Advanced Molecular Detection Clips Content (Published on 01/11/2024)
NEWS
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2024: A Look Ahead
(blog post) Robison K. Omics! Omics! Jan 5, 2024. -
Backed by Mayo Clinic and Microsoft, a nonprofit forms to test AI tools used in health care
Ross C. STAT, Jan 8, 2024. -
Novel antibiotic class shows promise against carbapenem-resistant Acinetobacter
Dall C. CIDRAP, Jan 5, 2024. -
Fatal TB outbreak shows importance of screening tissue transplants
Soucheray S. CIDRAP, Jan 5, 2024. -
The U.S. is facing the biggest COVID wave since Omicron. Why are we still playing make-believe?
Topol E. Los Angeles Times, Jan 4, 2024. -
We Are in a Big Covid Wave. But Just How Big?
Paris F. New York Times, Jan 10, 2024. -
New Bacterial Epigenetic Sequencing Method Could Be Boon for Complex Microbiome Analyses
Ray F. GenomeWeb, Jan 5, 2024.
EVENTS / TRAINING / WEB RESOURCES
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Genomic Epi Jobs
(website) Allen K. Genomic Epi, accessed Jan 6, 2024. (blocked by OCIO)
POLICY
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Development of COVID-19 vaccine policy - United States, 2020-2023.
Sara E Oliver et al. Vaccine 2023 12 -
The Nairobi Declaration 2023: A Commitment to Address Deadly Yet Neglected Fungal Diseases in Africa.
Iriagbonse I Osaigbovo et al. Med Mycol 2023 12
CONCEPTS / COMMENTS
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Artificial Intelligence in battling infectious diseases: A transformative role.
Chunhui Li et al. J Med Virol 2024 1 (1) e29355 -
Combining Digital and Molecular Approaches Using Health and Alternate Data Sources in a Next-Generation Surveillance System for Anticipating Outbreaks of Pandemic Potential.
Pablo Ivan P Ramos et al. JMIR Public Health Surveill 2024 1 e47673 -
Molecular Epidemiology to Aid Virtual Elimination of HIV Transmission in Australia.
Billal M Obeng et al. Virus Res 2024 1 199310
METHODS / TOOLS
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A practical guide and Galaxy workflow to avoid inter-plasmidic repeat collapse and false gene loss in Unicycler's hybrid assemblies.
Lea Schäfer et al. Microb Genom 2024 1 (1) -
ViralWasm: a client-side user-friendly web application suite for viral genomics.
Daniel Ji et al. Bioinformatics 2024 1 -
Phylogenomic early warning signals for SARS-CoV-2 epidemic waves.
Kieran O Drake et al. EBioMedicine 2024 1 104939 -
A new paradigm for molecular dynamics databases: the COVID-19 database, the legacy of a titanic community effort.
Daniel Beltrán et al. Nucleic Acids Res 2023 11 (D1) D393-D403 -
An imputed ancestral reference genome for the Mycobacterium tuberculosis complex better captures structural genomic diversity for reference-based alignment workflows.
Luke B Harrison et al. Microb Genom 2024 1 (1) -
Using molecular methods to delineate norovirus outbreaks: a systematic review.
Luqiu Tao et al. Arch Virol 2024 1 (1) 16
EVOLUTION / ECOLOGY / POPULATIONS
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Population-based genomic surveillance of Pseudomonas aeruginosa causing bloodstream infections in a large Canadian health region.
Gisele Peirano et al. Eur J Clin Microbiol Infect Dis 2024 1 -
Rural populations facilitated early SARS-CoV-2 evolution and transmission in Missouri, USA.
Cynthia Y Tang et al. Npj Viruses 2024 1 -
Chronic COVID-19 infection in an immunosuppressed patient shows changes in lineage over time: a case report.
Sheridan J C Baker et al. Virol J 2024 1 (1) 8 -
Within-host evolutionary dynamics and tissue compartmentalization during acute SARS-CoV-2 infection.
Mireille Farjo et al. J Virol 2024 1 e0161823 -
Tracing the adaptive evolution of SARS-CoV-2 during vaccine roll-out in Norway.
Ignacio Garcia et al. Virus Evol 2024 1 (1) vead081 -
Spatiotemporal Distribution of PRRSV-1 Clades in Hungary with a Focus on the Era of Disease Eradication.
Ádám Bálint et al. Animals (Basel) 2024 1 (1) -
From Molecules to Ecosystems: Insights into a Network of Interactions for a Chagas Disease Outbreak Using Triatoma brasiliensis as Natural Samplers.
Carlos E Almeida et al. Acta Trop 2024 1 107107 -
Microfluidic PCR and network analysis reveals complex tick-borne pathogen interactions in the tropics.
Cristian Díaz-Corona et al. Parasit Vectors 2024 1 (1) 5
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
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Yersinia enterocolitica biovar 1A: An underappreciated potential pathogen in the food chain.
Rapha?lle Palau et al. Int J Food Microbiol 2024 1 110554 -
Insights gained from sequencing Australian non-invasive and invasive Streptococcus pyogenes isolates.
Trent A J Butler et al. Microb Genom 2024 1 (1) -
Genome sequencing unveils bla-harboring plasmids as drivers of enhanced resistance and virulence in nosocomial Klebsiella pneumoniae.
Xinhong Han et al. mSystems 2024 1 e0092423 -
Recent gene selection and drug resistance underscore clinical adaptation across Candida species.
Miquel Àngel Schikora-Tamarit et al. Nat Microbiol 2024 1 (1) 284-307
DETECTION / DIAGNOSIS
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Molecular epidemiology of SARS-CoV-2 in Northern South Africa: wastewater surveillance from January 2021 to May 2022.
Lisa Arrah Mbang Tambe et al. Front Public Health 2024 1 1309869 -
Comparison of analytical performance and economic value of two biosurveillance methods for tracking SARS-COV-2 variants of concern.
Nicholas P Pinkhover et al. Microbiol Spectr 2024 1 e0348423 -
High-resolution phylogeographical surveillance of Hantaan orthohantavirus using rapid amplicon-based Flongle sequencing, Republic of Korea.
Jongwoo Kim et al. J Med Virol 2024 1 (1) e29346 -
Viral Detection by Reverse Transcriptase Polymerase Chain Reaction in Upper Respiratory Tract and Metagenomic RNA Sequencing in Lower Respiratory Tract in Critically Ill Children With Suspected Lower Respiratory Tract Infection.
Christina M Osborne et al. Pediatr Crit Care Med 2023 9 (1) e1-e11
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
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Investigating environmental transmission to resolve a Bacillus cereus group outbreak in a neonatal intensive care unit using core genome multilocus sequence typing.
Hauke Tönnies et al. Antimicrob Resist Infect Control 2024 1 (1) 1 -
Second Nationwide Tuberculosis Outbreak Caused by Bone Allografts Containing Live Cells - United States, 2023.
Jonathan M Wortham et al. MMWR Morb Mortal Wkly Rep 2024 1 (5253) 1385-1389 -
Nosocomial surveillance of multidrug-resistant Acinetobacter baumannii: a genomic epidemiological study.
Zhimei Duan et al. Microbiol Spectr 2024 1 e0220723 -
Concurrent transmission of multiple carbapenemases in a long-term acute-care hospital.
Danielle A Rankin et al. Infect Control Hosp Epidemiol 2024 1 1-10 -
Transmission of Fluoroquinolones Resistance among Multidrug-Resistant Tuberculosis in Shanghai, China: A Retrospective population-based Genomic Epidemiology Study.
Minjuan Li et al. Emerg Microbes Infect 2024 1 2302837 -
Estimates of early outbreak-specific SARS-CoV-2 epidemiological parameters from genomic data.
Timothy G Vaughan et al. Proc Natl Acad Sci U S A 2024 1 (2) e2308125121
HOST-MICROBE INTERACTIONS
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Genetic determinants of IgG antibody response to COVID-19 vaccination.
Shengzhe Bian et al. Am J Hum Genet 2024 1 (1) 181-199
Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by Public Health Genomics Branch to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
- Page last reviewed:Feb 1, 2024
- Page last updated:Jan 16, 2025