CDC-Authored Genomics and Precision Health Publications Database
Last data update: Nov 04, 2024. (Total: 6390 publications)
| Query Trace: Microbiome[original query] |
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| Select gut microbiota impede rotavirus vaccine efficacy
Ngo VL , Wang Y , Wang Y , Shi Z , Britton R , Zou J , Ramani S , Jiang B , Gewirtz AT . Cell Mol Gastroenterol Hepatol 2024 101393 
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| Public health case for microbiome-sparing antibiotics and new opportunities for drug development
McDonald LC , Young VB , Wilcox MH , Halpin AL , Chaves RL . mSphere 2024 e0041724
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| The relationship between the intestinal microbiome and body mass index in children with cystic fibrosis
Bernard R , Shilts MH , Strickland BA , Boone HH , Payne DC , Brown RF , Edwards K , Das SR , Nicholson MR . J Cyst Fibros 2023 |
| Vaginal microbiome, antiretroviral concentrations, and HIV genital shedding in the setting of hormonal contraception initiation in Malawi
Lantz AM , Cottrell ML , Corbett AH , Chinula L , Kourtis AP , Nelson JAE , Tegha G , Hurst S , Gajer P , Ravel J , Haddad LB , Tang JH , Nicol MR . AIDS 2023 37 (14) 2185-2190 |
| Gut microbiome perturbation, antibiotic resistance, and Escherichia coli strain dynamics associated with international travel: a metagenomic analysis
Worby CJ , Sridhar S , Turbett SE , Becker MV , Kogut L , Sanchez V , Bronson RA , Rao SR , Oliver E , Walker AT , Walters MS , Kelly P , Leung DT , Knouse MC , Hagmann SHF , Harris JB , Ryan ET , Earl AM , LaRocque RC . Lancet Microbe 2023 4 (10) e790-e799
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| Greener residential environment is associated with increased bacterial diversity in outdoor ambient air
Styles JN , Egorov AI , Griffin SM , Klein J , Scott JW , Sams EA , Hudgens E , Mugford C , Stewart JR , Lu K , Jaspers I , Keely SP , Brinkman NE , Arnold JW , Wade TJ . Sci Total Environ 2023 880 163266 |
| Erratum for Patin et al., "The Role of the Gut Microbiome in Resisting Norovirus Infection as Revealed by a Human Challenge Study".
Patin NV , Peña-Gonzalez A , Hatt JK , Moe C , Kirby A , Konstantinidis KT . mBio 2021 12 (2) |
| Gut Microbiome Composition and Metabolic Capacity Differ by FUT2 Secretor Status in Exclusively Breastfed Infants.
Thorman AW , Adkins G , Conrey SC , Burrell AR , Yu Y , White B , Burke R , Haslam D , Payne DC , Staat MA , Morrow AL , Newburg DS . Nutrients 2023 15 (2)
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| An improved workflow for accurate and robust healthcare environmental surveillance using metagenomics.
Shen J , McFarland AG , Blaustein RA , Rose LJ , Perry-Dow KA , Moghadam AA , Hayden MK , Young VB , Hartmann EM . Microbiome 2022 10 (1) 206
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| What Can We Learn about the Bias of Microbiome Studies from Analyzing Data from Mock Communities?
Li M , Tyx RE , Rivera AJ , Zhao N , Satten GA . Genes (Basel) 2022 13 (10) |
| Gut Microbiome Changes Occurring with Norovirus Infection and Recovery in Infants Enrolled in a Longitudinal Birth Cohort in Leon, Nicaragua.
Cannon JL , Seabolt MH , Xu R , Montmayeur A , Suh SH , Diez-Valcarce M , Bucardo F , Becker-Dreps S , Vinjé J . Viruses 2022 14 (7)
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| Selective Whole-Genome Amplification as a Tool to Enrich Specimens with Low Treponema pallidum Genomic DNA Copies for Whole-Genome Sequencing.
Thurlow CM , Joseph SJ , Ganova-Raeva L , Katz SS , Pereira L , Chen C , Debra A , Vilfort K , Workowski K , Cohen SE , Reno H , Sun Y , Burroughs M , Sheth M , Chi KH , Danavall D , Philip SS , Cao W , Kersh EN , Pillay A . mSphere 2022 7 (3) e0000922
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| Association of Secretor Status and Recent Norovirus Infection With Gut Microbiome Diversity Metrics in a Veterans Affairs Population.
Johnson JA , Read TD , Petit RA3rd , Marconi VC , Meagley KL , Rodriguez-Barradas MC , Beenhouwer DO , Brown ST , Holodniy M , Lucero-Obusan CA , Schirmer P , Ingersoll JM , Kraft CS , Neill FH , Atmar RL , Kambhampati AK , Cates JE , Mirza SA , Hall AJ , Cardemil CV , Lopman BA . Open Forum Infect Dis 2022 9 (5) ofac125
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| Litter Commensal Bacteria Can Limit the Horizontal Gene Transfer of Antimicrobial Resistance to Salmonella in Chickens.
Oladeinde A , Abdo Z , Zwirzitz B , Woyda R , Lakin SM , Press MO , Cox NA , Thomas JCth , Looft T , Rothrock MJJr , Zock G , Plumblee Lawrence J , Cudnik D , Ritz C , Aggrey SE , Liachko I , Grove JR , Wiersma C . Appl Environ Microbiol 2022 88 (9) e0251721
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| Comprehensive characterization of internal and cuticle surface microbiota of laboratory-reared F Anopheles albimanus originating from different sites.
Dada N , Benedict AC , López F , Lol JC , Sheth M , Dzuris N , Padilla N , Lenhart A . Malar J 2021 20 (1) 414 |
| The Effect of Disinfectants on the Microbial Community on Environmental Healthcare Surfaces using Next Generation Sequencing.
Perry-Dow KA , de Man T , Halpin AL , Shams AM , Rose LJ , Noble-Wang JA . Am J Infect Control 2021 50 (1) 54-60
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| Microbial signatures in the lower airways of mechanically ventilated COVID-19 patients associated with poor clinical outcome.
Sulaiman I , Chung M , Angel L , Tsay JJ , Wu BG , Yeung ST , Krolikowski K , Li Y , Duerr R , Schluger R , Thannickal SA , Koide A , Rafeq S , Barnett C , Postelnicu R , Wang C , Banakis S , Pérez-Pérez L , Shen G , Jour G , Meyn P , Carpenito J , Liu X , Ji K , Collazo D , Labarbiera A , Amoroso N , Brosnahan S , Mukherjee V , Kaufman D , Bakker J , Lubinsky A , Pradhan D , Sterman DH , Weiden M , Heguy A , Evans L , Uyeki TM , Clemente JC , de Wit E , Schmidt AM , Shopsin B , Desvignes L , Wang C , Li H , Zhang B , Forst CV , Koide S , Stapleford KA , Khanna KM , Ghedin E , Segal LN . Nat Microbiol 2021 6 (10) 1245-1258 |
| Skin Metagenomic Sequence Analysis of Early Candida auris Outbreaks in U.S. Nursing Homes.
Huang X , Welsh RM , Deming C , Proctor DM , Thomas PJ , Gussin GM , Huang SS , Kong HH , Bentz ML , Vallabhaneni S , Chiller T , Jackson BR , Forsberg K , Conlan S , Litvintseva AP , Segre JA . mSphere 2021 6 (4) e0028721
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| Integrated genomic, epidemiologic investigation of Candida auris skin colonization in a skilled nursing facility.
Proctor DM , Dangana T , Sexton DJ , Fukuda C , Yelin RD , Stanley M , Bell PB , Baskaran S , Deming C , Chen Q , Conlan S , Park M , Welsh RM , Vallabhaneni S , Chiller T , Forsberg K , Black SR , Pacilli M , Kong HH , Lin MY , Schoeny ME , Litvintseva AP , Segre JA , Hayden MK . Nat Med 2021 27 (8) 1401-1409 |
| Constraining PERMANOVA and LDM to within-set comparisons by projection improves the efficiency of analyses of matched sets of microbiome data.
Zhu Z , Satten GA , Mitchell C , Hu YJ . Microbiome 2021 9 (1) 133 |
| Microbial community structure and composition is associated with host species and sex in Sigmodon cotton rats.
Strickland BA , Patel MC , Shilts MH , Boone HH , Kamali A , Zhang W , Stylos D , Boukhvalova MS , Rosas-Salazar C , Yooseph S , Rajagopala SV , Blanco JCG , Das SR . Anim Microbiome 2021 3 (1) 29 |
| American Academy of Optometry Microbial Keratitis Think Tank.
Szczotka-Flynn LB , Shovlin JP , Schnider CM , Caffery BE , Alfonso EC , Carnt NA , Chalmers RL , Collier S , Jacobs DS , Joslin CE , Kroken AR , Lakkis C , Pearlman E , Schein OD , Stapleton F , Tu E , Willcox MDP . Optom Vis Sci 2021 98 (3) 182-198 |
| The State of Microbiome Science at the Intersection of Infectious Diseases and Antimicrobial Resistance.
Ranallo RT , McDonald LC , Halpin AL , Hiltke T , Young VB . J Infect Dis 2021 223 S187-S193
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| Bacterial community assemblages in classroom floor dust of 50 public schools in a large city: characterization using 16S rRNA sequences and associations with environmental factors.
Park JH , Lemons AR , Roseman J , Green BJ , Cox-Ganser JM . Microbiome 2021 9 (1) 15 |
| Sensitive universal detection of blood parasites by selective pathogen-DNA enrichment and deep amplicon sequencing.
Flaherty BR , Barratt J , Lane M , Talundzic E , Bradbury RS . Microbiome 2021 9 (1) 1
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| Microbial communities and gene contributions in smokeless tobacco products.
Rivera AJ , Tyx RE , Keong LM , Stanfill SB , Watson CH . Appl Microbiol Biotechnol 2020 104 (24) 10613-10629 |
| The Role of the Gut Microbiome in Resisting Norovirus Infection as Revealed by a Human Challenge Study.
Patin NV , Peña-Gonzalez A , Hatt JK , Moe C , Kirby A , Konstantinidis KT . mBio 2020 11 (6)
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| A Bottom-up Approach to Testing Hypotheses That Have a Branching Tree Dependence Structure, with Error Rate Control.
Li Y , Hu YJ , Satten GA . J Am Stat Assoc 2020 117 (538) 664-677
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| STROBE-metagenomics: a STROBE extension statement to guide the reporting of metagenomics studies.
Bharucha T , Oeser C , Balloux F , Brown JR , Carbo EC , Charlett A , Chiu CY , Claas ECJ , de Goffau MC , de Vries JJC , Eloit M , Hopkins S , Huggett JF , MacCannell D , Morfopoulou S , Nath A , O'Sullivan DM , Reoma LB , Shaw LP , Sidorov I , Simner PJ , Van Tan L , Thomson EC , van Dorp L , Wilson MR , Breuer J , Field N . Lancet Infect Dis 2020 20 (10) e251-e260
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| Integrating population genetic structure, microbiome, and pathogens presence data in Dermacentor variabilis .
Lado P , Luan B , Allerdice MEJ , Paddock CD , Karpathy SE , Klompen H . PeerJ 2020 8 e9367
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- Page last reviewed:Feb 1, 2024
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