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CDC-Authored Genomics and Precision Health Publications Database|Home|PHGKB

CDC-Authored Genomics and Precision Health Publications Database


Last data update: Dec 04, 2023. (Total: 4781 publications since 2011)
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Records 1-21 (of 21 Records)
Query Trace: Whitmer S[original query]
HantaNet: A new microbetrace application for hantavirus classification, genomic surveillance, epidemiology and outbreak investigations
Cintron R , Whitmer SLM , Moscoso E , Campbell EM , Kelly R , Talundzic E , Mobley M , Chiu KW , Shedroff E , Shankar A , Montgomery JM , Klena JD , Switzer WM .
Viruses 2023 15 (11)
Molecular characterization of the 2022 Sudan virus disease outbreak in Uganda
Balinandi S , Whitmer S , Mulei S , Nassuna C , Pimundu G , Muyigi T , Kainulainen M , Shedroff E , Krapiunaya I , Scholte F , Nyakarahuka L , Tumusiime A , Kyondo J , Baluku J , Kiconco J , Harris JR , Ario AR , Kagirita A , Bosa HK , Ssewanyana I , Nabadda S , Mwebesa HG , Aceng JR , Atwine D , Lutwama JJ , Shoemaker TR , Montgomery JM , Kaleebu P , Klena JD .
J Virol 2023 e0059023 type
Rio Negro virus infection, Bolivia, 2021
Loayza Mafayle R , Morales-Betoulle ME , Whitmer S , Cossaboom C , Revollo J , Loayza NM , Mndez HA , Chuquimia Valdez JA , Subieta FA , Espinoza Morales MX , Canedo Snchez MV , Romero MER , Brault AC , Hugues HR , Mendez-Rico J , Malenfant JH , Shoemaker T , Klena JD , Montgomery JM , Marquina Salas JD .
Emerg Infect Dis 2023 29 (8) 1705-1708
Chapare Hemorrhagic Fever and Virus Detection in Rodents in Bolivia in 2019.
LoayzaMafayle R , Morales-Betoulle ME , Romero C , Cossaboom CM , Whitmer S , AlvarezAguilera CE , AvilaArdaya C , CruzZambrana M , DvalosAnajia A , MendozaLoayza N , Montao AM , MoralesAlvis FL , RevolloGuzmn J , SasasMartnez S , AlarcnDeLaVega G , MedinaRamrez A , MolinaGutirrez JT , CornejoPinto AJ , SalasBacci R , Brignone J , Garcia J , Aez A , Mendez-Rico J , Luz K , Segales A , TorrezCruz KM , Valdivia-Cayoja A , Amman BR , Choi MJ , Erickson BR , Goldsmith C , Graziano JC , Joyce A , Klena JD , Leach A , Malenfant JH , Nichol ST , Patel K , Sealy T , Shoemaker T , Spiropoulou CF , Todres A , Towner JS , Montgomery JM .
N Engl J Med 2022 386 (24) 2283-2294 type
Clinical and Molecular Epidemiology of Crimean-Congo Hemorrhagic Fever in Humans in Uganda, 2013-2019.
Balinandi S , Whitmer S , Mulei S , Nyakarahuka L , Tumusiime A , Kyondo J , Baluku J , Mutyaba J , Mugisha L , Malmberg M , Lutwama J , Shoemaker T , Klena J .
Am J Trop Med Hyg 2021 106 (1) 88-98 type
Inference of Nipah virus evolution, 1999-2015.
Whitmer SLM , Lo MK , Sazzad HMS , Zufan S , Gurley ES , Sultana S , Amman B , Ladner JT , Rahman MZ , Doan S , Satter SM , Flora MS , Montgomery JM , Nichol ST , Spiropoulou CF , Klena JD .
Virus Evol 2021 7 (1) veaa062 type
Whole-genome sequencing of SARS-CoV-2 reveals the detection of G614 variant in Pakistan.
Umair M , Ikram A , Salman M , Khurshid A , Alam M , Badar N , Suleman R , Tahir F , Sharif S , Montgomery J , Whitmer S , Klena J .
PLoS One 2021 16 (3) e0248371 type
Seoul virus infection and spread in US home-based ratteries-rat and human testing results from a multistate outbreak investigation.
Knust B , Brown S , deStMaurice A , Whitmer S , Koske SE , Ervin E , Patel K , Graziano J , Morales-Betoulle ME , House J , Cannon D , Kerins J , Holzbauer S , Austin C , Gibbons-Burgener S , Colton L , Dunn J , Zufan S , Choi MJ , Davis WR , Chiang CF , Manning CR , Roesch L , Shoemaker T , Purpura L , McQuiston J , Peterson D , Radcliffe R , Garvey A , Christel E , Morgan L , Scheftel J , Kazmierczak J , Klena JD , Nichol ST , Rollin PE .
J Infect Dis 2020 222 (8) 1311-1319 type
Inhibition of Nipah Virus by Defective Interfering Particles.
Welch SR , Tilston NL , Lo MK , Whitmer SLM , Harmon JR , Scholte FEM , Spengler JR , Duprex WP , Nichol ST , Spiropoulou CF .
J Infect Dis 2020 221 S460-S470 type
Comprehensive Clinical and Laboratory Follow-up of a Female Patient With Ebola Virus Disease: Sierra Leone Ebola Virus Persistence Study.
Liu WJ , Sesay FR , Coursier A , Knust B , Marrinan JE , Whitmer S , McDonald SLR , Gaillard P , Liu Y , Su Q , Zhang Y , Crozier I , Ariyarajah A , Carino M , Massaquoi T , Broutet N , Xu W , Wu G , Stroher U , Gao GF , Formenty P , Sahr F , Deen GF .
Open Forum Infect Dis 2019 6 (3) ofz068 type
Characterization of Novel Reoviruses [Wad Medani virus (Orbivirus) and Kundal (Coltivirus)] collected from Hyalomma antolicum ticks in India during CCHF surveillance.
Yadav PD , Whitmer SLM , Sarkale P , Ng TFF , Goldsmith CS , Nyayanit DA , Esona MD , Shrivastava-Ranjan P , Lakra R , Pardeshi P , Majumdar TD , Francis A , Klena JD , Nichol ST , Stroher U , Mourya D .
J Virol 2019 93 (13)
Introduction of Ebola virus into a remote border district of Sierra Leone, 2014: use of field epidemiology and RNA sequencing to describe chains of transmission.
DeSilva MB , Styles T , Basler C , Moses FL , Husain F , Reichler M , Whitmer S , McAuley J , Belay E , Friedman M , Muoghalu IS , Swaray P , Stroher U , Redd JT .
Epidemiol Infect 2019 147 e88 type
First Laboratory-Confirmed Outbreak of Human and Animal Rift Valley Fever Virus in Uganda in 48 Years.
Shoemaker TR , Nyakarahuka L , Balinandi S , Ojwang J , Tumusiime A , Mulei S , Kyondo J , Lubwama B , Sekematte M , Namutebi A , Tusiime P , Monje F , Mayanja M , Ssendagire S , Dahlke M , Kyazze S , Wetaka M , Makumbi I , Borchert J , Zufan S , Patel K , Whitmer S , Brown S , Davis WG , Klena JD , Nichol ST , Rollin PE , Lutwama J .
Am J Trop Med Hyg 2019 100 (3) 659-671 type
Characterization of Unknown Orthobunya-Like Viruses from India.
Whitmer SLM , Yadav PD , Sarkale P , Chaubal GY , Francis A , Klena J , Nichol ST , Stroher U , Mourya DT .
Viruses 2018 10 (9) type
New Lineage of Lassa Virus, Togo, 2016.
Whitmer Shannon L M, Strecker Thomas, Cadar Daniel, Dienes Hans-Peter, Faber Kelly, Patel Ketan, Brown Shelley M, Davis William G, Klena John D, Rollin Pierre E, Schmidt-Chanasit Jonas, Fichet-Calvet Elisabeth, Noack Bernd, Emmerich Petra, Rieger Toni, Wolff Svenja, Fehling Sarah Katharina, Eickmann Markus, Mengel Jan Philipp, Schultze Tilman, Hain Torsten, Ampofo William, Bonney Kofi, Aryeequaye Juliana Naa Dedei, Ribner Bruce, Varkey Jay B, Mehta Aneesh K, Lyon G Marshall, Kann Gerrit, De Leuw Philipp, Schuettfort Gundolf, Stephan Christoph, Wieland Ulrike, Fries Jochen W U, Kochanek Matthias, Kraft Colleen S, Wolf Timo, Nichol Stuart T, Becker Stephan, Ströher Ute, Günther Stephan.Emerging infectious diseases 2018 Mar (3) 599-602 .
Emerging infectious diseases 2018 Mar (3) 599-602 type
Active Ebola Virus Replication and Heterogeneous Evolutionary Rates in EVD Survivors.
Whitmer SLM , Ladner JT , Wiley MR , Patel K , Dudas G , Rambaut A , Sahr F , Prieto K , Shepard SS , Carmody E , Knust B , Naidoo D , Deen G , Formenty P , Nichol ST , Palacios G , Stroher U .
Cell Rep 2018 22 (5) 1159-1168 type
Virus genomes reveal factors that spread and sustained the Ebola epidemic.
Dudas Gytis, Carvalho Luiz Max, Bedford Trevor, Tatem Andrew J, Baele Guy, Faria Nuno R, Park Daniel J, Ladner Jason T, Arias Armando, Asogun Danny, Bielejec Filip, Caddy Sarah L, Cotten Matthew, D'Ambrozio Jonathan, Dellicour Simon, Caro Antonino Di, Diclaro Joseph W, Duraffour Sophie, Elmore Michael J, Fakoli Lawrence S, Faye Ousmane, Gilbert Merle L, Gevao Sahr M, Gire Stephen, Gladden-Young Adrianne, Gnirke Andreas, Goba Augustine, Grant Donald S, Haagmans Bart L, Hiscox Julian A, Jah Umaru, Kugelman Jeffrey R, Liu Di, Lu Jia, Malboeuf Christine M, Mate Suzanne, Matthews David A, Matranga Christian B, Meredith Luke W, Qu James, Quick Joshua, Pas Suzan D, Phan My V T, Pollakis Georgios, Reusken Chantal B, Sanchez-Lockhart Mariano, Schaffner Stephen F, Schieffelin John S, Sealfon Rachel S, Simon-Loriere Etienne, Smits Saskia L, Stoecker Kilian, Thorne Lucy, Tobin Ekaete Alice, Vandi Mohamed A, Watson Simon J, West Kendra, Whitmer Shannon, Wiley Michael R, Winnicki Sarah M, Wohl Shirlee, Wölfel Roman, Yozwiak Nathan L, Andersen Kristian G, Blyden Sylvia O, Bolay Fatorma, Carroll Miles W, Dahn Bernice, Diallo Boubacar, Formenty Pierre, Fraser Christophe, Gao George F, Garry Robert F, Goodfellow Ian, Günther Stephan, Happi Christian T, Holmes Edward C, Kargbo Brima, Keïta Sakoba, Kellam Paul, Koopmans Marion P G, Kuhn Jens H, Loman Nicholas J, Magassouba N'Faly, Naidoo Dhamari, Nichol Stuart T, Nyenswah Tolbert, Palacios Gustavo, Pybus Oliver G, Sabeti Pardis C, Sall Amadou, Ströher Ute, Wurie Isatta, Suchard Marc A, Lemey Philippe, Rambaut Andrew. Nature 2017 Apr .
Nature 2017 Apr (7650) 309-315
Preliminary Evaluation of the Effect of Investigational Ebola Virus Disease Treatments on Viral Genome Sequences.
Whitmer Shannon L M, Albariño César, Shepard Samuel S, Dudas Gytis, Sheth Mili, Brown Shelley C, Cannon Deborah, Erickson Bobbie R, Gibbons Aridth, Schuh Amy, Sealy Tara, Ervin Elizabeth, Frace Mike, Uyeki Timothy M, Nichol Stuart T, Ströher Ute.The Journal of infectious diseases 2016 Aug .
The Journal of infectious diseases 2016 Aug
Virus fitness differences observed between two naturally occurring isolates of Ebola virus Makona variant using a reverse genetics approach.
Albariño César G, Guerrero Lisa Wiggleton, Chakrabarti Ayan K, Kainulainen Markus H, Whitmer Shannon L M, Welch Stephen R, Nichol Stuart T. Virology 2016 Jun 496237-243 .
Virology 2016 Jun 496237-243
Development of a TaqMan Array Card for Acute Febrile Illness Outbreak Investigation and Surveillance of Emerging Pathogens including Ebola Virus.
Liu Jie, Ochieng Caroline, Wiersma Steve, Ströher Ute, Towner Jonathan S, Whitmer Shannon, Nichol Stuart T, Moore Christopher C, Kersh Gilbert J, Kato Cecilia, Sexton Christopher, Petersen Jeannine, Massung Robert, Hercik Christine, Crump John A, Kibiki Gibson, Maro Athanasia, Mujaga Buliga, Gratz Jean, Jacob Shevin T, Banura Patrick, Scheld W Michael, Juma Bonventure, Onyango Clayton O, Montgomery Joel M, Houpt Eric, Fields Barry.Journal of clinical microbiology 2015 Oct .
Journal of clinical microbiology 2015 Oct
Ebola Virus Epidemiology, Transmission, and Evolution during Seven Months in Sierra Leone.
Park Daniel J, Dudas Gytis, Wohl Shirlee, Goba Augustine, Whitmer Shannon L M, Andersen Kristian G, Sealfon Rachel S, Ladner Jason T, Kugelman Jeffrey R, Matranga Christian B, Winnicki Sarah M, Qu James, Gire Stephen K, Gladden-Young Adrianne, Jalloh Simbirie, Nosamiefan Dolo, Yozwiak Nathan L, Moses Lina M, Jiang Pan-Pan, Lin Aaron E, Schaffner Stephen F, Bird Brian, Towner Jonathan, Mamoh Mambu, Gbakie Michael, Kanneh Lansana, Kargbo David, Massally James L B, Kamara Fatima K, Konuwa Edwin, Sellu Josephine, Jalloh Abdul A, Mustapha Ibrahim, Foday Momoh, Yillah Mohamed, Erickson Bobbie R, Sealy Tara, Blau Dianna, Paddock Christopher, Brault Aaron, Amman Brian, Basile Jane, Bearden Scott, Belser Jessica, Bergeron Eric, Campbell Shelley, Chakrabarti Ayan, Dodd Kimberly, Flint Mike, Gibbons Aridth, Goodman Christin, Klena John, McMullan Laura, Morgan Laura, Russell Brandy, Salzer Johanna, Sanchez Angela, Wang David, Jungreis Irwin, Tomkins-Tinch Christopher, Kislyuk Andrey, Lin Michael F, Chapman Sinead, MacInnis Bronwyn, Matthews Ashley, Bochicchio James, Hensley Lisa E, Kuhn Jens H, Nusbaum Chad, Schieffelin John S, Birren Bruce W, Forget Marc, Nichol Stuart T, Palacios Gustavo F, Ndiaye Daouda, Happi Christian, Gevao Sahr M, Vandi Mohamed A, Kargbo Brima, Holmes Edward C, Bedford Trevor, Gnirke Andreas, Ströher Ute, Rambaut Andrew, Garry Robert F, Sabeti Pardis C.Cell 2015 Jun 18. (7) 1516-26 .
Cell 2015 Jun 18. (7) 1516-26
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