CDC-Authored Genomics and Precision Health Publications Database
Last data update: May 30, 2023. (Total: 4302 publications since 2011)
| Query Trace: Microbiome[original query] |
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| Gut Microbiome Composition and Metabolic Capacity Differ by FUT2 Secretor Status in Exclusively Breastfed Infants.
Thorman AW , Adkins G , Conrey SC , Burrell AR , Yu Y , White B , Burke R , Haslam D , Payne DC , Staat MA , Morrow AL , Newburg DS . Nutrients 2023 15 (2) |
| An improved workflow for accurate and robust healthcare environmental surveillance using metagenomics.
Shen J , McFarland AG , Blaustein RA , Rose LJ , Perry-Dow KA , Moghadam AA , Hayden MK , Young VB , Hartmann EM . Microbiome 2022 10 (1) 206 |
| What Can We Learn about the Bias of Microbiome Studies from Analyzing Data from Mock Communities?
Li M , Tyx RE , Rivera AJ , Zhao N , Satten GA . Genes (Basel) 2022 13 (10) |
| Gut Microbiome Changes Occurring with Norovirus Infection and Recovery in Infants Enrolled in a Longitudinal Birth Cohort in Leon, Nicaragua.
Cannon JL , Seabolt MH , Xu R , Montmayeur A , Suh SH , Diez-Valcarce M , Bucardo F , Becker-Dreps S , Vinj J . Viruses 2022 14 (7) |
| Selective Whole-Genome Amplification as a Tool to Enrich Specimens with Low Treponema pallidum Genomic DNA Copies for Whole-Genome Sequencing.
Thurlow CM , Joseph SJ , Ganova-Raeva L , Katz SS , Pereira L , Chen C , Debra A , Vilfort K , Workowski K , Cohen SE , Reno H , Sun Y , Burroughs M , Sheth M , Chi KH , Danavall D , Philip SS , Cao W , Kersh EN , Pillay A . mSphere 2022 7 (3) e0000922 |
| Association of Secretor Status and Recent Norovirus Infection With Gut Microbiome Diversity Metrics in a Veterans Affairs Population.
Johnson JA , Read TD , Petit RA3rd , Marconi VC , Meagley KL , Rodriguez-Barradas MC , Beenhouwer DO , Brown ST , Holodniy M , Lucero-Obusan CA , Schirmer P , Ingersoll JM , Kraft CS , Neill FH , Atmar RL , Kambhampati AK , Cates JE , Mirza SA , Hall AJ , Cardemil CV , Lopman BA . Open Forum Infect Dis 2022 9 (5) ofac125 |
| Litter Commensal Bacteria Can Limit the Horizontal Gene Transfer of Antimicrobial Resistance to Salmonella in Chickens.
Oladeinde A , Abdo Z , Zwirzitz B , Woyda R , Lakin SM , Press MO , Cox NA , Thomas JCth , Looft T , Rothrock MJJr , Zock G , PlumbleeLawrence J , Cudnik D , Ritz C , Aggrey SE , Liachko I , Grove JR , Wiersma C . Appl Environ Microbiol 2022 88 (9) e0251721 |
| Comprehensive characterization of internal and cuticle surface microbiota of laboratory-reared F Anopheles albimanus originating from different sites.
Dada N , Benedict AC , Lpez F , Lol JC , Sheth M , Dzuris N , Padilla N , Lenhart A . Malar J 2021 20 (1) 414 |
| The Effect of Disinfectants on the Microbial Community on Environmental Healthcare Surfaces using Next Generation Sequencing.
Perry-Dow KA , deMan T , Halpin AL , Shams AM , Rose LJ , Noble-Wang JA . Am J Infect Control 2021 50 (1) 54-60 |
| Microbial signatures in the lower airways of mechanically ventilated COVID-19 patients associated with poor clinical outcome.
Sulaiman I , Chung M , Angel L , Tsay JJ , Wu BG , Yeung ST , Krolikowski K , Li Y , Duerr R , Schluger R , Thannickal SA , Koide A , Rafeq S , Barnett C , Postelnicu R , Wang C , Banakis S , Prez-Prez L , Shen G , Jour G , Meyn P , Carpenito J , Liu X , Ji K , Collazo D , Labarbiera A , Amoroso N , Brosnahan S , Mukherjee V , Kaufman D , Bakker J , Lubinsky A , Pradhan D , Sterman DH , Weiden M , Heguy A , Evans L , Uyeki TM , Clemente JC , deWit E , Schmidt AM , Shopsin B , Desvignes L , Wang C , Li H , Zhang B , Forst CV , Koide S , Stapleford KA , Khanna KM , Ghedin E , Segal LN . Nat Microbiol 2021 6 (10) 1245-1258 
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| Skin Metagenomic Sequence Analysis of Early Candida auris Outbreaks in U.S. Nursing Homes.
Huang X , Welsh RM , Deming C , Proctor DM , Thomas PJ , Gussin GM , Huang SS , Kong HH , Bentz ML , Vallabhaneni S , Chiller T , Jackson BR , Forsberg K , Conlan S , Litvintseva AP , Segre JA . mSphere 2021 6 (4) e0028721 |
| Integrated genomic, epidemiologic investigation of Candida auris skin colonization in a skilled nursing facility.
Proctor DM , Dangana T , Sexton DJ , Fukuda C , Yelin RD , Stanley M , Bell PB , Baskaran S , Deming C , Chen Q , Conlan S , Park M , Welsh RM , Vallabhaneni S , Chiller T , Forsberg K , Black SR , Pacilli M , Kong HH , Lin MY , Schoeny ME , Litvintseva AP , Segre JA , Hayden MK . Nat Med 2021 27 (8) 1401-1409 |
| Constraining PERMANOVA and LDM to within-set comparisons by projection improves the efficiency of analyses of matched sets of microbiome data.
Zhu Z , Satten GA , Mitchell C , Hu YJ . Microbiome 2021 9 (1) 133 |
| Microbial community structure and composition is associated with host species and sex in Sigmodon cotton rats.
Strickland BA , Patel MC , Shilts MH , Boone HH , Kamali A , Zhang W , Stylos D , Boukhvalova MS , Rosas-Salazar C , Yooseph S , Rajagopala SV , Blanco JCG , Das SR . Anim Microbiome 2021 3 (1) 29 |
| American Academy of Optometry Microbial Keratitis Think Tank.
Szczotka-Flynn LB , Shovlin JP , Schnider CM , Caffery BE , Alfonso EC , Carnt NA , Chalmers RL , Collier S , Jacobs DS , Joslin CE , Kroken AR , Lakkis C , Pearlman E , Schein OD , Stapleton F , Tu E , Willcox MDP . Optom Vis Sci 2021 98 (3) 182-198 |
| The State of Microbiome Science at the Intersection of Infectious Diseases and Antimicrobial Resistance.
Ranallo RT , McDonald LC , Halpin AL , Hiltke T , Young VB . J Infect Dis 2021 223 S187-S193 |
| Erratum for Patin et al., "The Role of the Gut Microbiome in Resisting Norovirus Infection as Revealed by a Human Challenge Study".
Patin N V, Peña-Gonzalez A, Hatt J K, Moe C, Kirby A, Konstantinidis K T. mBio 2021 12(2) . mBio 2021 12(2) |
| Bacterial community assemblages in classroom floor dust of 50 public schools in a large city: characterization using 16S rRNA sequences and associations with environmental factors.
Park JH , Lemons AR , Roseman J , Green BJ , Cox-Ganser JM . Microbiome 2021 9 (1) 15 |
| Sensitive universal detection of blood parasites by selective pathogen-DNA enrichment and deep amplicon sequencing.
Flaherty BR , Barratt J , Lane M , Talundzic E , Bradbury RS . Microbiome 2021 9 (1) 1 |
| Microbial communities and gene contributions in smokeless tobacco products.
Rivera AJ , Tyx RE , Keong LM , Stanfill SB , Watson CH . Appl Microbiol Biotechnol 2020 104 (24) 10613-10629 |
| The Role of the Gut Microbiome in Resisting Norovirus Infection as Revealed by a Human Challenge Study.
Patin NV , Pea-Gonzalez A , Hatt JK , Moe C , Kirby A , Konstantinidis KT . mBio 2020 11 (6) |
| A Bottom-up Approach to Testing Hypotheses That Have a Branching Tree Dependence Structure, with Error Rate Control.
Li Y , Hu YJ , Satten GA . J Am Stat Assoc 2020 117 (538) 664-677 |
| STROBE-metagenomics: a STROBE extension statement to guide the reporting of metagenomics studies.
Bharucha T , Oeser C , Balloux F , Brown JR , Carbo EC , Charlett A , Chiu CY , Claas ECJ , deGoffau MC , deVries JJC , Eloit M , Hopkins S , Huggett JF , MacCannell D , Morfopoulou S , Nath A , O'Sullivan DM , Reoma LB , Shaw LP , Sidorov I , Simner PJ , VanTan L , Thomson EC , vanDorp L , Wilson MR , Breuer J , Field N . Lancet Infect Dis 2020 20 (10) e251-e260 |
| Integrating population genetic structure, microbiome, and pathogens presence data in Dermacentor variabilis .
Lado P , Luan B , Allerdice MEJ , Paddock CD , Karpathy SE , Klompen H . PeerJ 2020 8 e9367 |
| Testing hypotheses about the microbiome using the linear decomposition model (LDM).
Hu YJ , Satten GA . Bioinformatics 2020 36 (14) 4106-4115 |
| Viruses in the Built Environment (VIBE) meeting report.
Prussin AJ 2nd , Belser JA , Bischoff W , Kelley ST , Lin K , Lindsley WG , Nshimyimana JP , Schuit M , Wu Z , Bibby K , Marr LC . Microbiome 2020 8 (1) 1 |
| On the Origins of a Species: What Might Explain the Rise of Candida auris ?
Jackson BR , Chow N , Forsberg K , Litvintseva AP , Lockhart SR , Welsh R , Vallabhaneni S , Chiller T . J Fungi (Basel) 2019 5 (3) |
| Technology for the prevention of antimicrobial resistance and healthcare-associated infections; 2017 Geneva IPC-Think Tank (Part 2).
Zingg W , Park BJ , Storr J , Ahmad R , Tarrant C , Castro-Sanchez E , Perencevich E , Widmer A , Krause KH , Kilpatrick C , Tomczyk S , Allegranzi B , Cardo D , Pittet D . Antimicrob Resist Infect Control 2019 8 83 |
| Novel Wolbachia strains in Anopheles malaria vectors from Sub-Saharan Africa.
Jeffries CL , Lawrence GG , Golovko G , Kristan M , Orsborne J , Spence K , Hurn E , Bandibabone J , Tantely LM , Raharimalala FN , Keita K , Camara D , Barry Y , Wat'senga F , Manzambi EZ , Afrane YA , Mohammed AR , Abeku TA , Hedge S , Khanipov K , Pimenova M , Fofanov Y , Boyer S , Irish SR , Hughes GL , Walker T . Wellcome Open Res 2018 3 113 |
| Restriction enzyme digestion of host DNA enhances universal detection of parasitic pathogens in blood via targeted amplicon deep sequencing.
Flaherty BR , Talundzic E , Barratt J , Kines KJ , Olsen C , Lane M , Sheth M , Bradbury RS . Microbiome 2018 6 (1) 164 |
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- Page last updated:May 30, 2023
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