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CDC-Authored Genomics and Precision Health Publications Database|Home|Public Health Genomics and Precision Health Knowledge Base (PHGKB)

CDC-Authored Genomics and Precision Health Publications Database


Last data update: May 12, 2025. (Total: 6675 publications)
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Records 1-30 (of 35 Records)
Query Trace: Whitmer S[original query]
Use of the Chainchecker application: Uganda's experience during the 2022 Sudan Virus Disease outbreak
Akunzirwe R , Whitmer S , Stewart M , Harris JR , Wanyana MW , Ahirirwe SR , Ario AR , Kadobera D , Kwesiga B , Migisha R , Rajan A , Stock N , Eng J , Klena JD , Shoemaker T , Montgomery J , Choi M .
PLOS Glob Public Health 2025 5 (4) e0004352 type
Development of a culture-independent whole-genome sequencing of Nipah virus using the MinION Oxford Nanopore platform
Rahman MM , Miah M , Hossain ME , Rahim S , Sultana S , Satter SM , Islam A , Whitmer SLM , Epstein JH , Spiropoulou CF , Klena JD , Shirin T , Montgomery JM , Kaczmarek ME , Rahman MZ , Jahid IK .
Microbiol Spectr 2025 e0249224 type
Metagenomic Identification of Fusarium solani Strain as Cause of US Fungal Meningitis Outbreak Associated with Surgical Procedures in Mexico, 2023
Chiu CY , Servellita V , de Lorenzi-Tognon M , Benoit P , Sumimoto N , Foresythe A , Cerqueira FM , Williams-Bouyer N , Ren P , Herrera LNS , Gaston DC , Sayyad L , Whitmer SL , Klena J , Vikram HR , Gold JAW , Gade L , Parnell L , Misas E , Chiller TM , Griffin IS , Basavaraju SV , Smith DJ , Litvintseva AP , Chow NA .
Emerg Infect Dis 2025 31 (5) type
Bayou hantavirus cardiopulmonary syndrome, Louisiana, USA, 2022-2023
Ortega E , Simonson S , Shedroff E , Whitmer S , Whitesell A , Choi MJ , Shoemaker T , Montgomery JM , Klena JD , Hennig J , Sokol T .
Emerg Infect Dis 2025 31 (2) 401-403
Completed genome segments of Maciel, Lechiguanas, and Laguna Negra orthohantaviruses
Shedroff E , Whitmer SLM , Mobley M , Morales-Betoulle M , Martin ML , Brignone J , Sen C , Nazar Y , Montgomery JM , Klena JD .
Microbiol Resour Announc 2024 e0044124 type
Crimean-Congo hemorrhagic fever cases diagnosed during an outbreak of Sudan virus disease in Uganda, 2022-23
Balinandi S , Mulei S , Whitmer S , Nyakarahuka L , Cossaboom CM , Shedroff E , Morales-Betoulle M , Krapiunaya I , Tumusiime A , Kyondo J , Baluku J , Namanya D , Torach CR , Mutesi J , Kiconco J , Pimundu G , Muyigi T , Rowland J , Nsawotebba A , Ssewanyana I , Muwanguzi D , Kadobera D , Harris JR , Ario AR , Atek K , Kyobe HB , Nabadda S , Kaleebu P , Mwebesa HG , Montgomery JM , Shoemaker TR , Lutwama JJ , Klena JD .
PLoS Negl Trop Dis 2024 18 (10) e0012595 type
Fatal meningoencephalitis associated with Ebola virus persistence in two survivors of Ebola virus disease in the Democratic Republic of the Congo: a case report study
Mukadi-Bamuleka D , Edidi-Atani F , Morales-Betoulle ME , Legand A , Nkuba-Ndaye A , Bulabula-Penge J , Mbala-Kingebeni P , Crozier I , Mambu-Mbika F , Whitmer S , Tshiani Mbaya O , Hensley LE , Kitenge-Omasumbu R , Davey R , Mulangu S , Fonjungo PN , Wiley MR , Klena JD , Peeters M , Delaporte E , van Griensven J , Ariën KK , Pratt C , Montgomery JM , Formenty P , Muyembe-Tamfum JJ , Ahuka-Mundeke S .
Lancet Microbe 2024 100905 type
Human Orthohantavirus disease prevalence and genotype distribution in the U.S., 2008–2020: a retrospective observational study
Whitmer SLM , Whitesell A , Mobley M , Talundzic E , Shedroff E , Cossaboom CM , Messenger S , Deldari M , Bhatnagar J , Estetter L , Zufan S , Cannon D , Chiang CF , Gibbons A , Krapiunaya I , Morales-Betoulle M , Choi M , Knust B , Amman B , Montgomery JM , Shoemaker T , Klena JD .
Lancet Reg Health - Am 2024 37 type
Sudan virus disease super-spreading, Uganda, 2022
Komakech A , Whitmer S , Izudi J , Kizito C , Ninsiima M , Ahirirwe SR , Kabami Z , Ario AR , Kadobera D , Kwesiga B , Gidudu S , Migisha R , Makumbi I , Eurien D , Kayiwa J , Bulage L , Gonahasa DN , Kyamwine I , Okello PE , Nansikombi HT , Atuhaire I , Asio A , Elayeete S , Nsubuga EJ , Masanja V , Migamba SM , Mwine P , Nakamya P , Nampeera R , Kwiringira A , Akunzirwe R , Naiga HN , Namubiru SK , Agaba B , Zalwango JF , Zalwango MG , King P , Simbwa BN , Zavuga R , Wanyana MW , Kiggundu T , Oonyu L , Ndyabakira A , Komugisha M , Kibwika B , Ssemanda I , Nuwamanya Y , Kamukama A , Aanyu D , Kizza D , Ayen DO , Mulei S , Balinandi S , Nyakarahuka L , Baluku J , Kyondo J , Tumusiime A , Aliddeki D , Masiira B , Muwanguzi E , Kimuli I , Bulwadda D , Isabirye H , Aujo D , Kasambula A , Okware S , Ochien E , Komakech I , Okot C , Choi M , Cossaboom CM , Eggers C , Klena JD , Osinubi MO , Sadigh KS , Worrell MC , Boore AL , Shoemaker T , Montgomery JM , Nabadda SN , Mwanga M , Muruta AN , Harris JR .
BMC Infect Dis 2024 24 (1) 520 type
Sosuga virus detected in Egyptian rousette bats (Rousettus aegyptiacus) in Sierra Leone
Amman BR , Koroma AH , Schuh AJ , Conteh I , Sealy TK , Foday I , Johnny J , Bakarr IA , Whitmer SLM , Wright EA , Gbakima AA , Graziano J , Bangura C , Kamanda E , Osborne A , Saidu E , Musa JA , Bangura DF , Williams SMT , Fefegula GM , Sumaila C , Jabaty J , James FH , Jambai A , Garnett K , Kamara TF , Towner JS , Lebbie A .
Viruses 2024 16 (4) type
Case of human orthohantavirus infection, Michigan, USA, 2021
Goodfellow SM , Nofchissey RA , Arsnoe D , Ye C , Lee S , Park J , Kim WK , Chandran K , Whitmer SLM , Klena JD , Dyal JW , Shoemaker T , Riner D , Stobierski MG , Signs K , Bradfute SB .
Emerg Infect Dis 2024 30 (4) 817-821 type
Crimean-Congo hemorrhagic fever virus diversity and reassortment, Pakistan, 2017-2020
Umair M , Rehman Z , Whitmer S , Mobley M , Fahim A , Ikram A , Salman M , Montgomery JM , Klena JD .
Emerg Infect Dis 2024 30 (4) 654-664 type
Novel Oliveros-like Clade C mammarenaviruses from rodents in Argentina, 1990-2020
Shedroff E , Martin ML , Whitmer SLM , Brignone J , Garcia JB , Sen C , Nazar Y , Fabbri C , Morales-Betoulle M , Mendez J , Montgomery J , Morales MA , Klena JD .
Viruses 2024 16 (3) type
2020 Ebola virus disease outbreak in Équateur Province, Democratic Republic of the Congo: a retrospective genomic characterisation
Kinganda-Lusamaki E , Whitmer S , Lokilo-Lofiko E , Amuri-Aziza A , Muyembe-Mawete F , Makangara-Cigolo JC , Makaya G , Mbuyi F , Whitesell A , Kallay R , Choi M , Pratt C , Mukadi-Bamuleka D , Kavunga-Membo H , Matondo-Kuamfumu M , Mambu-Mbika F , Ekila-Ifinji R , Shoemaker T , Stewart M , Eng J , Rajan A , Soke GN , Fonjungo PN , Otshudiema JO , Folefack GLT , Pukuta-Simbu E , Talundzic E , Shedroff E , Bokete JL , Legand A , Formenty P , Mores CN , Porzucek AJ , Tritsch SR , Kombe J , Tshapenda G , Mulangu F , Ayouba A , Delaporte E , Peeters M , Wiley MR , Montgomery JM , Klena JD , Muyembe-Tamfum JJ , Ahuka-Mundeke S , Mbala-Kingebeni P .
Lancet Microbe 2024 type
HantaNet: A new microbetrace application for hantavirus classification, genomic surveillance, epidemiology and outbreak investigations
Cintron R , Whitmer SLM , Moscoso E , Campbell EM , Kelly R , Talundzic E , Mobley M , Chiu KW , Shedroff E , Shankar A , Montgomery JM , Klena JD , Switzer WM .
Viruses 2023 15 (11) type
Molecular characterization of the 2022 Sudan virus disease outbreak in Uganda
Balinandi S , Whitmer S , Mulei S , Nassuna C , Pimundu G , Muyigi T , Kainulainen M , Shedroff E , Krapiunaya I , Scholte F , Nyakarahuka L , Tumusiime A , Kyondo J , Baluku J , Kiconco J , Harris JR , Ario AR , Kagirita A , Bosa HK , Ssewanyana I , Nabadda S , Mwebesa HG , Aceng JR , Atwine D , Lutwama JJ , Shoemaker TR , Montgomery JM , Kaleebu P , Klena JD .
J Virol 2023 97 (10) e0059023 type
Rio Negro virus infection, Bolivia, 2021
Loayza Mafayle R , Morales-Betoulle ME , Whitmer S , Cossaboom C , Revollo J , Loayza NM , Méndez HA , Chuquimia Valdez JA , Subieta FA , Espinoza Morales MX , Canedo Sánchez MV , Romero MER , Brault AC , Hugues HR , Mendez-Rico J , Malenfant JH , Shoemaker T , Klena JD , Montgomery JM , Marquina Salas JD .
Emerg Infect Dis 2023 29 (8) 1705-1708
New Lineage of Lassa Virus, Togo, 2016.
Whitmer SLM , Strecker T , Cadar D , Dienes HP , Faber K , Patel K , Brown SM , Davis WG , Klena JD , Rollin PE , Schmidt-Chanasit J , Fichet-Calvet E , Noack B , Emmerich P , Rieger T , Wolff S , Fehling SK , Eickmann M , Mengel JP , Schultze T , Hain T , Ampofo W , Bonney K , Aryeequaye JND , Ribner B , Varkey JB , Mehta AK , Lyon GM 3rd , Kann G , De Leuw P , Schuettfort G , Stephan C , Wieland U , Fries JWU , Kochanek M , Kraft CS , Wolf T , Nichol ST , Becker S , Ströher U , Günther S .
Emerg Infect Dis 2018 24 (3) 599-602 type
Chapare Hemorrhagic Fever and Virus Detection in Rodents in Bolivia in 2019.
LoayzaMafayle R , Morales-Betoulle ME , Romero C , Cossaboom CM , Whitmer S , AlvarezAguilera CE , AvilaArdaya C , CruzZambrana M , DvalosAnajia A , MendozaLoayza N , Montao AM , MoralesAlvis FL , RevolloGuzmn J , SasasMartnez S , AlarcnDeLaVega G , MedinaRamrez A , MolinaGutirrez JT , CornejoPinto AJ , SalasBacci R , Brignone J , Garcia J , Aez A , Mendez-Rico J , Luz K , Segales A , TorrezCruz KM , Valdivia-Cayoja A , Amman BR , Choi MJ , Erickson BR , Goldsmith C , Graziano JC , Joyce A , Klena JD , Leach A , Malenfant JH , Nichol ST , Patel K , Sealy T , Shoemaker T , Spiropoulou CF , Todres A , Towner JS , Montgomery JM .
N Engl J Med 2022 386 (24) 2283-2294 type
Clinical and Molecular Epidemiology of Crimean-Congo Hemorrhagic Fever in Humans in Uganda, 2013-2019.
Balinandi S , Whitmer S , Mulei S , Nyakarahuka L , Tumusiime A , Kyondo J , Baluku J , Mutyaba J , Mugisha L , Malmberg M , Lutwama J , Shoemaker T , Klena J .
Am J Trop Med Hyg 2021 106 (1) 88-98 type
Inference of Nipah virus evolution, 1999-2015.
Whitmer SLM , Lo MK , Sazzad HMS , Zufan S , Gurley ES , Sultana S , Amman B , Ladner JT , Rahman MZ , Doan S , Satter SM , Flora MS , Montgomery JM , Nichol ST , Spiropoulou CF , Klena JD .
Virus Evol 2021 7 (1) veaa062 type
Whole-genome sequencing of SARS-CoV-2 reveals the detection of G614 variant in Pakistan.
Umair M , Ikram A , Salman M , Khurshid A , Alam M , Badar N , Suleman R , Tahir F , Sharif S , Montgomery J , Whitmer S , Klena J .
PLoS One 2021 16 (3) e0248371 type
Seoul virus infection and spread in US home-based ratteries-rat and human testing results from a multistate outbreak investigation.
Knust B , Brown S , de St Maurice A , Whitmer S , Koske SE , Ervin E , Patel K , Graziano J , Morales-Betoulle ME , House J , Cannon D , Kerins J , Holzbauer S , Austin C , Gibbons-Burgener S , Colton L , Dunn J , Zufan S , Choi MJ , Davis WR , Chiang CF , Manning CR , Roesch L , Shoemaker T , Purpura L , McQuiston J , Peterson D , Radcliffe R , Garvey A , Christel E , Morgan L , Scheftel J , Kazmierczak J , Klena JD , Nichol ST , Rollin PE .
J Infect Dis 2020 222 (8) 1311-1319 type
Inhibition of Nipah Virus by Defective Interfering Particles.
Welch SR , Tilston NL , Lo MK , Whitmer SLM , Harmon JR , Scholte FEM , Spengler JR , Duprex WP , Nichol ST , Spiropoulou CF .
J Infect Dis 2020 221 S460-S470 type
Comprehensive Clinical and Laboratory Follow-up of a Female Patient With Ebola Virus Disease: Sierra Leone Ebola Virus Persistence Study.
Liu WJ , Sesay FR , Coursier A , Knust B , Marrinan JE , Whitmer S , McDonald SLR , Gaillard P , Liu Y , Su Q , Zhang Y , Crozier I , Ariyarajah A , Carino M , Massaquoi T , Broutet N , Xu W , Wu G , Stroher U , Gao GF , Formenty P , Sahr F , Deen GF .
Open Forum Infect Dis 2019 6 (3) ofz068 type
Characterization of Novel Reoviruses [Wad Medani virus (Orbivirus) and Kundal (Coltivirus)] collected from Hyalomma antolicum ticks in India during CCHF surveillance.
Yadav PD , Whitmer SLM , Sarkale P , Ng TFF , Goldsmith CS , Nyayanit DA , Esona MD , Shrivastava-Ranjan P , Lakra R , Pardeshi P , Majumdar TD , Francis A , Klena JD , Nichol ST , Stroher U , Mourya D .
J Virol 2019 93 (13)
Introduction of Ebola virus into a remote border district of Sierra Leone, 2014: use of field epidemiology and RNA sequencing to describe chains of transmission.
DeSilva MB , Styles T , Basler C , Moses FL , Husain F , Reichler M , Whitmer S , McAuley J , Belay E , Friedman M , Muoghalu IS , Swaray P , Stroher U , Redd JT .
Epidemiol Infect 2019 147 e88 type
First Laboratory-Confirmed Outbreak of Human and Animal Rift Valley Fever Virus in Uganda in 48 Years.
Shoemaker TR , Nyakarahuka L , Balinandi S , Ojwang J , Tumusiime A , Mulei S , Kyondo J , Lubwama B , Sekematte M , Namutebi A , Tusiime P , Monje F , Mayanja M , Ssendagire S , Dahlke M , Kyazze S , Wetaka M , Makumbi I , Borchert J , Zufan S , Patel K , Whitmer S , Brown S , Davis WG , Klena JD , Nichol ST , Rollin PE , Lutwama J .
Am J Trop Med Hyg 2019 100 (3) 659-671 type
Characterization of Unknown Orthobunya-Like Viruses from India.
Whitmer SLM , Yadav PD , Sarkale P , Chaubal GY , Francis A , Klena J , Nichol ST , Stroher U , Mourya DT .
Viruses 2018 10 (9) type
Active Ebola Virus Replication and Heterogeneous Evolutionary Rates in EVD Survivors.
Whitmer SLM , Ladner JT , Wiley MR , Patel K , Dudas G , Rambaut A , Sahr F , Prieto K , Shepard SS , Carmody E , Knust B , Naidoo D , Deen G , Formenty P , Nichol ST , Palacios G , Stroher U .
Cell Rep 2018 22 (5) 1159-1168 type
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