Advanced Molecular Detection Clips Content (Published on 02/08/2024)
NEWS
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New rapid gonorrhea test shows promise in South African study
Dall C. CIDRAP, Feb 7, 2024. -
Probe confirms imported eye drops as source of extensively drug-resistant Pseudomonas outbreak
Dall C. CIDRAP, FEb 6, 2024. -
Study links high-risk HPV infection to increased heart-related deaths
Van Beuseukom M. CIDRAP, Feb 7, 2024. -
Lassa Fever Fatality Linked to Genetic Risk Loci in African GWAS
Anderson A. GenomeWeb, Feb 7, 2024.
EVENTS / TRAINING / WEB RESOURCES
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Ten simple rules for designing graphical abstracts.
Helena Klara Jambor et al. PLoS Comput Biol 2024 2 (2) e1011789
CONCEPTS / COMMENTS
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Editorial: Integration of NGS in clinical and public health microbiology workflows: applications, compliance, quality considerations.
Shangxin Yang et al. Front Public Health 2024 2 1357098 -
Pathogen genomics and One Health: a scoping review of current practices in zoonotic disease research
Catalano S, et al. medRxiv, Feb 5, 2024. -
A General Primer for Data Harmonization.
Cindy Cheng et al. Sci Data 2024 1 (1) 152 -
Help biocurators to maximize the reach of your data.
Alexander Holmes et al. PLoS Biol 2024 1 (1) e3002477 -
Ten simple rules for using large language models in science, version 1.0.
Gabriel Reuben Smith et al. PLoS Comput Biol 2024 1 (1) e1011767
METHODS / TOOLS
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Beyond blast: enabling microbiologists to better extract literature, taxonomic distributions and gene neighbourhood information for protein families.
Colbie J Reed et al. Microb Genom 2024 2 (2) -
COBRA improves the completeness and contiguity of viral genomes assembled from metagenomes.
LinXing Chen et al. Nat Microbiol 2024 2 -
Rapid, high-throughput, cost-effective whole-genome sequencing of SARS-CoV-2 using a condensed library preparation of the Illumina DNA Prep kit.
Rebecca Hickman et al. J Clin Microbiol 2024 2 e0010322 -
An amplicon-based nanopore sequencing workflow for rapid tracking of avian influenza outbreaks, France, 2020-2022.
Guillaume Croville et al. Front Cell Infect Microbiol 2024 2 1257586
EVOLUTION / ECOLOGY / POPULATIONS
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Pneumococcal population genomics changes during the early time period of conjugate vaccine uptake in southern India.
Iftekhar M Rafiqullah et al. Microb Genom 2024 2 (2) -
Longitudinal study of meningococcal carriage in adolescents and young adults in South Australia 2017-2020.
Mark McMillan et al. J Infect 2024 1 (2) 149-157 -
Whole genome sequencing and phylogenetic analysis of SARS-CoV-2 strains isolated during the COVID-19 pandemic in Nigeria.
Adedolapo B Olorunfemi et al. IJID Reg 2024 2 174-178 -
Genomic and transcriptomic analysis of the recent Mpox outbreak.
Federico M Giorgi et al. Vaccine 2024 2 -
Wastewater-based epidemiology applied at the building-level reveals distinct virome profiles based on the age of the contributing individuals.
Cristina Mejías-Molina et al. Hum Genomics 2024 2 (1) 10 -
HIV-1 Gag, Pol, and Env diversified with limited adaptation since the 1980s.
Eric Lewitus et al. mBio 2024 2 e0174923 -
Influenza vaccine compatibility among hospitalized patients during and after the COVID-19 pandemic.
Ilana S Fratty et al. Front Microbiol 2024 2 1296179 -
Population genetic structure of Aedes aegypti subspecies in selected geographical locations in Sudan.
Sara A Abuelmaali et al. Sci Rep 2024 2 (1) 2978 -
Mosquitoes provide a transmission route between possums and humans for Buruli ulcer in southeastern Australia.
Peter T Mee et al. Nat Microbiol 2024 1 (2) 377-389
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
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Genomic surveillance of STEC/EHEC infections in Germany 2020 to 2022 permits insight into virulence gene profiles and novel O-antigen gene clusters.
Angelika Fruth et al. Int J Med Microbiol 2024 2 151610 -
VirulenceFinder for Enterococcus faecium and Enterococcus lactis: an enhanced database for detection of putative virulence markers by using whole-genome sequencing data.
Louise Roer et al. Microbiol Spectr 2024 2 e0372423 -
Molecular Epidemiology of Escherichia coli Resistant to Carbapenems, Fluoroquinolones, and Aminoglycosides Isolated from One of the Largest Hospitals in Vietnam in 2014-2019.
Tohru Miyoshi-Akiyama et al. Can J Infect Dis Med Microbiol 2024 2 2711353 -
Historic methicillin-resistant Staphylococcus aureus: expanding current knowledge using molecular epidemiological characterization of a Swiss legacy collection.
Vanni Benvenga et al. Genome Med 2024 2 (1) 23 -
Rate of response to initial antiretroviral therapy according to level of pre-existing HIV-1 drug resistance detected by next-generation sequencing in the strategic timing of antiretroviral treatment (START) study.
Alessandro Cozzi-Lepri et al. HIV Med 2023 9 (2) 212-222 -
Epidemiology and Azole Resistance of Clinical Isolates of Aspergillus fumigatus from a Large Tertiary Hospital in Ningxia, China.
Yuting Kang et al. Infect Drug Resist 2024 2 427-439
DETECTION / DIAGNOSIS
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Integrated molecular, phenotypic and epidemiological surveillance of antimicrobial resistance in Neisseria gonorrhoeae in Germany.
Kathleen Klaper et al. Int J Med Microbiol 2024 2 151611 -
Serovar-level identification of bacterial foodborne pathogens from full-length 16S rRNA gene sequencing.
Dmitry Grinevich et al. mSystems 2024 2 e0075723 -
Results from the SARS-CoV-2 wastewater-based surveillance system in Denmark, July 2021 to June 2022.
Lene Wulff Krogsgaard et al. Water Res 2024 2 121223 -
A broad wastewater screening and clinical data surveillance for virus-related diseases in the metropolitan Detroit area in Michigan.
Yabing Li et al. Hum Genomics 2024 2 (1) 14 -
Using a mobile nanopore sequencing lab for end-to-end genomic surveillance of Plasmodium falciparum: A feasibility study.
Aurel Holzschuh et al. PLOS Glob Public Health 2024 2 (2) e0002743
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
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Long-term intensive care unit outbreak of carbapenamase-producing organisms associated with contaminated sink drains.
A Anantharajah et al. J Hosp Infect 2024 1 38-47 -
Use of Fourier-transform infrared spectroscopy for real-time outbreak investigation of OXA-48-producing Escherichia coli.
Hadas Kon et al. J Antimicrob Chemother 2023 12 (2) 349-353 -
Genomic surveillance of Clostridioides difficile transmission and virulence in a healthcare setting.
Erin P Newcomer et al. mBio 2024 2 e0330023 -
Consideration of within-patient diversity highlights transmission pathways and antimicrobial resistance gene variability in vancomycin-resistant Enterococcus faecium.
Martin P McHugh et al. J Antimicrob Chemother 2024 2 -
Notes from the Field: Nontuberculous Mycobacteria Infections After Cosmetic Surgery Procedures in Florida - Nine States, 2022-2023.
Katharine E Saunders et al. MMWR Morb Mortal Wkly Rep 2024 1 (3) 66-67 -
Investigation of an airport-associated cluster of falciparum malaria in Frankfurt, Germany, 2022.
Johanna Kessel et al. Euro Surveill 2024 2 (5)
HOST-MICROBE INTERACTIONS
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Large-scale validation of skin prion seeding activity as a biomarker for diagnosis of prion diseases.
Weiguanliu Zhang et al. Acta Neuropathol 2024 1 (1) 17 -
Genome-wide association study identifies human genetic variants associated with fatal outcome from Lassa fever.
Dylan Kotliar et al. Nat Microbiol 2024 2
Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by Public Health Genomics Branch to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
- Page last reviewed:Feb 1, 2024
- Page last updated:May 2, 2024
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