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CDC-Authored Genomics and Precision Health Publications Database|Home|PHGKB

CDC-Authored Genomics and Precision Health Publications Database


Last data update: Jan 26, 2023. (Total: 4179 publications since 2011)
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Records 1-30 (of 30 Records)
Query Trace: Microbiome[original query]
Gut Microbiome Composition and Metabolic Capacity Differ by FUT2 Secretor Status in Exclusively Breastfed Infants.
Alexander W Thorman, Grace Adkins, Shannon C Conrey, Allison R Burrell, Ying Yu, Brendon White, Rachel Burke, David Haslam, Daniel C Payne, Mary A Staat, Ardythe L Morrow, and David S Newburg
Nutrients 2023 15(2)
An improved workflow for accurate and robust healthcare environmental surveillance using metagenomics.
Jiaxian Shen, Alexander G McFarland, Ryan A Blaustein, Laura J Rose, K Allison Perry-Dow, Anahid A Moghadam, Mary K Hayden, Vincent B Young, and Erica M Hartmann
Microbiome 2022 10(1) 206
What Can We Learn about the Bias of Microbiome Studies from Analyzing Data from Mock Communities?
Mo Li, Robert E Tyx, Angel J Rivera, Ni Zhao, and Glen A Satten
Genes 2022 13(10)
Gut Microbiome Changes Occurring with Norovirus Infection and Recovery in Infants Enrolled in a Longitudinal Birth Cohort in Leon, Nicaragua.
Jennifer L Cannon, Matthew H Seabolt, Ruijie Xu, Anna Montmayeur, Soo Hwan Suh, Marta Diez-Valcarce, Filemón Bucardo, Sylvia Becker-Dreps, and Jan Vinjé
Viruses 2022 14(7)
A Bottom-up Approach to Testing Hypotheses That Have a Branching Tree Dependence Structure, with Error Rate Control.
Yunxiao Li, Yi-Juan Hu, and Glen A Satten
Journal of the American Statistical Association 2022 117(538) 664-677
Selective Whole-Genome Amplification as a Tool to Enrich Specimens with Low Treponema pallidum Genomic DNA Copies for Whole-Genome Sequencing.
Charles M Thurlow, Sandeep J Joseph, Lilia Ganova-Raeva, Samantha S Katz, Lara Pereira, Cheng Chen, Alyssa Debra, Kendra Vilfort, Kimberly Workowski, Stephanie E Cohen, Hilary Reno, Yongcheng Sun, Mark Burroughs, Mili Sheth, Kai-Hua Chi, Damien Danavall, Susan S Philip, Weiping Cao, Ellen N Kersh, and Allan Pillay
mSphere 2022 e0000922
Association of Secretor Status and Recent Norovirus Infection With Gut Microbiome Diversity Metrics in a Veterans Affairs Population.
Jordan A Johnson, Timothy D Read, Robert A Petit, Vincent C Marconi, Kathryn L Meagley, Maria C Rodriguez-Barradas, David O Beenhouwer, Sheldon T Brown, Mark Holodniy, Cynthia A Lucero-Obusan, Patricia Schirmer, Jessica M Ingersoll, Colleen S Kraft, Frederick H Neill, Robert L Atmar, Anita K Kambhampati, Jordan E Cates, Sara A Mirza, Aron J Hall, Cristina V Cardemil, and Benjamin A Lopman
Open forum infectious diseases 2022 9(5) ofac125
Litter Commensal Bacteria Can Limit the Horizontal Gene Transfer of Antimicrobial Resistance to Salmonella in Chickens.
Adelumola Oladeinde, Zaid Abdo, Benjamin Zwirzitz, Reed Woyda, Steven M Lakin, Maximilian O Press, Nelson A Cox, Jesse C Thomas, Torey Looft, Michael J Rothrock, Gregory Zock, Jodie Plumblee Lawrence, Denice Cudnik, Casey Ritz, Samuel E Aggrey, Ivan Liachko, Jonas R Grove, and Crystal Wiersma
Applied and environmental microbiology 2022 e0251721
Comprehensive characterization of internal and cuticle surface microbiota of laboratory-reared F Anopheles albimanus originating from different sites.
Nsa Dada, Ana Cristina Benedict, Francisco López, Juan C Lol, Mili Sheth, Nicole Dzuris, Norma Padilla, and Audrey Lenhart
Malaria journal 2021 20(1) 414
The Effect of Disinfectants on the Microbial Community on Environmental Healthcare Surfaces using Next Generation Sequencing.
K A Perry-Dow, Tjb de Man, A Laufer Halpin, A M Shams, L J Rose, and J A Noble-Wang
American journal of infection control 2021
Skin Metagenomic Sequence Analysis of Early Candida auris Outbreaks in U.S. Nursing Homes.
Xin Huang, Rory M Welsh, Clay Deming, Diana M Proctor, Pamela J Thomas, , Gabrielle M Gussin, Susan S Huang, Heidi H Kong, Meghan L Bentz, Snigdha Vallabhaneni, Tom Chiller, Brendan R Jackson, Kaitlin Forsberg, Sean Conlan, Anastasia P Litvintseva, and Julia A Segre
mSphere 2021 e0028721
Constraining PERMANOVA and LDM to within-set comparisons by projection improves the efficiency of analyses of matched sets of microbiome data.
Zhengyi Zhu, Glen A Satten, Caroline Mitchell, and Yi-Juan Hu
Microbiome 2021 9(1) 133
Microbial community structure and composition is associated with host species and sex in Sigmodon cotton rats.
Britton A Strickland, Mira C Patel, Meghan H Shilts, Helen H Boone, Arash Kamali, Wei Zhang, Daniel Stylos, Marina S Boukhvalova, Christian Rosas-Salazar, Shibu Yooseph, Seesandra V Rajagopala, Jorge C G Blanco, and Suman R Das
Animal microbiome 2021 3(1) 29
Erratum for Patin et al., "The Role of the Gut Microbiome in Resisting Norovirus Infection as Revealed by a Human Challenge Study".
N V Patin, A Peña-Gonzalez, J K Hatt, C Moe, A Kirby, and K T Konstantinidis
mBio 2021 12(2)
The State of Microbiome Science at the Intersection of Infectious Diseases and Antimicrobial Resistance.
Ryan T Ranallo, L Clifford McDonald, Alison Laufer Halpin, Thomas Hiltke, and Vincent B Young
The Journal of infectious diseases 2021
Bacterial community assemblages in classroom floor dust of 50 public schools in a large city: characterization using 16S rRNA sequences and associations with environmental factors.
Ju-Hyeong Park, Angela R Lemons, Jerry Roseman, Brett J Green, and Jean M Cox-Ganser
Microbiome 2021 9(1) 15
Sensitive universal detection of blood parasites by selective pathogen-DNA enrichment and deep amplicon sequencing.
Briana R Flaherty, Joel Barratt, Meredith Lane, Eldin Talundzic, and Richard S Bradbury
Microbiome 2021 Jan 9(1) 1
The Role of the Gut Microbiome in Resisting Norovirus Infection as Revealed by a Human Challenge Study.
N V Patin, A Peña-Gonzalez, J K Hatt, C Moe, A Kirby, and K T Konstantinidis
mBio 2020 Nov 11(6)
Integrating population genetic structure, microbiome, and pathogens presence data in Dermacentor variabilis .
Paula Lado, Bo Luan, Michelle E J Allerdice, Christopher D Paddock, Sandor E Karpathy, and Hans Klompen
PeerJ 2020 8e9367
Testing hypotheses about the microbiome using the linear decomposition model (LDM).
Yi-Juan Hu, and Glen A Satten
Bioinformatics (Oxford, England) 2020 Apr
Viruses in the Built Environment (VIBE) meeting report.
Aaron J Prussin, Jessica A Belser, Werner Bischoff, Scott T Kelley, Kaisen Lin, William G Lindsley, Jean Pierre Nshimyimana, Michael Schuit, Zhenyu Wu, Kyle Bibby, and Linsey C Marr
Microbiome 2020 Jan 8(1) 1
Restriction enzyme digestion of host DNA enhances universal detection of parasitic pathogens in blood via targeted amplicon deep sequencing.
Briana R Flaherty, Eldin Talundzic, Joel Barratt, Kristine J Kines, Christian Olsen, Meredith Lane, Mili Sheth, and Richard S Bradbury
Microbiome 2018 Sep (1) 164
Impact of the griffithsin anti-HIV microbicide and placebo gels on the rectal mucosal proteome and microbiome in non-human primates.
Lauren Girard, Kenzie Birse, Johanna B Holm, Pawel Gajer, Mike S Humphrys, David Garber, Patricia Guenthner, Laura Noël-Romas, Max Abou, Stuart McCorrister, Garrett Westmacott, Lin Wang, Lisa C Rohan, Nobuyuki Matoba, Janet McNicholl, Kenneth E Palmer, Jacques Ravel, and Adam D Burgener
Scientific reports 2018 May (1) 8059
The Female Genital Tract Microbiome Is Associated With Vaginal Antiretroviral Drug Concentrations in Human Immunodeficiency Virus-Infected Women on Antiretroviral Therapy.
Renee Donahue Carlson, Anandi N Sheth, Timothy D Read, Michael B Frisch, C Christina Mehta, Amy Martin, Richard E Haaland, Anar S Patel, Chou-Pong Pau, Colleen S Kraft, and Igho Ofotokun
The Journal of infectious diseases 2017 Oct
Microbiome sharing between children, livestock and household surfaces in western Kenya.
Emily Mosites, Matt Sammons, Elkanah Otiang, Alexander Eng, Cecilia Noecker, Ohad Manor, Sarah Hilton, Samuel M Thumbi, Clayton Onyango, Gemina Garland-Lewis, Douglas R Call, M Kariuki Njenga, Judith N Wasserheit, Jennifer A Zambriski, Judd L Walson, Guy H Palmer, Joel Montgomery, Elhanan Borenstein, Richard Omore, and Peter M Rabinowitz
PloS one 2017 (2) e0171017
Restoring the Duality between Principal Components of a Distance Matrix and Linear Combinations of Predictors, with Application to Studies of the Microbiome.
Glen A Satten, Robert E Tyx, Angel J Rivera, and Stephen Stanfill
PloS one 2017 12(1) e0168131
The gut microbiota in conventional and serrated precursors of colorectal cancer.
Brandilyn A Peters, Christine Dominianni, Jean A Shapiro, Timothy R Church, Jing Wu, George Miller, Elizabeth Yuen, Hal Freiman, Ian Lustbader, James Salik, Charles Friedlander, Richard B Hayes, and Jiyoung Ahn
Microbiome 2016 Dec (1) 69
Intestinal microbiome disruption in patients in a long-term acute care hospital: A case for development of microbiome disruption indices to improve infection prevention.
Alison Laufer Halpin, Tom J B de Man, Colleen S Kraft, K Allison Perry, Austin W Chan, Sung Lieu, Jeffrey Mikell, Brandi M Limbago, and L Clifford McDonald
American journal of infection control 2016 Feb
Characterizing the fecal microbiota of infants with botulism.
T Brian Shirey, Janet K Dykes, Carolina Lúquez, Susan E Maslanka, and Brian H Raphael
Microbiome 2015 (1) 54
Beta-diversity metrics of the upper digestive tract microbiome are associated with body mass index.
Shih-Wen Lin, Neal D Freedman, Jianxin Shi, Mitchell H Gail, Emily Vogtmann, Guoqin Yu, Vanja Klepac-Ceraj, Bruce J Paster, Bruce A Dye, Guo-Qing Wang, Wen-Qiang Wei, Jin-Hu Fan, You-Lin Qiao, Sanford M Dawsey, and Christian C Abnet
Obesity (Silver Spring) 2015 Apr (4) 862-9
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