CDC-Authored Genomics and Precision Health Publications Database
Last data update: Sep 03, 2024. (Total: 6282 publications)
Query Trace: Whole genome sequencing[original query] |
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Pathogen-agnostic advanced molecular diagnostic testing for difficult-to-diagnose clinical syndromes-results of an emerging infections network survey of frontline US infectious disease clinicians, May 2023
Rao PS , Downie DL , David-Ferdon C , Beekmann SE , Santibanez S , Polgreen PM , Kuehnert M , Courtney S , Lee JS , Chaitram J , Salerno RM , Gundlapalli AV . Open Forum Infect Dis 2024 11 (8) ofae395 ![]() |
An investigation of an outbreak of Salmonella Typhimurium infections linked to cantaloupe – United States, 2022
Seelman Federman S , Jenkins E , Wilson C , DeLaGarza A , Schwensohn C , Schneider B , Nsubuga J , Literman R , Wellman A , Whitney BM , Bell RL , Harris-Garner K , McKenna C , Brillhart D , Cross M , Rueber K , Schlichte T , Oni K , Adams J , Crosby AJ , Bazaco MC , Gieraltowski L , Nolte K , Viazis S . Food Control 2024 166 ![]() |
Detection of Leptospira kirschneri in a short-beaked common dolphin (Delphinus delphis delphis) stranded off the coast of southern California, USA
Prager KC , Danil K , Wurster E , Colegrove KM , Galloway R , Kettler N , Mani R , McDonough RF , Sahl JW , Stone NE , Wagner DM , Lloyd-Smith JO . BMC Vet Res 2024 20 (1) 266 ![]() |
Investigation of SARS-CoV-2 infection among companion animals in households with confirmed human COVID-19 Cases
Venkat H , Yaglom HD , Hecht G , Goedderz A , Ely JL , Sprenkle M , Martins T , Jasso-Selles D , Lemmer D , Gesimondo J , Ruberto I , Komatsu K , Engelthaler DM . Pathogens 2024 13 (6) ![]() |
Emergence of the novel sixth Candida auris Clade VI in Bangladesh
Khan T , Faysal NI , Hossain MM , Mah EMuneer S , Haider A , Moon SB , Sen D , Ahmed D , Parnell LA , Jubair M , Chow NA , Chowdhury F , Rahman M . Microbiol Spectr 2024 e0354023 ![]() |
Shiga toxin-producing Escherichia coli O157:H7 outbreak associated with school field trips at a farm animal exhibit-Tennessee, September-October 2023
Thomas CM , Foster A , Boop S , Kirschke D , Mooney H , Reid I , May AS , Mullins H , Garman KN , Golwalkar M , Marr JH , Orejuela K , Ripley D , Rasnic R , Terrell E , Durso LM , Schaffner W , Jones TF , Fill MA , Dunn JR . Zoonoses Public Health 2024 ![]() |
Molecular and epidemiological investigation of fluconazole-resistant Candida parapsilosis-Georgia, United States, 2021
Misas E , Witt LS , Farley MM , Thomas S , Jenkins EN , Gade L , Peterson JG , Mesa Restrepo A , Fridkin S , Lockhart SR , Chow NA , Lyman M . Open Forum Infect Dis 2024 11 (6) ofae264 ![]() |
SARS-CoV-2 delta variant in African lions (Panthera leo) and humans at Utah's Hogle Zoo, USA, 2021-22
Oltjen H , Crook E , Lanier WA , Rettler H , Oakeson KF , Young EL , Torchetti M , Van Wettere AJ . Zoonoses Public Health 2024 ![]() |
Outbreak of multidrug-resistant Salmonella infections in people linked to pig ear pet treats, United States, 2015–2019: results of a multistate investigation
Nichols M , Stapleton GS , Rotstein DS , Gollarza L , Adams J , Caidi H , Chen J , Hodges A , Glover M , Peloquin S , Payne L , Norris A , DeLancey S , Donovan D , Dietrich S , Glaspie S , McWilliams K , Burgess E , Holben B , Pietrzen K , Benko S , Feldpausch E , Orel S , Neises D , Kline KE , Tobin B , Caron G , Viveiros B , Miller A , Turner C , Holmes-Talbot K , Mank L , Nishimura C , Nguyen TN , Hale S , Francois Watkins LK . Lancet Reg Health - Am 2024 34 ![]() |
Sudan virus disease super-spreading, Uganda, 2022
Komakech A , Whitmer S , Izudi J , Kizito C , Ninsiima M , Ahirirwe SR , Kabami Z , Ario AR , Kadobera D , Kwesiga B , Gidudu S , Migisha R , Makumbi I , Eurien D , Kayiwa J , Bulage L , Gonahasa DN , Kyamwine I , Okello PE , Nansikombi HT , Atuhaire I , Asio A , Elayeete S , Nsubuga EJ , Masanja V , Migamba SM , Mwine P , Nakamya P , Nampeera R , Kwiringira A , Akunzirwe R , Naiga HN , Namubiru SK , Agaba B , Zalwango JF , Zalwango MG , King P , Simbwa BN , Zavuga R , Wanyana MW , Kiggundu T , Oonyu L , Ndyabakira A , Komugisha M , Kibwika B , Ssemanda I , Nuwamanya Y , Kamukama A , Aanyu D , Kizza D , Ayen DO , Mulei S , Balinandi S , Nyakarahuka L , Baluku J , Kyondo J , Tumusiime A , Aliddeki D , Masiira B , Muwanguzi E , Kimuli I , Bulwadda D , Isabirye H , Aujo D , Kasambula A , Okware S , Ochien E , Komakech I , Okot C , Choi M , Cossaboom CM , Eggers C , Klena JD , Osinubi MO , Sadigh KS , Worrell MC , Boore AL , Shoemaker T , Montgomery JM , Nabadda SN , Mwanga M , Muruta AN , Harris JR . BMC Infect Dis 2024 24 (1) 520 ![]() |
Characterizing the etiology of recurrent tuberculosis using whole genome sequencing-Alaska, USA, 2008-2020
Springer YP , Tompkins ML , Newell K , Jones M , Burns S , Chandler B , Cowan LS , Kammerer JS , Posey JE , Raz KM , Rothoff M , Silk BJ , Vergnetti YL , McLaughlin JB , Talarico S . J Infect Dis 2024 ![]() |
Characteristics, risk factors, and outcomes related to Zika virus infection during pregnancy in Northeastern Thailand: A prospective pregnancy cohort study, 2018-2020
Wongsawat J , Thamthitiwat S , Hicks VJ , Uttayamakul S , Teepruksa P , Sawatwong P , Skaggs B , Mock PA , MacArthur JR , Suya I , Sapchookul P , Kitsutani P , Lo TQ , Vachiraphan A , Kovavisarach E , Rhee C , Darun P , Saepueng K , Waisaen C , Jampan D , Sriboonrat P , Palanuwong B , Sukbut P , Areechokchai D , Pittayawonganon C , Iamsirithaworn S , Bloss E , Rao CY . PLoS Negl Trop Dis 2024 18 (5) e0012176 |
Clinical course, antifungal susceptibility, and genomic sequencing of trichophyton indotineae
Caplan AS , Todd GC , Zhu Y , Sikora M , Akoh CC , Jakus J , Lipner SR , Babbush K , Acker KP , Morales AE , Rolón RMM , Westblade LF , Fonseca M , Cline A , Gold JAW , Lockhart SR , Smith DJ , Chiller T , Greendyke WG , Manjari SR , Banavali NK , Chaturvedi S . JAMA Dermatol 2024 ![]() |
Carbapenem-resistant Acinetobacter baumannii complex in the United States - an epidemiological and molecular description of isolates collected through the Emerging Infections Program, 2019
Bulens SN , Campbell D , McKay SL , Vlachos N , Burgin A , Burroughs M , Padila J , Grass JE , Jacob JT , Smith G , Muleta DB , Maloney M , Macierowski B , Wilson LE , Vaeth E , Lynfield R , O'Malley S , Snippes Vagnone PM , Dale J , Janelle SJ , Czaja CA , Johnson H , Phipps EC , Flores KG , Dumyati G , Tsay R , Beldavs ZG , Maureen Cassidy P , Hall A , Walters MS , Guh AY , Magill SS , Lutgring JD . Am J Infect Control 2024 ![]() |
Genomic diversity and antimicrobial susceptibility of invasive Neisseria meningitidis in South Africa, 2016-2021
Mikhari RL , Meiring S , de Gouveia L , Chan WY , Jolley KA , Van Tyne D , Harrison LH , Marjuki H , Ismail A , Quan V , Cohen C , Walaza S , von Gottberg A , du Plessis M . J Infect Dis 2024 ![]() |
Genetic basis of clarithromycin resistance in Bacillus anthracis
Maxson T , Overholt WA , Chivukula V , Caban-Figueroa V , Kongphet-Tran T , Medina Cordoba LK , Cherney B , Rishishwar L , Conley A , Sue D . Microbiol Spectr 2024 e0418023 ![]() |
Outbreak of invasive Serratia marcescens among persons incarcerated in a state prison, California, USA, March 2020-December 2022
Kamali A , Ferguson D , Dowless H , Ortiz N , Mukhopadhyay R , Schember C , Lunsford R , Hutchinson J , Scherer M , Crandall J , Bauer H , Yu A , Kimura A . Emerg Infect Dis 2024 30 (13) S41-s48 ![]() |
Remote surveillance and detection of SARS-CoV-2 transmission among household members in King County, Washington
Emanuels A , Casto AM , Heimonen J , O'Hanlon J , Chow EJ , Ogokeh C , Rolfes MA , Han PD , Hughes JP , Uyeki TM , Frazar C , Chung E , Starita LM , Englund JA , Chu HY . BMC Infect Dis 2024 24 (1) 309 ![]() |
Streptococcus pneumoniae serotype 3 population structure in the era of conjugate vaccines, 2001-2018
Cella E , Sutcliffe CG , Grant LR , Tso C , Weatherholtz RC , Littlepage S , Becenti L , Jubair M , Simons BC , Harker-Jones M , Reid R , Yazzie D , Santosham M , O'Brien KL , Hammitt LL , Azarian T . Microb Genom 2024 10 (3) ![]() |
Tracing histoplasmosis genomic epidemiology and species occurrence across the USA
Tenório BG , Kollath DR , Gade L , Litvintseva AP , Chiller T , Jenness JS , Stajich JE , Matute DR , Hanzlicek AS , Barker BM , Teixeira MM . Emerg Microbes Infect 2024 13 (1) 2315960 ![]() |
Neuroinvasive bacillus cereus infection in immunocompromised hosts: Epidemiologic investigation of 5 patients with acute myeloid leukemia
Little JS , Coughlin C , Hsieh C , Lanza M , Huang WY , Kumar A , Dandawate T , Tucker R , Gable P , Vazquez Deida AA , Moulton-Meissner H , Stevens V , McAllister G , Ewing T , Diaz M , Glowicz J , Winkler ML , Pecora N , Kubiak DW , Pearson JC , Luskin MR , Sherman AC , Woolley AE , Brandeburg C , Bolstorff B , McHale E , Fortes E , Doucette M , Smole S , Bunnell C , Gross A , Platt D , Desai S , Fiumara K , Issa NC , Baden LR , Rhee C , Klompas M , Baker MA . Open Forum Infect Dis 2024 11 (3) ofae048 ![]() |
Strengthening Bordetella pertussis genomic surveillance by direct sequencing of residual positive specimens
Peng Y , Williams MM , Xiaoli L , Simon A , Fueston H , Tondella ML , Weigand MR . J Clin Microbiol 2024 e0165323 ![]() |
Expansion of Neisseria meningitidis serogroup C clonal complex 10217 during meningitis outbreak, Burkina Faso, 2019
Kekeisen-Chen JF , Tarbangdo FT , Sharma S , Marasini D , Marjuki H , Kibler JL , Reese HE , Ouattara S , Ake FH , Yameogo I , Ouedraogo I , Seini E , Zoma RL , Tonde I , Sanou M , Novak RT , McNamara LA . Emerg Infect Dis 2024 30 (3) 460-468 ![]() |
Emergence of zoonotic sporotrichosis in Brazil: a genomic epidemiology study
Ribeiro Dos Santos A , Misas E , Min B , Le N , Bagal UR , Parnell LA , Sexton DJ , Lockhart SR , de Souza Carvalho Melhem M , Takahashi JPF , Oliboni GM , Bonfieti LX , Cappellano P , Sampaio JLM , Araujo LS , Alves Filho HL , Venturini J , Chiller TM , Litvintseva AP , Chow NA . Lancet Microbe 2024 ![]() |
Salmonella Vitkin outbreak associated with bearded dragons, Canada and United States, 2020-2022
Paphitis K , Habrun CA , Stapleton GS , Reid A , Lee C , Majury A , Murphy A , McClinchey H , Corbeil A , Kearney A , Benedict K , Tolar B , Forrest RO . Emerg Infect Dis 2024 30 (2) 225-233 ![]() |
Newborn screening: from Guthrie to whole genome sequencing.
Caggana M , Jones EA , Shahied SI , Tanksley S , Hermerath CA , Lubin IM . Public Health Rep 2013 128 Suppl 2 14-9 |
Bacterial strain typing.
MacCannell D . Clin Lab Med 2013 33 (3) 629-50 |
Special issue on 'genetic diversity and evolution of rotavirus strains: possible impact of global immunization programs'.
Bányai K , Gentsch J . Infect Genet Evol 2014 28 375-6 |
Genomic sequencing of Neisseria gonorrhoeae to respond to the urgent threat of antimicrobial-resistant gonorrhea.
Abrams AJ , Trees DL . Pathog Dis 2017 75 (4) |
SARS-CoV-2 shedding and evolution in patients who were immunocompromised during the omicron period: a multicentre, prospective analysis
Raglow Z , Surie D , Chappell JD , Zhu Y , Martin ET , Kwon JH , Frosch AE , Mohamed A , Gilbert J , Bendall EE , Bahr A , Halasa N , Talbot HK , Grijalva CG , Baughman A , Womack KN , Johnson C , Swan SA , Koumans E , McMorrow ML , Harcourt JL , Atherton LJ , Burroughs A , Thornburg NJ , Self WH , Lauring AS . Lancet Microbe 2024 ![]() |
- Page last reviewed:Feb 1, 2024
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