Advanced Molecular Detection Clips Content (Published on 01/04/2024)
NEWS
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FDA Oversight of LDTs Likely to Drive Further Consolidation Within Lab Industry
Bonislawski A. 360dx, Dec 19, 2023. -
Spike in extensively drug-resistant Shigella cases reported in UK, Europe
Dall C. CIDRAP, Dec 28, 2023. -
2016 mpox outbreak in chimps at Cameroon sanctuary had 87% attack rate
Van Beusekom M. CIDRAP, Jan 3, 2024. -
Measles Virus Mutations Found to Drive Rare Lethal Brain Infection
Anderson A. GenomeWeb, Dec 21, 2023. -
Using genomics to track malaria in the US
Locke J. medical Xpress, Dec 20, 2023. -
Giant project will chart human immune diversity to improve drugs and vaccines
Leslie M. Science, Jan 2, 2024.
EVENTS / TRAINING / WEB RESOURCES
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Know-how of holding a Bioinformatics competition: Structure, model, overview, and perspectives.
Elvira C A Horácio et al. PLoS Comput Biol 2023 12 (12) e1011679 -
Pathways to genomic epidemiology: So how exactly do you become a genomic epidemiologist?
(blog post) Allen K. Applied and Genomic Epidemiology in Public Health, Dec 21, 2023. -
The regulatory divide: improving laboratory and epidemiology communications
(blog post) Allen K. Applied and Genomic Epidemiology in Public Health, Dec 30, 2023.
CONCEPTS / COMMENTS
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A Nationwide Network of Health AI Assurance Laboratories.
Nigam H Shah et al. JAMA 2023 12 -
Point-of-Care Testing for Hepatitis Viruses: A Growing Need.
Matthew D Pauly et al. Life (Basel) 2023 12 (12) -
Virology-the path forward.
Angela L Rasmussen et al. J Virol 2024 1 e0179123
METHODS / TOOLS
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Constructing an Interactive and Integrated Analysis and Identification Platform for Pathogenic Microorganisms to Support Surveillance Capacity.
Yang Song et al. Genes (Basel) 2023 12 (12)
EVOLUTION / ECOLOGY / POPULATIONS
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Genomic characterization of Bordetella pertussis in South Africa, 2015-2019.
Fahima Moosa et al. Microb Genom 2023 12 (12) -
Draft genome sequences of Listeria monocytogenes strains of sequence type 1733 which constituted a pseudo-outbreak due to contaminated blood agar media.
Sangmi Lee et al. Microbiol Resour Announc 2023 12 e0073223 -
Hawaiian Volcanic Ash, an Airborne Fomite for Nontuberculous Mycobacteria.
Stephanie N Dawrs et al. Geohealth 2024 1 (1) e2023GH000889 -
Pneumococcal population dynamics: Investigating vaccine-induced changes through multiscale modelling.
Nicola Mulberry et al. PLoS Comput Biol 2023 12 (12) e1011755 -
Sink-traps are a major source for carbapenemase-producing Enterobacteriaceae transmission.
Gili Regev-Yochay et al. Infect Control Hosp Epidemiol 2023 12 1-8 -
The genomic epidemiology of Neisseria meningitidis carriage from a randomised controlled trial of 4CMenB vaccination in an asymptomatic adolescent population.
Lex E X Leong et al. Lancet Reg Health West Pac 2024 1 100966 -
Predicting the spread of SARS-CoV-2 variants: An artificial intelligence enabled early detection.
Retsef Levi et al. PNAS Nexus 2024 1 (1) pgad424 -
Continued selection on cryptic SARS-CoV-2 observed in Missouri wastewater.
Devon A Gregory et al. PLoS Pathog 2023 12 (12) e1011688 -
Phylogenomics of Dengue Virus Isolates Causing Dengue Outbreak, São Tomé and Príncipe, 2022.
Lazismino Lázaro et al. Emerg Infect Dis 2024 1 (2) -
Re-Emergence of a West Nile Virus (WNV) Variant in South Spain with Rapid Spread Capacity.
María José Ruiz-López et al. Viruses 2023 12 (12) -
Genetic characteristics and geographic distribution of rabies virus in China.
Pei-Hua Wang et al. Arch Virol 2023 12 (1) 14 -
High prevalence and diversity of Toxoplasma gondii DNA in feral cat feces from coastal California.
Sophie Zhu et al. PLoS Negl Trop Dis 2023 12 (12) e0011829
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
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Disease-Associated Streptococcus pneumoniae Genetic Variation.
Shimin Yang et al. Emerg Infect Dis 2023 12 (1) 39-49 -
Brain tropism acquisition: The spatial dynamics and evolution of a measles virus collective infectious unit that drove lethal subacute sclerosing panencephalitis.
Iris Yousaf et al. PLoS Pathog 2023 12 (12) e1011817 -
Analysis of clinical Candida parapsilosis isolates reveals copy number variation in key fluconazole resistance genes.
Sean Bergin et al. bioRxiv 2024 1
DETECTION / DIAGNOSIS
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Development of a quadruplex PCR amplicon next generation sequencing assay for detection and differentiation of Bartonella spp.
Ying Bai et al. Front Microbiol 2023 12 1243471 -
Impact of Whole-Genome Sequencing of Mycobacterium tuberculosis on Treatment Outcomes for MDR-TB/XDR-TB: A Systematic Review.
Druti Hazra et al. Pharmaceutics 2023 12 (12) -
Rapid identification of enteric bacteria from whole genome sequences using average nucleotide identity metrics.
Rebecca L Lindsey et al. Front Microbiol 2023 12 1225207 -
Host-response transcriptional biomarkers accurately discriminate bacterial and viral infections of global relevance.
Emily R Ko et al. Sci Rep 2023 12 (1) 22554 -
Longitudinal genomic surveillance of multidrug-resistant Escherichia coli carriage in critical care patients.
Mira El Chaar et al. Microbiol Spectr 2024 1 e0312823 -
Machine learning-driven SERS fingerprinting of disintegrated viral components for rapid detection of SARS-CoV-2 in environmental dust.
Aditya Garg et al. Biosens Bioelectron 2023 12 115946 -
A response playbook for early detection and population surveillance of new SARS-CoV-2 variants in a regional public health laboratory.
Hannah J Barbian et al. BMC Public Health 2024 1 (1) 59 -
Detection and full genomic sequencing of rare hepatitis E virus genotype 4d in Italian wastewater, undetected by clinical surveillance.
C Veneri et al. Sci Total Environ 2023 12 169698 -
Correlation of wastewater surveillance data with traditional influenza surveillance measures in Cook County, Illinois, October 2022-April 2023.
Emily A G Faherty et al. Sci Total Environ 2023 12 169551 -
Respiratory Viruses in Wastewater Compared with Clinical Samples, Leuven, Belgium.
Annabel Rector et al. Emerg Infect Dis 2023 12 (1) 141-145 -
Metatranscriptomic data mining together with microfluidic card uncovered the potential pathogens and seasonal RNA viral ecology in a drinking water source.
Lixin Shen et al. J Appl Microbiol 2023 12 (1) -
Comparing the genetic typing methods for effective surveillance and rabies control in Georgia.
Rene E Condori et al. Front Microbiol 2023 12 1243510
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
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Genomic epidemiology of the clinically dominant clonal complex 1 in the Listeria monocytogenes population in the UK.
Emily T Fotopoulou et al. Microb Genom 2024 1 (1) -
Prolonged carriage of OXA-244-carbapenemase-producing Escherichia coli complicates epidemiological investigations.
Felix Reichert et al. Int J Med Microbiol 2023 12 151595 -
Inference of infectious disease transmission through a relaxed bottleneck using multiple genomes per host.
Jake Carson et al. Mol Biol Evol 2024 1 -
Second Nationwide Tuberculosis Outbreak Caused by Bone Allografts Containing Live Cells — United States, 2023
Wortham JM, et al. MMWR, Jan 5, 2024. -
The utility of whole-genome sequencing to inform epidemiologic investigations of SARS-CoV-2 clusters in acute-care hospitals.
Theodore S Rader et al. Infect Control Hosp Epidemiol 2023 12 1-6 -
Epidemiologic and Genomic Evidence for Zoonotic Transmission of SARS-CoV-2 among People and Animals on a Michigan Mink Farm, United States, 2020.
Ria R Ghai et al. Viruses 2023 12 (12) -
The Role of Late Presenters in HIV-1 Transmission Clusters in Europe.
Mafalda N S Miranda et al. Viruses 2023 12 (12) -
Characterization of Human Immunodeficiency Virus-1 Transmission Clusters and Transmitted Drug-Resistant Mutations in Croatia from 2019 to 2022.
Ana Planinic et al. Viruses 2023 12 (12) -
Phylogenetic Analysis of Hepatitis C Virus Infections in a Large Belgian Cohort Using Next-Generation Sequencing of Full-Length Genomes.
Kasper T Christensen et al. Viruses 2023 12 (12) -
Recombinant Forms of HIV-1 in the Last Decade of the Epidemic in the Russian Federation.
Anastasiia Antonova et al. Viruses 2023 12 (12) -
Using viral sequence diversity to estimate time of HIV infection in infants.
Magdalena L Russell et al. PLoS Pathog 2023 12 (12) e1011861 -
Investigating Local Patterns of Mumps Virus Circulation, Using a Combination of Molecular Tools.
Ana M Gavilán et al. Viruses 2023 12 (12) -
Molecular Epidemiology of Respiratory Syncytial Virus during 2019-2022 and Surviving Genotypes after the COVID-19 Pandemic in Japan.
Sayaka Yoshioka et al. Viruses 2023 12 (12) -
Use of Next-Generation Sequencing in a State-Wide Strategy of HIV-1 Surveillance: Impact of the SARS-COV-2 Pandemic on HIV-1 Diagnosis and Transmission.
Shuntai Zhou et al. J Infect Dis 2023 6 (12) 1758-1765 -
Transmission bottleneck size estimation from de novo viral genetic variation.
Yike Teresa Shi et al. Mol Biol Evol 2023 12 -
Clinical Manifestations of an Outbreak of Monkeypox Virus in Captive Chimpanzees in Cameroon, 2016.
Stephanie C Brien et al. J Infect Dis 2024 1 -
A cluster investigation of Candida auris among hospitalized incarcerated patients.
April N McDougal et al. Antimicrob Steward Healthc Epidemiol 2023 12 (1) e244
ANTIMICROBIALS / VACCINES / INTERVENTIONS
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Pseudoviruses, a safer toolbox for vaccine development against enveloped viruses.
Syamala R Thimmiraju et al. Expert Rev Vaccines 2024 1 (1) 174-185
HOST-MICROBE INTERACTIONS
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Uncovering associations between pre-existing conditions and COVID-19 Severity: A polygenic risk score approach across three large biobanks.
Lars G Fritsche et al. PLoS Genet 2023 12 (12) e1010907 -
Age-dependent heterogeneity in the antigenic effects of mutations to influenza hemagglutinin.
Frances C Welsh et al. bioRxiv 2024 1 -
Host genetic regulation of human gut microbial structural variation
Zhernakova DV, et al. Nature, Jan 3, 2024.
Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by Public Health Genomics Branch to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
- Page last reviewed:Feb 1, 2024
- Page last updated:Jan 16, 2025