Advanced Molecular Detection Clips Content (Published on 01/14/2021)
NEWS
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Not if, but when: Michigan on lookout for faster-moving COVID variant
Erb R. Bridge Michigan, Jan 13, 2020. -
Ohio researchers say they've identified two new Covid strains likely originating in the U.S.
Feuer W. CNBC, Jan 13, 2021. -
Genetic Variants of SARS-CoV-2 May Lead to False Negative Results with Molecular Tests for Detection of SARS-CoV-2 - Letter to Clinical Laboratory Staff and Health Care Providers
(alert) FDA, Jan 8, 2021. -
Public Health England steps up surveillance of South African Covid variant
Sample I. Guardian, Jan 12, 2021. -
How COVID unlocked the power of RNA vaccines
Dolgin E. Nature, Jan 12, 2021. -
Could new COVID variants undermine vaccines? Labs scramble to find out
Callaway E. Nature, Jan 8, 2021. -
J&J One-Shot Vaccine Grants Lasting Response in Early Study
Griffin R. Bloomberg, Jan 13, 2021. -
Moderna believes it could update its coronavirus vaccine without a big new trial
Regalado A. MIT Tech Rev, Jan 13, 2021. -
Group creates global Ebola vaccine stockpile
McLemon LM. CIDRAP, Jan 12, 2021.
CONCEPTS / COMMENTS
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The biosecurity benefits of genetic engineering attribution.
Lewis Gregory et al. Nature communications 2020 12 (1) 6294 -
Preserve a Voucher Specimen! The Critical Need for Integrating Natural History Collections in Infectious Disease Studies
Thompson CW, et al. mBio 2021 Jan 12;12(1):e02698-20. -
Immunological characteristics govern the transition of COVID-19 to endemicity
Lavine JS, et al. Science, Jan 12, 2021. -
The genetic proteome: Using genetics to inform the proteome of mycobacterial pathogens.
Nicholson Kathleen R et al. PLoS pathogens 2021 Jan (1) e1009124
METHODS / TOOLS
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High-accuracy long-read amplicon sequences using unique molecular identifiers with Nanopore or PacBio sequencing
Karst SM, Nat Methods, Jan 11, 2021. -
A common protocol for the simultaneous processing of multiple clinically relevant bacterial species for whole genome sequencing.
Raven Kathy E et al. Scientific reports 2021 Jan (1) 193 -
A comprehensive and high-quality collection of Escherichia coli genomes and their genes.
Horesh Gal et al. Microbial genomics 2021 Jan -
Bias of library preparation for virome characterization in untreated and treated wastewaters.
Pérez-Cataluña Alba et al. The Science of the total environment 2020 Dec 144589 -
An integrated in silico immuno-genetic analytical platform provides insights into COVID-19 serological and vaccine targets.
Ward Daniel et al. Genome medicine 2021 01 (1) 4 -
Bioinformatics resources facilitate understanding and harnessing clinical research of SARS-CoV-2.
Ahsan Md Asif et al. Briefings in bioinformatics 2021 Jan
EVOLUTION / ECOLOGY / POPULATIONS
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Complete Genome Sequence of a Serotype 7 Listeria monocytogenes Strain, FSL R9-0915.
Peters Tracey Lee et al. Microbiology resource announcements 2021 Jan (1) -
Comparative genomics of ESBL-producing Escherichia coli (ESBL-Ec) reveals a similar distribution of the 10 most prevalent ESBL-Ec clones and ESBL genes among human community faecal and extra-intestinal infection isolates in the Netherlands (2014-17).
Verschuuren T D et al. The Journal of antimicrobial chemotherapy 2021 Jan -
Ten years of population-level genomic Escherichia coli and Klebsiella pneumoniae serotype surveillance informs vaccine development for invasive infections.
Lipworth Samuel et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2021 Jan -
Sequencing of SARS CoV2 in local transmission cases through oxford nanopore MinION platform from Karachi Pakistan
Mukry SN, et al. bioRxiv, Jan 7, 2021. -
A single nucleotide distinguishes the SARS-CoV-2 in the Wuhan outbreak in December 2019 from that in Beijing-Xinfadi in June 2020, China.
Pan Y-Q et al. New microbes and new infections 2021 Jan 100835 -
Earliest detection to date of SARS-CoV-2 in Florida: Identification together with influenza virus on the main entry door of a university building, February 2020.
Lednicky John et al. PloS one 2021 (1) e0245352 -
Origin and Spread of the Dengue Virus Type 1, Genotype V in Senegal, 2015-2019.
Dieng Idrissa et al. Viruses 2021 01 (1) -
Prevalence and Genetic Diversity of Aichi Virus 1 from Urban Wastewater in Senegal.
Kebe Ousmane et al. Intervirology 2021 Jan 1-6 -
Atlantic Forest Malaria: A Review of More than 20 Years of Epidemiological Investigation.
Buery Julyana Cerqueira et al. Microorganisms 2021 Jan (1) -
Patterns of relatedness and genetic diversity inferred from whole genome sequencing of archival blood fluke miracidia (Schistosoma japonicum).
Nikolakis Zachary L et al. PLoS neglected tropical diseases 2021 Jan (1) e0009020 -
Molecular Identification of Parasites Causing Cutaneous Leishmaniasis in Panama.
Miranda Aracelis Del C et al. The American journal of tropical medicine and hygiene 2021 Jan
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
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Characterization of Clostridioides difficile Isolates Available through the CDC & FDA Antibiotic Resistance Isolate Bank.
Paulick Ashley et al. Microbiology resource announcements 2021 Jan (1) -
Identifying novel β-lactamase substrate activity through in silico prediction of antimicrobial resistance.
Tsang Kara K et al. Microbial genomics 2021 Jan
DETECTION / DIAGNOSIS
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NGS-Based S. aureus Typing and Outbreak Analysis in Clinical Microbiology Laboratories: Lessons Learned From a Swiss-Wide Proficiency Test.
Dylus David et al. Frontiers in microbiology 2020 591093 -
Establishment of sentinel surveillance of human clinical campylobacteriosis in Ireland.
Brehony Carina et al. Zoonoses and public health 2021 Jan -
Neisseria gonorrhoeae Sequence Typing for Antimicrobial Resistance (NG-STAR) clonal complexes are consistent with genomic phylogeny and provide simple nomenclature, rapid visualization and antimicrobial resistance (AMR) lineage predictions.
Golparian Daniel et al. The Journal of antimicrobial chemotherapy 2021 Jan -
Acquisition of multidrug-resistant bacteria and encoding genes among French pilgrims during the 2017 and 2018 Hajj.
Hoang Van-Thuan et al. European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology 2021 Jan -
Saliva viral load is a dynamic unifying correlate of COVID-19 severity and mortality
Silva J, et al. medRxiv, Jan 10, 2021. -
Monitoring COVID-19 Transmission Risks by Quantitative Real-Time PCR Tracing of Droplets in Hospital and Living Environments.
Piana Andrea et al. mSphere 2021 01 (1) -
Effectiveness and cost-effectiveness of four different strategies for SARS-CoV-2 surveillance in the general population (CoV-Surv Study): a structured summary of a study protocol for a cluster-randomised, two-factorial controlled trial.
Deckert Andreas et al. Trials 2021 Jan (1) 39 -
Wastewater-based epidemiology as a useful tool to track SARS-CoV-2 and support public health policies at municipal level in Brazil.
Prado Tatiana et al. Water research 2021 Jan 116810 -
Pan-Enterovirus Amplicon-Based High-Throughput Sequencing Detects the Complete Capsid of a EVA71 Genotype C1 Variant via Wastewater-Based Epidemiology in Arizona.
Faleye Temitope O C et al. Viruses 2021 01 (1)
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
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Whole genome sequencing analysis reveals the spread of a vanB carrying transposon among different vancomycin-resistant Enterococcus faecium clinical isolates in a non-endemic setting.
Nijhuis R H T et al. The Journal of hospital infection 2021 Jan -
Emergence and Transmission of Daptomycin and Vancomycin-Resistant Enterococci Between Patients and Hospital Rooms.
El Haddad Lynn et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2021 Jan -
First genome sequencing of SARS-CoV-2 recovered from an infected cat and its owner in Latin America.
Carlos Renata Santiago Alberto et al. Transboundary and emerging diseases 2021 Jan -
Confirmed Reinfection with SARS-CoV-2 Variant VOC-202012/01.
Harrington David et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2021 Jan -
Nosocomial transmission and outbreaks of coronavirus disease 2019: the need to protect both patients and healthcare workers.
Abbas Mohamed et al. Antimicrobial resistance and infection control 2021 01 (1) 7 -
Establishment and lineage dynamics of the SARS-CoV-2 epidemic in the UK.
du Plessis Louis et al. Science (New York, N.Y.) 2021 Jan
ANTIMICROBIALS / VACCINES / INTERVENTIONS
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SARS-CoV-2 RBD Neutralizing Antibody Induction is Enhanced by Particulate Vaccination.
Huang Wei-Chiao et al. Advanced materials (Deerfield Beach, Fla.) 2020 Dec (50) e2005637 -
Improving the prediction of relapse after nucleos(t)ide analogue discontinuation in patients with chronic hepatitis B.
Song Do Seon et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2021 Jan -
Interim Results of a Phase 1�2a Trial of Ad26.COV2.S Covid-19 Vaccine
Sadoff J, et al. New Engl J Med, Jan 13, 2021.
HOST-MICROBE INTERACTIONS
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Impact of Genetic Variability in ACE2 Expression on the Evolutionary Dynamics of SARS-CoV-2 Spike D614G Mutation.
Huang Szu-Wei et al. Genes 2020 12 (1) -
Class I HLA Allele Predicted Restricted Antigenic Coverages for Spike and Nucleocapsid Proteins Are Associated With Deaths Related to COVID-19.
Pretti Marco Antônio M et al. Frontiers in immunology 2020 565730 -
Statistical power in COVID-19 case-control host genomic study design.
Lin Yu-Chung et al. Genome medicine 2020 12 (1) 115 -
The influence of evolutionary history on human health and disease.
Benton Mary Lauren et al. Nature reviews. Genetics 2021 Jan
Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by Public Health Genomics Branch to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
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