CDC-Authored Genomics and Precision Health Publications Database

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Last data update: Nov 04, 2024. (Total: 6390 publications)

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Records 1-30 (of 163 Records)

Query Trace: Food safety or foodborne[original query]
Conditional expression of flagellar motility, curli fimbriae, and biofilms in Shiga toxin- producing Escherichia albertii Carter MQ , Carychao D , Lindsey RL . Front Microbiol 2024 15 1456637
An outbreak investigation of Salmonella Weltevreden illnesses in the United States linked to frozen precooked shrimp imported from India - 2021 Jenkins E , Cripe J , Whitney BM , Greenlee T , Schneider B , Nguyen TA , Pightling A , Manetas J , Abraham A , Fox T , Mickelsen N , Priddy C , McMullen S , Crosby A , Viazis S . J Food Prot 2024 100360
Genetic diversity in Salmonella enterica in outbreaks of foodborne and zoonotic origin in the USA in 2006-2017 Trees E , Carleton HA , Folster JP , Gieraltowski L , Hise K , Leeper M , Nguyen TA , Poates A , Sabol A , Tagg KA , Tolar B , Vasser M , Webb HE , Wise M , Lindsey RL . Microorganisms 2024 12 (8)
Evaluation of coccidia DNA in irrigation pond water and wastewater sludge associated with Cyclospora cayetanensis 18S rRNA gene qPCR detections Hofstetter J , Arfken A , Kahler A , Qvarnstrom Y , Rodrigues C , Mattioli M . Microbiol Spectr 2024 e0090624
Syndromic gastrointestinal panel diagnostic tests have changed our understanding of the epidemiology of yersiniosis-Foodborne Diseases Active Surveillance Network, 2010-2021 Ray LC , Payne DC , Rounds J , Trevejo RT , Wilson E , Burzlaff K , Garman KN , Lathrop S , Rissman T , Wymore K , Wozny S , Wilson S , Francois Watkins LK , Bruce BB , Weller DL . Open Forum Infect Dis 2024 11 (6) ofae199
Evaluation of the increased genetic resolution and utility for source tracking of a recently developed method for genotyping cyclospora cayetanensis Leonard SR , Mammel MK , Almeria S , Gebru ST , Jacobson DK , Peterson AC , Barratt JLN , Musser SM . Microorganisms 2024 12 (5)
Evaluation of crAssphages as a potential marker of human viral contamination in environmental water and fresh leafy greens Suh SH , Lee JS , Kim SH , Vinjé J , Kim SH , Park GW . Front Microbiol 2024 15 1374568
Multistate nontyphoidal Salmonella and Shiga toxin-producing Escherichia coli outbreaks linked to international travel - United States, 2017-2020 Habrun CA , Birhane MG , François Watkins LK , Benedict K , Bottichio L , Nemechek K , Tolar B , Schroeder MN , Chen JC , Caidi H , Robyn M , Nichols M . Epidemiol Infect 2024 1-33
Genomic and phenotypic characterization of shiga toxin-producing Escherichia albertii strains isolated from wild birds in a major agricultural region in California Carter MQ , Quiñones B , He X , Pham A , Carychao D , Cooley MB , Lo CC , Chain PSG , Lindsey RL , Bono JL . Microorganisms 2023 11 (11)
Evaluation of whole and core genome multilocus sequence typing allele schemes for Salmonella enterica outbreak detection in a national surveillance network, PulseNet USA Leeper MM , Tolar BM , Griswold T , Vidyaprakash E , Hise KB , Williams GM , Im SB , Chen JC , Pouseele H , Carleton HA . Front Microbiol 2023 14 1254777
An improved framework for detecting discrete epidemiologically meaningful partitions in hierarchically clustered genetic data Jacobson DK , Low R , Plucinski MM , Barratt JLN . Bioinform Adv 2023 3 (1) vbad118
Predicting food sources of Listeria monocytogenes based on genomic profiling using random forest model Gu W , Cui Z , Stroika S , Carleton HA , Conrad A , Katz LS , Richardson LC , Hunter J , Click ES , Bruce BB . Foodborne Pathog Dis 2023 20 (12) 579-586
The limit of detection of the BioFire FilmArray gastrointestinal panel for the foodborne parasite Cyclospora cayetanensis Peterson A , Richins T , Houghton K , Mishina M , Sharma S , Sambhara S , Jacobson D , Qvarnstrom Y , Cama V . Diagn Microbiol Infect Dis 2023 107 (2) 116030
Evaluation of the Illumina iSeq whole genome sequencing system for enteric disease surveillance and outbreak detection Trees E , Poates A , Sabol A , LaFon P , Truong J , Lindsey R . J Microbiol Methods 2023 211 106784
Investigation of a multistate outbreak of Listeria monocytogenes infections linked to frozen vegetables produced at individually quick-frozen vegetable manufacturing facilities Madad A , Heiman Marshall K , Blessington T , Hardy C , Salter M , Basler C , Conrad A , Stroika S , Luo Y , Dwarka A , Gerhardt T , Rosa Y , Cibulskas K , Rosen HE , Adcock B , Kiang D , Hutton S , Parish M , Podoski B , Patel B , Viazis S . J Food Prot 2023 86 (8) 100117
Cyclospora cayetanensis comprises at least three species that cause human cyclosporiasis Barratt JLN , Shen J , Houghton K , Richins T , Sapp SGH , Cama V , Arrowood MJ , Straily A , Qvarnstrom Y . Parasitology 2023 150 (3) 269-285
Multinational outbreak of Listeria monocytogenes infections linked to enoki mushrooms imported from The Republic of Korea 2016-2020 Pereira E , Conrad A , Tesfai A , Palacios A , Kandar R , Kearney A , Locas A , Jamieson F , Elliot E , Otto M , Kurdilla K , Tijerina M , Son I , Pettengill JB , Chen Y , Fox T , Lane C , Aguillon R , Huffman J , Sheau Fong Low M , Wise M , Edwards L , Bidol S , Blankenship HM , Rosen HE , Leclercq A , Lecuit M , Tourdjman M , Herber H , Singleton LS , Viazis S , Bazaco MC . J Food Prot 2023 86 (7) 100101
Multistate outbreak of salmonella thompson infections linked to seafood exposure - United States, 2021 Shen AQ , Dalen A , Bankers L , Matzinger SR , Schwensohn C , Patel K , Hise KB , Pereira E , Cripe J , Jervis RH . MMWR Morb Mortal Wkly Rep 2023 72 (19) 513-516
Corrigendum: Whole Genome Sequencing: Bridging One-Health Surveillance of Foodborne Diseases. Gerner-Smidt P , Besser J , Concepción-Acevedo J , Folster JP , Huffman J , Joseph LA , Kucerova Z , Nichols MC , Schwensohn CA , Tolar B . Front Public Health 2019 7 365
Antimicrobial-resistant nontyphoidal Salmonella infection following international travel - United States, 2018-2019 Ford L , Shah HJ , Eikmeier D , Hanna S , Chen J , Tagg KA , Langley G , Payne DC , Plumb ID . J Infect Dis 2023 228 (5) 533-541
Evaluation of core genome and whole genome multilocus sequence typing schemes for Campylobacter jejuni and Campylobacter coli outbreak detection in the USA Joseph LA , Griswold T , Vidyaprakash E , Im SB , Williams GM , Pouseele HA , Hise KB , Carleton HA . Microb Genom 2023 9 (5)
Salmonella Outbreaks Linked to Beef, United States, 2012-2019. Canning M , Birhane MG , Dewey-Mattia D , Lawinger H , Cote A , Gieraltowski L , Schwensohn C , Tagg KA , Francois Watkins LK , Park Robyn M , Marshall KE . J Food Prot 2023 86 (5) 100071
An Overview of Foodborne Sample-Initiated Retrospective Outbreak Investigations and Interagency Collaboration in the United States. Wellman A , Bazaco M , Blessington T , Pightling A , Dwarka A , Hintz L , Wise ME , Gieraltowski L , Conrad A , Nguyen TA , Hise K , Viazis S , Beal J . J Food Prot 2023 86 (6) 100089
An Outbreak Investigation of Vibrio parahaemolyticus Infections in the United States Linked to Crabmeat Imported from Venezuela: 2018. Seelman SL , Whitney BM , Stokes EK , Elliot EL , Griswold T , Patel K , Bloodgood S , Jones JL , Cripe J , Cornell J , Luo Y , Williams DL , Boyle MM , Cahoon J , Brennan C , Wildey LM , Grover VM , Simonson S , Crosby AJ , Bazaco MC , Viazis S . Foodborne Pathog Dis 2023 20 (4) 123-131
Optimizing hierarchical tree dissection parameters using historic epidemiologic data as 'ground truth'. Jacobson D , Barratt J . PLoS One 2023 18 (2) e0282154
Draft Genome Sequences of 20 Clostridium botulinum Type A Isolates from Foodborne Botulism Outbreaks. Halpin JL , Gómez GA , Dykes JK , Lúquez C . Microbiol Resour Announc 2023 12 (1) e0086822
Horizontal Gene Transfer and Loss of Serotype-Specific Genes in Listeria monocytogenes Can Lead to Incorrect Serotype Designations with a Commonly-Employed Molecular Serotyping Scheme. Brown P , Kucerova Z , Gorski L , Chen Y , Ivanova M , Leekitcharoenphon P , Parsons C , Niedermeyer J , Jackson J , Kathariou S . Microbiol Spectr 2022 11 (1) e0274522
Bi-national Outbreak of Salmonella Newport Infections Linked to Onions: the United States Experience. McCormic ZD , Patel K , Higa J , Bancroft J , Donovan D , Edwards L , Cheng J , Adcock B , Bond C , Pereira E , Doyle M , Wise ME , Gieraltowski L . Epidemiol Infect 2022 150 1-23
Genomic Diversity, Antimicrobial Resistance, and Virulence Gene Profiles of Salmonella Serovar Kentucky Isolated from Humans, Food, and Animal Ceca Content Sources in the United States. Tate H , Hsu CH , Chen JC , Han J , Foley SL , Folster JP , Francois Watkins LK , Reynolds J , Tillman GE , Nyirabahizi E , Zhao S . Foodborne Pathog Dis 2022 19 (8) 509-521
The power, potential, benefits, and challenges of implementing high-throughput sequencing in food safety systems. Imanian B , Donaghy J , Jackson T , Gummalla S , Ganesan B , Baker RC , Henderson M , Butler EK , Hong Y , Ring B , Thorp C , Khaksar R , Samadpour M , Lawless KA , MacLaren-Lee I , Carleton HA , Tian R , Zhang W , Wan J . NPJ Sci Food 2022 6 (1) 35