach to Drug Resistance
Upham B. MedPage Today, Feb 9, 2017.
METHODS / TOOLS
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The Reliability and Stability of an Inferred Phylogenetic Tree from Empirical Data.
Katsura Yukako et al. Molecular biology and evolution 2017 Jan -
Origins and Challenges of Viral Dark Matter.
Krishnamurthy Siddharth R et al. Virus research 2017 Feb -
Sequencing of Ebola Virus Genomes Using Nanopore Technology.
Hoenen Thomas et al. Bio-protocol 2016 Nov (21) -
Bayesian phylogeography of influenza A/H3N2 for the 2014-15 season in the United States using three frameworks of ancestral state reconstruction.
Magee Daniel et al. PLoS computational biology 2017 Feb (2) e1005389 -
Online Databases for the Taxonomy and Identification of Pathogenic Fungi and Proposal for a Cloud-based Dynamic Data Network Platform.
Prakash Peralam Yegneswaran et al. Journal of clinical microbiology 2017 Feb -
If it transcribes, we can sequence it: mining the complexities of host-pathogen-environment interactions using RNA-seq.
Colgan Aoife M et al. Current opinion in microbiology 2017 Feb 37-46 -
Bringing the Dynamic Microbiome to Life with Animations.
Vázquez-Baeza Yoshiki et al. Cell host & microbe 2017 Jan (1) 7-10 -
Seq-Well: portable, low-cost RNA sequencing of single cells at high throughput.
Gierahn Todd M et al. Nature methods 2017 Feb -
Immune recognition surface construction of Mycobacterium tuberculosis epitope-specific antibody responses in tuberculosis patients identified by peptide microarrays.
Valentini Davide et al. International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases 2017 Feb
EVOLUTION / ECOLOGY / POPULATIONS
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The effective rate of influenza reassortment is limited during human infection.
Sobel Leonard Ashley et al. PLoS pathogens 2017 Feb (2) e1006203 -
Genesis and Dissemination of Highly Pathogenic H5N6 Avian Influenza Viruses.
Yang Lei et al. Journal of virology 2017 Mar (5) -
ENDEMIC INFECTION OF STRANDED SOUTHERN SEA OTTERS (ENHYDRA LUTRIS NEREIS) WITH NOVEL PARVOVIRUS, POLYOMAVIRUS, AND ADENOVIRUS.
Juliana D Siqueira et al. J Wildl Dis 2017 2 (3) 532-542
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Comparative analysis estimates the relative frequencies of co-divergence and cross-species transmission within viral families.
Geoghegan Jemma L et al. PLoS pathogens 2017 Feb (2) e1006215 -
On the Analysis of Intrahost and Interhost Viral Populations: Human Cytomegalovirus as a Case Study of Pitfalls and Expectations.
Renzette Nicholas et al. Journal of virology 2017 Mar (5) -
Viruses comprise an extensive pool of mobile genetic elements in eukaryote cell cultures and human clinical samples.
Thannesberger Jakob et al. FASEB journal : official publication of the Federation of American Societies for Experimental Biology 2017 Feb -
Hepatitis E Virus and Related Viruses in Animals.
Thiry D et al. Transboundary and emerging diseases 2017 Feb (1) 37-52 -
First Full Draft Genome Sequence of Plasmodium brasilianum.
Talundzic Eldin et al. Genome announcements 2017 Feb (6)
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Comparative genomic analysis of the IId subtype family of Cryptosporidium parvum.
Feng Yaoyu et al. International journal for parasitology 2017 Feb
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
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Antibiotic tolerance facilitates the evolution of resistance.
Levin-Reisman Irit et al. Science (New York, N.Y.) 2017 Feb -
Whole genome sequencing of a large panel of contemporary Neisseria gonorrhoeae clinical isolates indicates that a wild-type mtrA gene is common: implications for inducible antimicrobial resistance.
Vidyaprakash Eshaw et al. Antimicrobial agents and chemotherapy 2017 Feb
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Changes associated with Ebola virus adaptation to novel species
Pappalardo M, et al. Bionformatics, Feb 15, 2017. -
Mechanisms of pathogenesis of emerging adenoviruses.
Cook James et al. F1000Research 2017 90 -
Antimicrobial resistance at the interface of human and veterinary medicine
Kock R, et al. Vet Microbiol, 2017; 200:1-5.
DETECTION / DIAGNOSIS
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Can MALDI-TOF Mass Spectrometry Reasonably Type Bacteria?
Sauget Marlène et al. Trends in microbiology 2017 Jan -
Improvement of infection control management by routine molecular evaluation of pathogen clusters.
Mutters Nico T et al. Diagnostic microbiology and infectious disease 2017 Jan
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Untargeted next-generation sequencing-based first-line diagnosis of infection in immunocompromised adults: a multicentre, blinded, prospective study.
Parize Perrine et al. Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases 2017 Feb -
Metagenomic Sequencing for Surveillance of Food- and Waterborne Viral Diseases
Nieuwenhuijse DF, Koopmans MPG. Front Microbiol, Feb 15, 2017. -
Unbiased Identification of Blood-based Biomarkers for Pulmonary Tuberculosis by Modeling and Mining Molecular Interaction Networks.
Sambarey Awanti et al. EBioMedicine 2017 Feb 112-126 -
Relative analytical sensitivity of donor nucleic acid amplification technology screening and diagnostic real-time polymerase chain reaction assays for detection of Zika virus RNA.
Stone Mars et al. Transfusion 2017 Feb
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Simple and Highly Sensitive Molecular Diagnosis of Zika Virus by Lateral Flow Assays.
Lee Dohwan et al. Analytical chemistry 2016 Dec (24) 12272-12278 -
The evolving landscape of HIV drug resistance diagnostics for expanding testing in resource-limited settings.
Inzaule Seth C et al. AIDS reviews 2017 Feb (2) -
Real-time PCR strategy for the identification of Trypanosoma cruzi discrete typing units directly in chronically infected human blood.
Muñoz-San Martín Catalina et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2017 Feb 300-308
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
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HIV-1 Epidemiology, Genetic Diversity, and Primary Drug Resistance in the Tyumen Oblast, Russia.
Gashnikova Natalya M et al. BioMed research international 2016 2496280 -
How's the Flu Getting Through? Landscape genetics suggests both humans and birds spread H5N1 in Egypt.
Young Sean G et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2017 Feb -
Investigation of intra-herd spread of Mycobacterium caprae in cattle by generation and use of a whole-genome sequence.
Broeckl S et al. Veterinary research communications 2017 Feb -
Next-generation sequencing as a tool for the study of PRRSV macro- and micro- molecular epidemiology
Cortey M, et al. Vet Microbiol, Feb 9, 2017.
HOST-MICROBE INTERACTIONS
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Estimating the Respective Contributions of Human and Viral Genetic Variation to HIV Control.
Bartha István et al. PLoS computational biology 2017 Feb (2) e1005339 -
Aedes-Borne Virus-Mosquito Interactions: Mass Spectrometry Strategies and Findings.
Pando-Robles Victoria et al. Vector borne and zoonotic diseases (Larchmont, N.Y.) 2017 Feb -
Nodding syndrome may be an autoimmune reaction to the parasitic worm Onchocerca volvulus .
Johnson Tory P et al. Science translational medicine 2017 02 (377)
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Differences in gut microbiota profile between women with active lifestyle and sedentary women.
Bressa Carlo et al. PloS one 2017 (2) e0171352 -
Dynamics of the human gut microbiome in inflammatory bowel disease.
Halfvarson Jonas et al. Nature microbiology 2017 Feb 17004
indicates that at least one CDC-affiliated author; indicates that the article addresses aspects of implementation or evaluation in clinical or public health practice. Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by Public Health Genomics Branch to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
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