CDC-Authored Genomics and Precision Health Publications Database

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Last data update: Nov 04, 2024. (Total: 6390 publications)

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Records 1-30 (of 60 Records)

Query Trace: Switzer WM[original query]
Investigation of presumptive HIV transmission associated with receipt of platelet-rich plasma microneedling facials at a spa among former spa clients - New Mexico, 2018-2023 Stadelman-Behar AM , Gehre MN , Atallah L , Clarke T , Leonso AA , Jojola F , Zheng H , Jia H , Lyss SB , Switzer WM , Grytdal SP , Durham M , Salas NM , Sievers M , Smelser C . MMWR Morb Mortal Wkly Rep 2024 73 (16) 372-376
High HIV diversity, recombination, and superinfection revealed in a large outbreak among persons who inject drugs in Kentucky and Ohio, USA Switzer WM , Shankar A , Jia H , Knyazev S , Ambrosio F , Kelly R , Zheng H , Campbell EM , Cintron R , Pan Y , Saduvala N , Panneer N , Richman R , Singh MB , Thoroughman DA , Blau EF , Khalil GM , Lyss S , Heneine W . Virus Evol 2024 10 (1) veae015
Absence of giant blood Marseille-like virus DNA detection by polymerase chain reaction in plasma from healthy US blood donors and serum from multiply transfused patients from Cameroon. Phan TG , Desnues C , Switzer WM , Djoko CF , Schneider BS , Deng X , Delwart E . Transfusion 2015 55 (6) 1256-62
HantaNet: A new microbetrace application for hantavirus classification, genomic surveillance, epidemiology and outbreak investigations Cintron R , Whitmer SLM , Moscoso E , Campbell EM , Kelly R , Talundzic E , Mobley M , Chiu KW , Shedroff E , Shankar A , Montgomery JM , Klena JD , Switzer WM . Viruses 2023 15 (11)
Transmitted HIV drug resistance in Bulgaria occurs in clusters of individuals from different transmission groups and various subtypes (2012-2020) Alexiev I , Shankar A , Pan Y , Grigorova L , Partsuneva A , Dimitrova R , Gancheva A , Kostadinova A , Elenkov I , Yancheva N , Grozdeva R , Strashimirov D , Stoycheva M , Baltadzhiev I , Doichinova T , Pekova L , Kosmidis M , Emilova R , Nikolova M , Switzer WM . Viruses 2023 15 (4)
MicrobeTrace: Retooling molecular epidemiology for rapid public health response. Campbell EM , Boyles A , Shankar A , Kim J , Knyazev S , Cintron R , Switzer WM . PLoS Comput Biol 2021 17 (9) e1009300
Evolutionary history of orangutan plasmodia revealed by phylogenetic analysis of complete mtDNA genomes and new biogeographical divergence dating calibration models. Reid MJC , Switzer WM , Alonso SK , Lowenberger CA , Schillaci MA . Am J Primatol 2021 84 e23298
Accurate assembly of minority viral haplotypes from next-generation sequencing through efficient noise reduction. Knyazev S , Tsyvina V , Shankar A , Melnyk A , Artyomenko A , Malygina T , Porozov YB , Campbell EM , Switzer WM , Skums P , Mangul S , Zelikovsky A . Nucleic Acids Res 2021 49 (17) e102
The CDC HIV Outbreak Coordination Unit: Developing a Standardized, Collaborative Approach to HIV Outbreak Assessment and Response. Oster AM , France AM , McClung RP , Buchacz K , Lyss SB , Peters PJ , Weidle PJ , Switzer WM , Phillip SAJr , Brooks JT , Hernandez AL . Public Health Rep 2021 137 (4) 333549211018678
Increasing Capacity to Detect Clusters of Rapid HIV Transmission in Varied Populations-United States. Oster AM , Panneer N , Lyss SB , McClung RP , Watson M , Saduvala N , Ocfemia MCB , Linley L , Switzer WM , Wertheim JO , Campbell E , Hernandez AL , France AM . Viruses 2021 13 (4)
CD4 receptor diversity represents an ancient protection mechanism against primate lentiviruses. Russell RM , Bibollet-Ruche F , Liu W , Sherrill-Mix S , Li Y , Connell J , Loy DE , Trimboli S , Smith AG , Avitto AN , Gondim MVP , Plenderleith LJ , Wetzel KS , Collman RG , Ayouba A , Esteban A , Peeters M , Kohler WJ , Miller RA , François-Souquiere S , Switzer WM , Hirsch VM , Marx PA , Piel AK , Stewart FA , Georgiev AV , Sommer V , Bertolani P , Hart JA , Hart TB , Shaw GM , Sharp PM , Hahn BH . Proc Natl Acad Sci U S A 2021 118 (13)
Human T-cell lymphotropic virus type 1 transmission dynamics in rural villages in the democratic republic of the congo with high nonhuman primate exposure. Halbrook M , Gadoth A , Shankar A , Zheng H , Campbell EM , Hoff NA , Muyembe JJ , Wemakoy EO , Rimoin AW , Switzer WM . PLoS Negl Trop Dis 2021 15 (1) e0008923
Molecular Epidemiological Analysis of the Origin and Transmission Dynamics of the HIV-1 CRF01_AE Sub-Epidemic in Bulgaria. Alexiev I , Campbell EM , Knyazev S , Pan Y , Grigorova L , Dimitrova R , Partsuneva A , Gancheva A , Kostadinova A , Seguin-Devaux C , Elenkov I , Yancheva N , Switzer WM . Viruses 2021 13 (1)
Identification of an HIV-1 and Neurosyphilis Cluster in Vermont. Singh D , Switzer WM , Belcher R , Daltry D , Read JS . Clin Infect Dis 2020 73 (9) e3244-e3249
Koala retrovirus diversity, transmissibility, and disease associations. Zheng H , Pan Y , Tang S , Pye GW , Stadler CK , Vogelnest L , Herrin KV , Rideout BA , Switzer WM . Retrovirology 2020 17 (1) 34
Employing Molecular Phylodynamic Methods to Identify and Forecast HIV Transmission Clusters in Public Health Settings: A Qualitative Study. Rich SN , Richards VL , Mavian CN , Switzer WM , Rife Magalis B , Poschman K , Geary S , Broadway SE , Bennett SB , Blanton J , Leitner T , Boatwright JL , Stetten NE , Cook RL , Spencer EC , Salemi M , Prosperi M . Viruses 2020 12 (9)
Human Immunodeficiency Virus (HIV) Outbreak Investigation Among Persons Who Inject Drugs in Massachusetts Enhanced by HIV Sequence Data. Tumpney M , John B , Panneer N , McClung RP , Campbell EM , Roosevelt K , DeMaria A , Buchacz K , Switzer WM , Lyss S , Cranston K . J Infect Dis 2020 222 S259-s267
Complete Genome Sequence of a Baboon Simian Foamy Virus Isolated from an Infected Human. Shankar A , Shanmugam V , Switzer WM . Microbiol Resour Announc 2020 9 (27)
Molecular Epidemiology of the HIV-1 Subtype B Sub-Epidemic in Bulgaria. Alexiev I , Campbell EM , Knyazev S , Pan Y , Grigorova L , Dimitrova R , Partsuneva A , Gancheva A , Kostadinova A , Seguin-Devaux C , Switzer WM . Viruses 2020 12 (4)
Using an Established Outbreak Response Plan and Molecular Epidemiology Methods in an HIV Transmission Cluster Investigation, Tennessee, January-June 2017. Sizemore L , Fill MM , Mathieson SA , Black J , Brantley M , Cooper K , Garrett J , Switzer WM , Peters PJ , Wester C . Public Health Rep 2020 135 (3) 33354920915445
Phylodynamic Analysis Complements Partner Services by Identifying Acute and Unreported HIV Transmission. Campbell EM , Patala A , Shankar A , Li JF , Johnson JA , Westheimer E , Gay CL , Cohen SE , Switzer WM , Peters PJ . Viruses 2020 12 (2)
Natural selection favoring more transmissible HIV detected in United States molecular transmission network. Wertheim JO , Oster AM , Switzer WM , Zhang C , Panneer N , Campbell E , Saduvala N , Johnson JA , Heneine W . Nat Commun 2019 10 (1) 5788
Molecular Analysis of the Complete Genome of a Simian Foamy Virus Infecting Hylobates pileatus (pileated gibbon) Reveals Ancient Co-Evolution with Lesser Apes. Shankar A , Sibley SD , Goldberg TL , Switzer WM . Viruses 2019 11 (7)
Genome-wide patterns of gene expression in a wild primate indicate species-specific mechanisms associated with tolerance to natural simian immunodeficiency virus infection. Simons ND , Eick GN , Ruiz-Lopez MJ , Hyeroba D , Omeja PA , Weny G , Chapman CA , Goldberg TL , Zheng H , Shankar A , Switzer WM , Frost SDW , Jones JH , Sterner KN , Ting N . Genome Biol Evol 2019 11 (6) 1630-1643
Clinical and Molecular Features of Feline Foamy Virus and Feline Leukemia Virus Co-Infection in Naturally-Infected Cats. Cavalcante LTF , Muniz CP , Jia H , Augusto AM , Troccoli F , Medeiros SO , Dias CGA , Switzer WM , Soares MA , Santos AF . Viruses 2018 10 (12)
Maintenance and reappearance of extremely divergent intra-host HIV-1 variants. Wertheim JO , Oster AM , Murrell B , Saduvala N , Heneine W , Switzer WM , Johnson JA . Virus Evol 2018 4 (2) vey030
A large HCV transmission network enabled a fast-growing HIV outbreak in rural Indiana, 2015. Ramachandran S , Thai H , Forbi JC , Galang RR , Dimitrova Z , Xia GL , Lin Y , Punkova LT , Pontones PR , Gentry J , Blosser SJ , Lovchik J , Switzer WM , Teshale E , Peters P , Ward J , Khudyakov Y . EBioMedicine 2018 37 374-381
Identifying Clusters of Recent and Rapid HIV Transmission Through Analysis of Molecular Surveillance Data. Oster AM , France AM , Panneer N , Banez Ocfemia MC , Campbell E , Dasgupta S , Switzer WM , Wertheim JO , Hernandez AL . J Acquir Immune Defic Syndr 2018 79 (5) 543-550
Detailed Transmission Network Analysis of a Large Opiate-Driven Outbreak of HIV Infection in the United States. Campbell EM , Jia H , Shankar A , Hanson D , Luo W , Masciotra S , Owen SM , Oster AM , Galang RR , Spiller MW , Blosser SJ , Chapman E , Roseberry JC , Gentry J , Pontones P , Duwve J , Peyrani P , Kagan RM , Whitcomb JM , Peters PJ , Heneine W , Brooks JT , Switzer WM . J Infect Dis 2017 216 (9) 1053-1062
Zoonotic infection of Brazilian primate workers with New World simian foamy virus. Muniz CP , Cavalcante LTF , Jia H , Zheng H , Tang S , Augusto AM , Pissinatti A , Fedullo LP , Santos AF , Soares MA , Switzer WM . PLoS One 2017 12 (9) e0184502