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CDC-Authored Genomics and Precision Health Publications Database|Home|PHGKB

CDC-Authored Genomics and Precision Health Publications Database


Last data update: Sep 25, 2023. (Total: 4416 publications since 2011)
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Records 1-30 (of 99 Records)
Query Trace: Yu P[original query]
Association between SARS-CoV-2 variants and frequency of acute symptoms: Analysis of a multi-institutional prospective cohort study-December 20, 2020-June 20, 2022
Wang RC , Gottlieb M , Montoy JCC , Rodriguez RM , Yu H , Spatz ES , Chandler CW , Elmore JG , Hannikainen PA , Chang AM , Hill M , Huebinger RM , Idris AH , Koo K , Li SX , McDonald S , Nichol G , O'Laughlin KN , Plumb ID , Santangelo M , Saydah S , Stephens KA , Venkatesh AK , Weinstein RA .
Open Forum Infect Dis 2023 10 (7) ofad275
Genomic analysis of Clostridioides difficile in two regions of the United States reveals a diversity of strains and limited transmission.
Pecora N , Holzbauer S , Wang X , Gu Y , Taffner S , Hatwar T , Hardy D , Dziejman M , D'Heilly P , Pung K , Guh A , Qiu X , Gill S , Dumyati G .
J Infect Dis 2022 225 (1) 121-129
Gut Microbiome Composition and Metabolic Capacity Differ by FUT2 Secretor Status in Exclusively Breastfed Infants.
Thorman AW , Adkins G , Conrey SC , Burrell AR , Yu Y , White B , Burke R , Haslam D , Payne DC , Staat MA , Morrow AL , Newburg DS .
Nutrients 2023 15 (2)
Use of Wastewater for Mpox Outbreak Surveillance in California.
Wolfe MK , Yu AT , Duong D , Rane MS , Hughes B , Chan-Herur V , Donnelly M , Chai S , White BJ , Vugia DJ , Boehm AB .
N Engl J Med 2023
Maternal Periconceptional Folic Acid Supplementation and DNA Methylation Patterns in Adolescent Offspring.
Crider KS , Wang A , Ling H , Potischman N , Bailey RL , Lichen Y , Pfeiffer CM , Killian JK , Rose C , Sampson J , Zhu L , Berry RJ , Linet M , Yu W , Su LJ .
J Nutr 2023 152 (12) 2669-2676
COVID-19 Scientific Publications From the Centers for Disease Control and Prevention, January 2020-January 2022.
Meites E , Knuth M , Hall K , Dawson P , Wang TW , Wright M , Yu W , Senesie S , Stephenson E , Imachukwu C , Sayi T , Gurbaxani B , Svendsen ER , Khoury MJ , Ellis B , King BA .
Public Health Rep 2022 138 (2) 333549221134130 type
COVID-19-Related manuscripts: lag from preprint to publication.
Drzymalla E , Yu W , Khoury MJ , Gwinn M .
BMC Res Notes 2022 15 (1) 340 type
SARS-CoV-2 seroprevalence, cumulative infections, and immunity to symptomatic infection - A multistage national household survey and modelling study, Dominican Republic, June-October 2021.
Nilles Eric J, Paulino Cecilia Then, de St Aubin Michael, Restrepo Angela Cadavid, Mayfield Helen, Dumas Devan, Finch Emilie, Garnier Salome, Etienne Marie Caroline, Iselin Louisa, Duke William, Jarolim Petr, Oasan Timothy, Yu Jingyou, Wan Huahua, Peña Farah, Iihoshi Naomi, Abdalla Gabriela, Lopez Beatriz, Cruz Lucia de la, Henríquez Bernarda, Espinosa-Bode Andres, Puello Yosanly Cornelio, Durski Kara, Baldwin Margaret, Baez Amado Alejandro, Merchant Roland C, Barouch Dan H, Skewes-Ramm Ronald, Gutiérrez Emily Zielinski, Kucharski Adam, Lau Colleen L. Lancet regional health. Americas 2022 16100390 .
Lancet regional health. Americas 2022 16100390 type
Postexposure Prophylaxis and Treatment of Bacillus anthracis Infections: A Systematic Review and Meta-analyses of Animal Models, 1947-2019.
Kennedy JL , Bulitta JB , Chatham-Stephens K , Person MK , Cook R , Mongkolrattanothai T , Shin E , Yu P , Negron ME , Bower WA , Hendricks K .
Clin Infect Dis 2022 75 S379-s391
Orthopoxvirus Testing Challenges for Persons in Populations at Low Risk or Without Known Epidemiologic Link to Monkeypox - United States, 2022.
Minhaj FS , Petras JK , Brown JA , Mangla AT , Russo K , Willut C , Lee M , Beverley J , Harold R , Milroy L , Pope B , Gould E , Beeler C , Schneider J , Mostafa HH , Godfred-Cato S , Click ES , Borah BF , Galang RR , Cash-Goldwasser S , Wong JM , McCormick DW , Yu PA , Shelus V , Carpenter A , Schatzman S , Lowe D , Townsend MB , Davidson W , Wynn NT , Satheshkumar PS , O'Connor SM , O'Laughlin K , Rao AK , McCollum AM , Negrn ME , Hutson CL , Salzer JS .
MMWR Morb Mortal Wkly Rep 2022 71 (36) 1155-1158
Wastewater sequencing reveals early cryptic SARS-CoV-2 variant transmission.
Karthikeyan S , Levy JI , DeHoff P , Humphrey G , Birmingham A , Jepsen K , Farmer S , Tubb HM , Valles T , Tribelhorn CE , Tsai R , Aigner S , Sathe S , Moshiri N , Henson B , Mark AM , Hakim A , Baer NA , Barber T , Belda-Ferre P , Chacn M , Cheung W , Cresini ES , Eisner ER , Lastrella AL , Lawrence ES , Marotz CA , Ngo TT , Ostrander T , Plascencia A , Salido RA , Seaver P , Smoot EW , McDonald D , Neuhard RM , Scioscia AL , Satterlund AM , Simmons EH , Abelman DB , Brenner D , Bruner JC , Buckley A , Ellison M , Gattas J , Gonias SL , Hale M , Hawkins F , Ikeda L , Jhaveri H , Johnson T , Kellen V , Kremer B , Matthews G , McLawhon RW , Ouillet P , Park D , Pradenas A , Reed S , Riggs L , Sanders A , Sollenberger B , Song A , White B , Winbush T , Aceves CM , Anderson C , Gangavarapu K , Hufbauer E , Kurzban E , Lee J , Matteson NL , Parker E , Perkins SA , Ramesh KS , Robles-Sikisaka R , Schwab MA , Spencer E , Wohl S , Nicholson L , McHardy IH , Dimmock DP , Hobbs CA , Bakhtar O , Harding A , Mendoza A , Bolze A , Becker D , Cirulli ET , Isaksson M , SchiaborBarrett KM , Washington NL , Malone JD , Schafer AM , Gurfield N , Stous S , Fielding-Miller R , Garfein RS , Gaines T , Anderson C , Martin NK , Schooley R , Austin B , MacCannell DR , Kingsmore SF , Lee W , Shah S , McDonald E , Yu AT , Zeller M , Fisch KM , Longhurst C , Maysent P , Pride D , Khosla PK , Laurent LC , Yeo GW , Andersen KG , Knight R .
Nature 2022 609 (7925) 101-108 type
Divergent Rabies Virus Variant of Probable Bat Origin in 2 Gray Foxes, New Mexico, USA.
Condori Rene E, Aragon Adam, Breckenridge Mike, Pesko Kendra, Mower Kerry, Ettestad Paul, Melman Sandra, Velasco-Villa Andres, Orciari Lillian A, Yager Pamela, Streicker Daniel G, Gigante Crystal M, Morgan Clint, Wallace Ryan, Li Yu. Emerging infectious diseases 2022 28(6) 1137-1145 .
Emerging infectious diseases 2022 28(6) 1137-1145
COVID-19 GPH: tracking the contribution of genomics and precision health to the COVID-19 pandemic response.
Yu W , Drzymalla E , Gwinn M , Khoury MJ .
BMC Infect Dis 2022 22 (1) 402 type
Monkeypox in a Traveler Returning from Nigeria - Dallas, Texas, July 2021.
Rao AK , Schulte J , Chen TH , Hughes CM , Davidson W , Neff JM , Markarian M , Delea KC , Wada S , Liddell A , Alexander S , Sunshine B , Huang P , Honza HT , Rey A , Monroe B , Doty J , Christensen B , Delaney L , Massey J , Waltenburg M , Schrodt CA , Kuhar D , Satheshkumar PS , Kondas A , Li Y , Wilkins K , Sage KM , Yu Y , Yu P , Feldpausch A , McQuiston J , Damon IK , McCollum AM .
MMWR Morb Mortal Wkly Rep 2022 71 (14) 509-516
Evaluation of individual and ensemble probabilistic forecasts of COVID-19 mortality in the United States.
Cramer EY , Ray EL , Lopez VK , Bracher J , Brennen A , CastroRivadeneira AJ , Gerding A , Gneiting T , House KH , Huang Y , Jayawardena D , Kanji AH , Khandelwal A , Le K , Mhlemann A , Niemi J , Shah A , Stark A , Wang Y , Wattanachit N , Zorn MW , Gu Y , Jain S , Bannur N , Deva A , Kulkarni M , Merugu S , Raval A , Shingi S , Tiwari A , White J , Abernethy NF , Woody S , Dahan M , Fox S , Gaither K , Lachmann M , Meyers LA , Scott JG , Tec M , Srivastava A , George GE , Cegan JC , Dettwiller ID , England WP , Farthing MW , Hunter RH , Lafferty B , Linkov I , Mayo ML , Parno MD , Rowland MA , Trump BD , Zhang-James Y , Chen S , Faraone SV , Hess J , Morley CP , Salekin A , Wang D , Corsetti SM , Baer TM , Eisenberg MC , Falb K , Huang Y , Martin ET , McCauley E , Myers RL , Schwarz T , Sheldon D , Gibson GC , Yu R , Gao L , Ma Y , Wu D , Yan X , Jin X , Wang YX , Chen Y , Guo L , Zhao Y , Gu Q , Chen J , Wang L , Xu P , Zhang W , Zou D , Biegel H , Lega J , McConnell S , Nagraj VP , Guertin SL , Hulme-Lowe C , Turner SD , Shi Y , Ban X , Walraven R , Hong QJ , Kong S , vandeWalle A , Turtle JA , Ben-Nun M , Riley S , Riley P , Koyluoglu U , DesRoches D , Forli P , Hamory B , Kyriakides C , Leis H , Milliken J , Moloney M , Morgan J , Nirgudkar N , Ozcan G , Piwonka N , Ravi M , Schrader C , Shakhnovich E , Siegel D , Spatz R , Stiefeling C , Wilkinson B , Wong A , Cavany S , Espaa G , Moore S , Oidtman R , Perkins A , Kraus D , Kraus A , Gao Z , Bian J , Cao W , LavistaFerres J , Li C , Liu TY , Xie X , Zhang S , Zheng S , Vespignani A , Chinazzi M , Davis JT , Mu K , Pastore YPionttiA , Xiong X , Zheng A , Baek J , Farias V , Georgescu A , Levi R , Sinha D , Wilde J , Perakis G , Bennouna MA , Nze-Ndong D , Singhvi D , Spantidakis I , Thayaparan L , Tsiourvas A , Sarker A , Jadbabaie A , Shah D , DellaPenna N , Celi LA , Sundar S , Wolfinger R , Osthus D , Castro L , Fairchild G , Michaud I , Karlen D , Kinsey M , Mullany LC , Rainwater-Lovett K , Shin L , Tallaksen K , Wilson S , Lee EC , Dent J , Grantz KH , Hill AL , Kaminsky J , Kaminsky K , Keegan LT , Lauer SA , Lemaitre JC , Lessler J , Meredith HR , Perez-Saez J , Shah S , Smith CP , Truelove SA , Wills J , Marshall M , Gardner L , Nixon K , Burant JC , Wang L , Gao L , Gu Z , Kim M , Li X , Wang G , Wang Y , Yu S , Reiner RC , Barber R , Gakidou E , Hay SI , Lim S , Murray C , Pigott D , Gurung HL , Baccam P , Stage SA , Suchoski BT , Prakash BA , Adhikari B , Cui J , Rodrguez A , Tabassum A , Xie J , Keskinocak P , Asplund J , Baxter A , Oruc BE , Serban N , Arik SO , Dusenberry M , Epshteyn A , Kanal E , Le LT , Li CL , Pfister T , Sava D , Sinha R , Tsai T , Yoder N , Yoon J , Zhang L , Abbott S , Bosse NI , Funk S , Hellewell J , Meakin SR , Sherratt K , Zhou M , Kalantari R , Yamana TK , Pei S , Shaman J , Li ML , Bertsimas D , SkaliLami O , Soni S , TaziBouardi H , Ayer T , Adee M , Chhatwal J , Dalgic OO , Ladd MA , Linas BP , Mueller P , Xiao J , Wang Y , Wang Q , Xie S , Zeng D , Green A , Bien J , Brooks L , Hu AJ , Jahja M , McDonald D , Narasimhan B , Politsch C , Rajanala S , Rumack A , Simon N , Tibshirani RJ , Tibshirani R , Ventura V , Wasserman L , O'Dea EB , Drake JM , Pagano R , Tran QT , Ho LST , Huynh H , Walker JW , Slayton RB , Johansson MA , Biggerstaff M , Reich NG .
Proc Natl Acad Sci U S A 2022 119 (15) e2113561119 type
Notes from the Field: Early Evidence of the SARS-CoV-2 B.1.1.529 (Omicron) Variant in Community Wastewater - United States, November-December 2021.
Kirby AE , Welsh RM , Marsh ZA , Yu AT , Vugia DJ , Boehm AB , Wolfe MK , White BJ , Matzinger SR , Wheeler A , Bankers L , Andresen K , Salatas C , Gregory DA , Johnson MC , Trujillo M , Kannoly S , Smyth DS , Dennehy JJ , Sapoval N , Ensor K , Treangen T , Stadler LB , Hopkins L .
MMWR Morb Mortal Wkly Rep 2022 71 (3) 103-105 type
Editorial: Codon Usage and Dinucleotide Composition of Virus Genomes: From the Virus-Host Interaction to the Development of Vaccines.
Pint RM , Burns CC , Moratorio G .
Front Microbiol 2021 12 791750
Introduction, Transmission Dynamics, and Fate of Early SARS-CoV-2 Lineages in Santa Clara County, California.
Villarino E , Deng X , Kemper CA , Jorden MA , Bonin B , Rudman SL , Han GS , Yu G , Wang C , Federman S , Bushnell B , Wadford DA , Lin W , Tao Y , Paden CR , Bhatnagar J , MacCannell T , Tong S , Batson J , Chiu CY .
J Infect Dis 2021 224 (2) 207-217 type
Geographic distribution and genetic characterization of poxviruses from human infections in Georgia, 2009-2014.
Khmaladze E , Mauldin MR , Tsaguria D , Gavashelidze M , Sidamonidze K , Tevdoradze T , Li Y , Reynolds MG , Imnadze P , Nakazawa Y .
Arch Virol 2021 166 (6) 1729-1733
Loss of the virulence plasmid by Shigella sonnei promotes its interactions with CD207 and CD209 receptors
Wu BC , Olivia NA , Tembo JM , He YX , Zhang YM , Xue Y , Ye CL , Lv Y , Li WJ , Jiang LY , Huo XX , Sun ZY , Chen ZJ , Qin JC , Li AY , Park CG , Klena JD , Ding HH , Chen T .
J Med Microbiol 2021 70 (3)
Challenges and Opportunities for Communication about the Role of Genomics in Public Health.
Allen CG , Green RF , Bowen S , Dotson WD , Yu W , Khoury MJ .
Public Health Genomics 2021 24 1-7
Fatal Case of Chronic Jamestown Canyon Virus Encephalitis Diagnosed by Metagenomic Sequencing in Patient Receiving Rituximab.
Solomon IH , Ganesh VS , Yu G , Deng XD , Wilson MR , Miller S , Milligan TA , Mukerji SS , Mathewson A , Linxweiler J , Morse D , Ritter JM , Staples JE , Hughes H , Gould CV , Sabeti PC , Chiu CY , Piantadosi A .
Emerg Infect Dis 2021 27 (1) 238-42
Evaluation of Two Real-Time, TaqMan Reverse Transcription-PCR Assays for Detection of Rabies Virus in Circulating Variants from Argentina: Influence of Sequence Variation.
Caraballo DA , Lombardo MA , Becker P , Sabio MS , Lema C , Martnez LM , Beltrn FJ , Li Y , Cisterna DM .
Viruses 2020 13 (1)
Timely Intervention and Control of a Novel Coronavirus (COVID-19) Outbreak at a Large Skilled Nursing Facility - San Francisco, California, 2020.
Karmarkar E , Blanco I , Amornkul P , DuBois A , Deng X , Moonan PK , Rubenstein BL , Miller DA , Kennedy I , Yu J , Dauterman J , Ongpin M , Hathaway W , Hoo L , Trammell S , Ememu E , Yu G , Khwaja Z , Lu W , Talai N , Jain S , Louie J , Philip S , Federman S , Masinde G , Wadford DA , Bobba N , Stoltey J , Smith A , Epson E , Chiu C , Bennett A , Vasquez AM , Williams T .
Infect Control Hosp Epidemiol 2020 42 (10) 1-20 type
Portable Rabies Virus Sequencing in Canine Rabies Endemic Countries Using the Oxford Nanopore MinION.
Gigante CM , Yale G , Condori RE , Costa NC , Long NV , Minh PQ , Chuong VD , Tho ND , Thanh NT , Thin NX , Hanh NTH , Wambura G , Ade F , Mito O , Chuchu V , Muturi M , Mwatondo A , Hampson K , Thumbi SM , Thomae BG , dePaz VH , Meneses S , Munyua P , Moran D , Cadena L , Gibson A , Wallace RM , Pieracci EG , Li Y .
Viruses 2020 12 (11)
Exportation of Monkeypox virus from the African continent.
Mauldin MR , McCollum AM , Nakazawa YJ , Mandra A , Whitehouse ER , Davidson W , Zhao H , Gao J , Li Y , Doty J , Yinka-Ogunleye A , Akinpelu A , Aruna O , Naidoo D , Lewandowski K , Afrough B , Graham V , Aarons E , Hewson R , Vipond R , Dunning J , Chand M , Brown C , Cohen-Gihon I , Erez N , Shifman O , Israeli O , Sharon M , Schwartz E , Beth-Din A , Zvi A , Mak TM , Ng YK , Cui L , Lin RTP , Olson VA , Brooks T , Paran N , Ihekweazu C , Reynolds MG .
J Infect Dis 2020 225 (8) 1367-1376
2020 taxonomic update for phylum Negarnaviricota (Riboviria: Orthornavirae), including the large orders Bunyavirales and Mononegavirales.
Kuhn JH , Adkins S , Alioto D , Alkhovsky SV , Amarasinghe GK , Anthony SJ , Avi-upanc T , Aylln MA , Bahl J , Balkema-Buschmann A , Ballinger MJ , Bartonika T , Basler C , Bavari S , Beer M , Bente DA , Bergeron , Bird BH , Blair C , Blasdell KR , Bradfute SB , Breyta R , Briese T , Brown PA , Buchholz UJ , Buchmeier MJ , Bukreyev A , Burt F , Buzkan N , Calisher CH , Cao M , Casas I , Chamberlain J , Chandran K , Charrel RN , Chen B , Chiumenti M , Choi IR , Clegg JCS , Crozier I , daGraa JV , DalB E , Dvila AMR , delaTorre JC , deLamballerie X , deSwart RL , DiBello PL , DiPaola N , DiSerio F , Dietzgen RG , Digiaro M , Dolja VV , Dolnik O , Drebot MA , Drexler JF , Drrwald R , Dufkova L , Dundon WG , Duprex WP , Dye JM , Easton AJ , Ebihara H , Elbeaino T , Ergnay K , Fernandes J , Fooks AR , Formenty PBH , Forth LF , Fouchier RAM , Freitas-Asta J , Gago-Zachert S , Go GF , Garca ML , Garca-Sastre A , Garrison AR , Gbakima A , Goldstein T , Gonzalez JJ , Griffiths A , Groschup MH , Gnther S , Guterres A , Hall RA , Hammond J , Hassan M , Hepojoki J , Hepojoki S , Hetzel U , Hewson R , Hoffmann B , Hongo S , Hper D , Horie M , Hughes HR , Hyndman TH , Jambai A , Jardim R , Jing D , Jin Q , Jonson GB , Junglen S , Karada S , Keller KE , Klempa B , Klingstrm J , Kobinger G , Kond H , Koonin EV , Krupovic M , Kurath G , Kuzmin IV , Laenen L , Lamb RA , Lambert AJ , Langevin SL , Lee B , Lemos ERS , Leroy EM , Li D , L J , Liang M , Li W , Li Y , Lukashevich IS , Maes P , MarcieldeSouza W , Marklewitz M , Marshall SH , Martelli GP , Martin RR , Marzano SL , Massart S , McCauley JW , Mielke-Ehret N , Minafra A , Minutolo M , Mirazimi A , Mhlbach HP , Mhlberger E , Naidu R , Natsuaki T , Navarro B , Navarro JA , Netesov SV , Neumann G , Nowotny N , Nunes MRT , Nylund A , kland AL , Oliveira RC , Palacios G , Pallas V , Plyi B , Papa A , Parrish CR , Pauvolid-Corra A , Pawska JT , Payne S , Prez DR , Pfaff F , Radoshitzky SR , Rahman AU , Ramos-Gonzlez PL , Resende RO , Reyes CA , Rima BK , Romanowski V , RoblesLuna G , Rota P , Rubbenstroth D , Runstadler JA , Ruzek D , Sabanadzovic S , Salt J , Sall AA , Salvato MS , Sarpkaya K , Sasaya T , Schwemmle M , Shabbir MZ , Sh X , Sh Z , Shirako Y , Simmonds P , irmarov J , Sironi M , Smither S , Smura T , Song JW , Spann KM , Spengler JR , Stenglein MD , Stone DM , Strakov P , Takada A , Tesh RB , Thornburg NJ , Tomonaga K , Tordo N , Towner JS , Turina M , Tzanetakis I , Ulrich RG , Vaira AM , vandenHoogen B , Varsani A , Vasilakis N , Verbeek M , Wahl V , Walker PJ , Wang H , Wang J , Wang X , Wang LF , Wi T , Wells H , Whitfield AE , Williams JV , Wolf YI , W Z , Yang X , Yng X , Yu X , Yutin N , Zerbini FM , Zhang T , Zhang YZ , Zhou G , Zhou X .
Arch Virol 2020 165 (12) 3023-3072
Modeling the potential impact of administering vaccines against Clostridioides difficile infection to individuals in healthcare facilities.
Toth DJA , Keegan LT , Samore MH , Khader K , O'Hagan JJ , Yu H , Quintana A , Swerdlow DL .
Vaccine 2020 38 (37) 5927-5932
The origins and genomic diversity of American Civil War Era smallpox vaccine strains.
Duggan AT , Klunk J , Porter AF , Dhody AN , Hicks R , Smith GL , Humphreys M , McCollum AM , Davidson WB , Wilkins K , Li Y , Burke A , Polasky H , Flanders L , Poinar D , Raphenya AR , Lau TTY , Alcock B , McArthur AG , Golding GB , Holmes EC , Poinar HN .
Genome Biol 2020 21 (1) 175
Application of Next-Generation Sequencing to Reveal How Evolutionary Dynamics of Viral Population Shape Dengue Epidemiology.
Ko HY , Salem GM , Chang GJ , Chao DY .
Front Microbiol 2020 11 1371
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