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CDC-Authored Genomics and Precision Health Publications Database|Home|PHGKB

CDC-Authored Genomics and Precision Health Publications Database


Last data update: Sep 25, 2023. (Total: 4416 publications since 2011)
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Records 1-30 (of 34 Records)
Query Trace: Tran T[original query]
Comparison of an ID NOW COVID-19 assay used at the point of care to laboratory-based nucleic acid amplification tests
Payne D , Williams C , Jacob J , Chastain-Potts S , Adjei M , Taye B , Montalvo S , Short L , Tran A .
J Clin Microbiol 2023 e0041323
Outbreaks of SARS-CoV-2 infections in nursing homes during periods of Delta and Omicron predominance, United States, July 2021-March 2022
Wilson WW , Keaton AA , Ochoa LG , Hatfield KM , Gable P , Walblay KA , Teran RA , Shea M , Khan U , Stringer G , Ganesan M , Gilbert J , Colletti JG , Grogan EM , Calabrese C , Hennenfent A , Perlmutter R , Janiszewski KA , Brandeburg C , Kamal-Ahmed I , Strand K , Donahue M , Ashraf MS , Berns E , MacFarquhar J , Linder ML , Tran DJ , Kopp P , Walker RM , Ess R , Baggs J , Jernigan JA , Kallen A , Hunter JC .
Emerg Infect Dis 2023 29 (4) 761-770
Severe acute respiratory coronavirus virus 2 (SARS-CoV-2) outbreaks in nursing homes involving residents who had completed a primary coronavirus disease 2019 (COVID-19) vaccine series-13 US jurisdictions, July-November 2021.
WyattWilson W , Keaton AA , Ochoa LG , Hatfield KM , Gable P , Walblay KA , Teran RA , Shea M , Khan U , Stringer G , Colletti JG , Grogan EM , Calabrese C , Hennenfent A , Perlmutter R , Janiszewski KA , Kamal-Ahmed I , Strand K , Berns E , MacFarquhar J , Linder M , Tran DJ , Kopp P , Walker RM , Ess R , Read JS , Yingst C , Baggs J , Jernigan JA , Kallen A , Hunter JC .
Infect Control Hosp Epidemiol 2023 1-5 type
MaHPIC malaria systems biology data from Plasmodium cynomolgi sporozoite longitudinal infections in macaques.
DeBarry JD , Nural MV , Pakala SB , Nayak V , Warrenfeltz S , Humphrey J , Lapp SA , Cabrera-Mora M , Brito CFA , Jiang J , Saney CL , Hankus A , Stealey HM , DeBarry MB , Lackman N , Legall N , Lee K , Tang Y , Gupta A , Trippe ED , Bridger RR , Weatherly DB , Peterson MS , Jiang X , Tran V , Uppal K , Fonseca LL , Joyner CJ , Karpuzoglu E , Cordy RJ , Meyer EVS , Wells LL , Ory DS , Lee FE , Tirouvanziam R , Gutirrez JB , Ibegbu C , Lamb TJ , Pohl J , Pruett ST , Jones DP , Styczynski MP , Voit EO , Moreno A , Galinski MR , Kissinger JC .
Sci Data 2022 9 (1) 722
Invasive Group A Streptococcal Penicillin Binding Protein 2× Variants Associated with Reduced Susceptibility to β-Lactam Antibiotics in the United States, 2015-2021.
Chochua S , Metcalf B , Li Z , Mathis S , Tran T , Rivers J , Fleming-Dutra KE , Li Y , McGee L , Beall B .
Antimicrob Agents Chemother 2022 66 (9) e0080222
Evaluation of individual and ensemble probabilistic forecasts of COVID-19 mortality in the United States.
Cramer EY , Ray EL , Lopez VK , Bracher J , Brennen A , CastroRivadeneira AJ , Gerding A , Gneiting T , House KH , Huang Y , Jayawardena D , Kanji AH , Khandelwal A , Le K , Mhlemann A , Niemi J , Shah A , Stark A , Wang Y , Wattanachit N , Zorn MW , Gu Y , Jain S , Bannur N , Deva A , Kulkarni M , Merugu S , Raval A , Shingi S , Tiwari A , White J , Abernethy NF , Woody S , Dahan M , Fox S , Gaither K , Lachmann M , Meyers LA , Scott JG , Tec M , Srivastava A , George GE , Cegan JC , Dettwiller ID , England WP , Farthing MW , Hunter RH , Lafferty B , Linkov I , Mayo ML , Parno MD , Rowland MA , Trump BD , Zhang-James Y , Chen S , Faraone SV , Hess J , Morley CP , Salekin A , Wang D , Corsetti SM , Baer TM , Eisenberg MC , Falb K , Huang Y , Martin ET , McCauley E , Myers RL , Schwarz T , Sheldon D , Gibson GC , Yu R , Gao L , Ma Y , Wu D , Yan X , Jin X , Wang YX , Chen Y , Guo L , Zhao Y , Gu Q , Chen J , Wang L , Xu P , Zhang W , Zou D , Biegel H , Lega J , McConnell S , Nagraj VP , Guertin SL , Hulme-Lowe C , Turner SD , Shi Y , Ban X , Walraven R , Hong QJ , Kong S , vandeWalle A , Turtle JA , Ben-Nun M , Riley S , Riley P , Koyluoglu U , DesRoches D , Forli P , Hamory B , Kyriakides C , Leis H , Milliken J , Moloney M , Morgan J , Nirgudkar N , Ozcan G , Piwonka N , Ravi M , Schrader C , Shakhnovich E , Siegel D , Spatz R , Stiefeling C , Wilkinson B , Wong A , Cavany S , Espaa G , Moore S , Oidtman R , Perkins A , Kraus D , Kraus A , Gao Z , Bian J , Cao W , LavistaFerres J , Li C , Liu TY , Xie X , Zhang S , Zheng S , Vespignani A , Chinazzi M , Davis JT , Mu K , Pastore YPionttiA , Xiong X , Zheng A , Baek J , Farias V , Georgescu A , Levi R , Sinha D , Wilde J , Perakis G , Bennouna MA , Nze-Ndong D , Singhvi D , Spantidakis I , Thayaparan L , Tsiourvas A , Sarker A , Jadbabaie A , Shah D , DellaPenna N , Celi LA , Sundar S , Wolfinger R , Osthus D , Castro L , Fairchild G , Michaud I , Karlen D , Kinsey M , Mullany LC , Rainwater-Lovett K , Shin L , Tallaksen K , Wilson S , Lee EC , Dent J , Grantz KH , Hill AL , Kaminsky J , Kaminsky K , Keegan LT , Lauer SA , Lemaitre JC , Lessler J , Meredith HR , Perez-Saez J , Shah S , Smith CP , Truelove SA , Wills J , Marshall M , Gardner L , Nixon K , Burant JC , Wang L , Gao L , Gu Z , Kim M , Li X , Wang G , Wang Y , Yu S , Reiner RC , Barber R , Gakidou E , Hay SI , Lim S , Murray C , Pigott D , Gurung HL , Baccam P , Stage SA , Suchoski BT , Prakash BA , Adhikari B , Cui J , Rodrguez A , Tabassum A , Xie J , Keskinocak P , Asplund J , Baxter A , Oruc BE , Serban N , Arik SO , Dusenberry M , Epshteyn A , Kanal E , Le LT , Li CL , Pfister T , Sava D , Sinha R , Tsai T , Yoder N , Yoon J , Zhang L , Abbott S , Bosse NI , Funk S , Hellewell J , Meakin SR , Sherratt K , Zhou M , Kalantari R , Yamana TK , Pei S , Shaman J , Li ML , Bertsimas D , SkaliLami O , Soni S , TaziBouardi H , Ayer T , Adee M , Chhatwal J , Dalgic OO , Ladd MA , Linas BP , Mueller P , Xiao J , Wang Y , Wang Q , Xie S , Zeng D , Green A , Bien J , Brooks L , Hu AJ , Jahja M , McDonald D , Narasimhan B , Politsch C , Rajanala S , Rumack A , Simon N , Tibshirani RJ , Tibshirani R , Ventura V , Wasserman L , O'Dea EB , Drake JM , Pagano R , Tran QT , Ho LST , Huynh H , Walker JW , Slayton RB , Johansson MA , Biggerstaff M , Reich NG .
Proc Natl Acad Sci U S A 2022 119 (15) e2113561119 type
Invasive pneumococcal disease clusters disproportionally impact persons experiencing homelessness, injecting drug users, and the western United States.
Beall B , Chochua S , Li Z , Tran T , Varghese J , McGee L , Li Y , Metcalf B .
J Infect Dis 2022 226 (2) 332-341
Performance and Operational Evaluation of the Access Bio CareStart Rapid Antigen Test in a High-Throughput Drive-Through Community Testing Site in Massachusetts.
Pollock NR , Tran K , Jacobs JR , Cranston AE , Smith S , O'Kane CY , Roady TJ , Moran A , Scarry A , Carroll M , Volinsky L , Perez G , Patel P , Gabriel S , Lennon NJ , Madoff LC , Brown C , Smole SC .
Open Forum Infect Dis 2021 8 (7) ofab243 type
SARS-CoV-2 spike D614G change enhances replication and transmission.
Zhou B , ThiNhuThao T , Hoffmann D , Taddeo A , Ebert N , Labroussaa F , Pohlmann A , King J , Steiner S , Kelly JN , Portmann J , Halwe NJ , Ulrich L , Treb BS , Fan X , Hoffmann B , Wang L , Thomann L , Lin X , Stalder H , Pozzi B , deBrot S , Jiang N , Cui D , Hossain J , Wilson M , Keller M , Stark TJ , Barnes JR , Dijkman R , Jores J , Benarafa C , Wentworth DE , Thiel V , Beer M .
Nature 2021 592 (7852) 122-127 type
Carriage and Gene Content Variability of the pESI-Like Plasmid Associated with Salmonella Infantis Recently Established in United States Poultry Production.
McMillan EA , Wasilenko JL , Tagg KA , Chen JC , Simmons M , Gupta SK , Tillman GE , Folster J , Jackson CR , Frye JG .
Genes (Basel) 2020 11 (12)
Invasive pneumococcal strain distributions and isolate clusters associated with persons experiencing homelessness during 2018.
Metcalf BJ , Chochua S , Walker H , Tran T , Li Z , Varghese J , SnippesVagnone PM , Lynfield R , McGee L , Li Y , Pilishvili T , Beall B .
Clin Infect Dis 2020 72 (12) e948-e956
Upsurge of conjugate vaccine serotype 4 invasive pneumococcal disease clusters among adults experiencing homelessness in California, Colorado, and New Mexico.
Beall B , Walker H , Tran T , Li Z , Varghese J , McGee L , Li Y , Metcalf BJ , Gierke R , Mosites E , Chochua S , Pilishvili T .
J Infect Dis 2020 223 (7) 1241-1249
The efficacy of dihydroartemisinin-piperaquine and artemether-lumefantrine with and without primaquine on Plasmodium vivax recurrence: A systematic review and individual patient data meta-analysis.
Commons RJ , Simpson JA , Thriemer K , Abreha T , Adam I , Anstey NM , Assefa A , Awab GR , Baird JK , Barber BE , Chu CS , Dahal P , Daher A , Davis TME , Dondorp AM , Grigg MJ , Humphreys GS , Hwang J , Karunajeewa H , Laman M , Lidia K , Moore BR , Mueller I , Nosten F , Pasaribu AP , Pereira DB , Phyo AP , Poespoprodjo JR , Sibley CH , Stepniewska K , Sutanto I , Thwaites G , Hien TT , White NJ , William T , Woodrow CJ , Guerin PJ , Price RN .
PLoS Med 2019 16 (10) e1002928
Multistate population and whole genome sequence based strain surveillance of invasive pneumococci recovered in the United States during 2017.
Varghese J , Chochua S , Tran T , Walker H , Li Z , SnippesVagnone PM , Lynfield R , McGee L , Li Y , Metcalf B , Pilishvili T , Beall B .
Clin Microbiol Infect 2019 26 (4) 512 e1-512 e10
The haematological consequences of Plasmodium vivax malaria after chloroquine treatment with and without primaquine: a WorldWide Antimalarial Resistance Network systematic review and individual patient data meta-analysis.
Commons RJ , Simpson JA , Thriemer K , Chu CS , Douglas NM , Abreha T , Alemu SG , Anez A , Anstey NM , Aseffa A , Assefa A , Awab GR , Baird JK , Barber BE , Borghini-Fuhrer I , D'Alessandro U , Dahal P , Daher A , deVries PJ , Erhart A , Gomes MSM , Grigg MJ , Hwang J , Kager PA , Ketema T , Khan WA , Lacerda MVG , Leslie T , Ley B , Lidia K , Monteiro WM , Pereira DB , Phan GT , Phyo AP , Rowland M , Saravu K , Sibley CH , Siqueira AM , Stepniewska K , Taylor WRJ , Thwaites G , Tran BQ , Hien TT , Vieira JLF , Wangchuk S , Watson J , William T , Woodrow CJ , Nosten F , Guerin PJ , White NJ , Price RN .
BMC Med 2019 17 (1) 151
Notes from the Field: Clinical Klebsiella pneumoniae Isolate with Three Carbapenem Resistance Genes Associated with Urology Procedures - King County, Washington, 2018.
Vannice K , Benoliel E , Kauber K , Brostrom-Smith C , Montgomery P , Kay M , Walters M , Tran M , D'Angeli M , Duchin J .
MMWR Morb Mortal Wkly Rep 2019 68 (30) 667-668
Distinct amino acid and lipid perturbations characterize acute versus chronic malaria.
Cordy RJ , Patrapuvich R , Lili LN , Cabrera-Mora M , Chien JT , Tharp GK , Khadka M , Meyer EV , Lapp SA , Joyner CJ , Garcia A , Banton S , Tran V , Luvira V , Rungin S , Saeseu T , Rachaphaew N , Pakala SB , DeBarry JD , Kissinger JC , Ortlund EA , Bosinger SE , Barnwell JW , Jones DP , Uppal K , Li S , Sattabongkot J , Moreno A , Galinski MR .
JCI Insight 2019 4 (9)
Genome-wide association analyses of invasive pneumococcal isolates identify a missense bacterial mutation associated with meningitis.
Li Y , Metcalf BJ , Chochua S , Li Z , Walker H , Tran T , Hawkins PA , Gierke R , Pilishvili T , McGee L , Beall BW .
Nat Commun 2019 10 (1) 178
A Population-Based Descriptive Atlas of Invasive Pneumococcal Strains Recovered Within the U.S. During 2015-2016.
Beall B , Chochua S , Gertz RE Jr , Li Y , Li Z , McGee L , Metcalf BJ , Ricaldi J , Tran T , Walker H , Pilishvili T .
Front Microbiol 2018 9 2670
Expression profiles of host immune response-related genes against HEV genotype 3 and genotype 1 infections in rhesus macaques.
Choi YH , Zhang X , Tran C , Skinner B .
J Viral Hepat 2018 25 (8) 986-995
Legionnaires' Disease Outbreak Caused by Endemic Strain of Legionella pneumophila, New York, New York, USA, 2015.
Lapierre Pascal, Nazarian Elizabeth, Zhu Yan, Wroblewski Danielle, Saylors Amy, Passaretti Teresa, Hughes Scott, Tran Anthony, Lin Ying, Kornblum John, Morrison Shatavia S, Mercante Jeffrey W, Fitzhenry Robert, Weiss Don, Raphael Brian H, Varma Jay K, Zucker Howard A, Rakeman Jennifer L, Musser Kimberlee A.Emerging infectious diseases 2017 Nov (11) 1784-1791 .
Emerging infectious diseases 2017 Nov (11) 1784-1791
Highly Pathogenic Avian Influenza A(H5N1) Viruses at the Animal-Human Interface in Vietnam, 2003-2010.
Creanga Adrian, Hang Nguyen Le Khanh, Cuong Vuong Duc, Nguyen Ha T, Phuong Hoang Vu Mai, Thanh Le Thi, Thach Nguyen Co, Hien Pham Thi, Tung Nguyen, Jang Yunho, Balish Amanda, Dang Nguyen Hoang, Duong Mai Thuy, Huong Ngo Thu, Hoa Do Ngoc, Tho Nguyen Dang, Klimov Alexander, Kapella Bryan K, Gubareva Larisa, Kile James C, Hien Nguyen Tran, Mai Le Quynh, Davis C Todd. The Journal of infectious diseases 2017 216(suppl_4) S529-S538 .
The Journal of infectious diseases 2017 216(suppl_4) S529-S538
Validation of ß-lactam minimum inhibitory concentration predictions for pneumococcal isolates with newly encountered penicillin binding protein (PBP) sequences.
Li Yuan, Metcalf Benjamin J, Chochua Sopio, Li Zhongya, Gertz Robert E, Walker Hollis, Hawkins Paulina A, Tran Theresa, McGee Lesley, Beall Bernard W, .BMC genomics 2017 Aug (1) 621 .
BMC genomics 2017 Aug (1) 621
Invasive Serotype 35B Pneumococci Including an Expanding Serotype Switch Lineage, United States, 2015-2016.
Chochua Sopio, Metcalf Benjamin J, Li Zhongya, Walker Hollis, Tran Theresa, McGee Lesley, Beall Bernard. Emerging infectious diseases 2017 Jun 23(6) 922-930 .
Emerging infectious diseases 2017 06 (6) 922-930
Short-read whole genome sequencing for determination of antimicrobial resistance mechanisms and capsular serotypes of current invasive Streptococcus agalactiae recovered in the United States.
Metcalf Benjamin J, Chochua Sopio, Gertz Robert E, Hawkins Paulina A, Ricaldi Jessica, Li Zhongya, Walker Hollis, Tran Theresa, Rivers Joy, Mathis Saundra, Jackson Delois, Glennen Anita, Lynfield Ruth, McGee Lesley, Beall Bernard, . Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases 2017 Feb .
Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases 2017 Feb
Engineering Botulinum Neurotoxin C1 as a Molecular Vehicle for Intra-Neuronal Drug Delivery.
Vazquez-Cintron Edwin J, Beske Phillip H, Tenezaca Luis, Tran Bao Q, Oyler Jonathan M, Glotfelty Elliot J, Angeles Christopher A, Syngkon Aurelia, Mukherjee Jean, Kalb Suzanne R, Band Philip A, McNutt Patrick M, Shoemaker Charles B, Ichtchenko Konstantin. Scientific reports 2017 Feb 742923 .
Scientific reports 2017 Feb 742923
A Large Community Outbreak of Legionnaires' Disease Associated With a Cooling Tower in New York City, 2015.
Weiss Don, Boyd Christopher, Rakeman Jennifer L, Greene Sharon K, Fitzhenry Robert, McProud Trevor, Musser Kimberlee, Huang Li, Kornblum John, Nazarian Elizabeth J, Fine Annie D, Braunstein Sarah L, Kass Daniel, Landman Keren, Lapierre Pascal, Hughes Scott, Tran Anthony, Taylor Jill, Baker Deborah, Jones Lucretia, Kornstein Laura, Liu Boning, Perez Rodolfo, Lucero David E, Peterson Eric, Benowitz Isaac, Lee Kristen F, Ngai Stephanie, Stripling Mitch, Varma Jay K, .Public health reports (Washington, D.C. : 1974) 2017 Jan 33354916689620 .
Public health reports (Washington, D.C. : 1974) 2017 Jan 33354916689620
Global phylogeography and evolutionary history of Shigella dysenteriae type 1.
Njamkepo Elisabeth, Fawal Nizar, Tran-Dien Alicia, Hawkey Jane, Strockbine Nancy, Jenkins Claire, Talukder Kaisar A, Bercion Raymond, Kuleshov Konstantin, Kolínská Renáta, Russell Julie E, Kaftyreva Lidia, Accou-Demartin Marie, Karas Andreas, Vandenberg Olivier, Mather Alison E, Mason Carl J, Page Andrew J, Ramamurthy Thandavarayan, Bizet Chantal, Gamian Andrzej, Carle Isabelle, Sow Amy Gassama, Bouchier Christiane, Wester Astrid Louise, Lejay-Collin Monique, Fonkoua Marie-Christine, Hello Simon Le, Blaser Martin J, Jernberg Cecilia, Ruckly Corinne, Mérens Audrey, Page Anne-Laure, Aslett Martin, Roggentin Peter, Fruth Angelika, Denamur Erick, Venkatesan Malabi, Bercovier Hervé, Bodhidatta Ladaporn, Chiou Chien-Shun, Clermont Dominique, Colonna Bianca, Egorova Svetlana, Pazhani Gururaja P, Ezernitchi Analia V, Guigon Ghislaine, Harris Simon R, Izumiya Hidemasa, Korzeniowska-Kowal Agnieszka, Lutyńska Anna, Gouali Malika, Grimont Francine, Langendorf Céline, Marejková Monika, Peterson Lorea A M, Perez-Perez Guillermo, Ngandjio Antoinette, Podkolzin Alexander, Souche Erika, Makarova Mariia, Shipulin German A, Ye Changyun, Žemličková Helena, Herpay Mária, Grimont Patrick A D, Parkhill Julian, Sansonetti Philippe, Holt Kathryn E, Brisse Sylvain, Thomson Nicholas R, Weill François-Xavier.Nature microbiology 2016 16027 .
Nature microbiology 2016 16027
Using whole genome sequencing to identify resistance determinants and predict antimicrobial resistance phenotypes for year 2015 invasive pneumococcal disease isolates recovered in the United States.
Metcalf Benjamin J, Chochua Sopio, Gertz Robert E, Li Zhongya, Walker Hollis, Tran Theresa, Hawkins Paulina A, Glennen Anita, Lynfield Ruth, Li Yuan, McGee Lesley, Beall Bernard, .Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases 2016 Aug .
Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases 2016 Aug
Penicillin-Binding Protein Transpeptidase Signatures for Tracking and Predicting ß-Lactam Resistance Levels in Streptococcus pneumoniae.
Li Yuan, Metcalf Benjamin J, Chochua Sopio, Li Zhongya, Gertz Robert E, Walker Hollis, Hawkins Paulina A, Tran Theresa, Whitney Cynthia G, McGee Lesley, Beall Bernard W. mBio 2016 7(3) .
mBio 2016 7(3)
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