CDC-Authored Genomics and Precision Health Publications Database
Last data update: Mar 21, 2025. (Total: 6600 publications)
| Query Trace: South E[original query] |
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| Annual estimation of seasonal influenza burden in 6 South American countries: A retrospective analysis of SARInet surveillance data to inform policies
Descalzo MA , de Paula Júnior FJ , Vergara Mallegas N , Penayo E , Voto C , Goñi N , Bruno A , Ferreira da Almeida WA , Ikeda do Carmo GM , Olivares Barraza MF , Fasce R , Pacheco J , Vázquez C , Von Horoch M , Battaglia S , Giovacchini C , Baumeister E , Santoro A , Buyayisqui MP , Alegretti M , Escobar Naranjo MP , Jara JH , Nogareda F , Rodríguez Á , Alvis-Zakzuk NJ , Iuliano AD , Azziz-Baumgartner E , Tempia S , Leite JA , Rondy M , Couto P . J Infect Dis 2025 231 S123-s132 
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| HIV clusters reported by state and local health departments in the United States, 2020-2022
Philpott DC , Curran KG , Russell OO , McClung RP , Hallmark CJ , Pieczykolan LL , Schlanger K , Panneer N , Oster AM , France AM . J Acquir Immune Defic Syndr 2025
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| Insights into global antimicrobial resistance dynamics through the sequencing of enteric bacteria from U.S. international travelers
Sridhar S , Worby CJ , Bronson RA , Turbett SE , Oliver EH , Shea T , Rao SR , Sanchez V , Becker MV , Kogut L , Slater D , Harris JB , Walters MS , Walker AT , Knouse MC , Leung DT , Kelly P , Ryan ET , LaRocque RC , Earl AM . bioRxiv 2025
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| A potential platform for future vaccine trials identifies high incidence of symptomatic and asymptomatic influenza infection among children aged 6-23 months in South Africa
Cohen C , du Plessis M , Martinson N , Moyes J , Walaza S , Wolter N , Makhasi M , Moosa F , Charles M , Samuels AM , Tempia S , Moloantoa T , Ncwana B , Phalatse L , Buys A , Fry A , Baumgartner EA , von Gottberg A , Kleynhans J . J Infect Dis 2025 231 (2) e328-e336 |
| Feasibility of implementing viral hepatitis services into a correctional service facility in Cape Town, South Africa
Scheibe A , Steingo J , Grace G , Savva H , Sonderup M , Hausler H , Spearman CW . Int J Drug Policy 2025 137 104710 |
| Molecular epidemiology of invasive group B Streptococcus in South Africa, 2019-2020
Ntozini B , Walaza S , Metcalf B , Hazelhurst S , de Gouveia L , Meiring S , Mogale D , Mtshali S , Ismail A , Ndlangisa K , Du Plessis M , Quan V , Chochua S , McGee L , von Gottberg A , Wolter N . J Infect Dis 2024
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| Exploring the potential of introducing an electronic death registration system in South Africa
Sant Fruchtman C , Kallis N , Govender S , Bradshaw D , Cobos D , Morof D , Groenewald P . Health Res Policy Syst 2024 22 (1) 177 |
| Genomic perspective on the bacillus causing paratyphoid B fever
Hawkey J , Frézal L , Tran Dien A , Zhukova A , Brown D , Chattaway MA , Simon S , Izumiya H , Fields PI , De Lappe N , Kaftyreva L , Xu X , Isobe J , Clermont D , Njamkepo E , Akeda Y , Issenhuth-Jeanjean S , Makarova M , Wang Y , Hunt M , Jenkins BM , Ravel M , Guibert V , Serre E , Matveeva Z , Fabre L , Cormican M , Yue M , Zhu B , Morita M , Iqbal Z , Silva Nodari C , Pardos de la Gandara M , Weill FX . Nat Commun 2024 15 (1) 10143
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| Trends in the incidence of young-adult-onset diabetes by diabetes type: a multi-national population-based study from an international diabetes consortium
Magliano DJ , Chen L , Morton JI , Salim A , Carstensen B , Gregg EW , Pavkov ME , Arffman M , Colhoun HM , Ha KH , Imamura T , Jermendy G , Kim DJ , Kiss Z , Mauricio D , McGurnaghan SJ , Nishioka Y , Wild SH , Winell K , Shaw JE . Lancet Diabetes Endocrinol 2024 12 (12) 915-923 |
| Spatiotemporal evolution and transmission dynamics of Alpha and Delta SARS-CoV-2 variants contributing to sequential outbreaks in Cambodia during 2021
Su YCF , Zeller MA , Ou TP , Ma J , Pum L , Zhang R , Rath S , Heang V , Kol S , Lim R , Chea KL , Khun L , Heng L , Krang S , Raftery P , Kinzer MH , Ieng V , Kab V , Patel S , Sar B , Horm VS , Yann S , Auerswald H , Siegers JY , Troupin C , Boukli N , Vandelannoote K , Wong FY , Ng GGK , Chan M , Sorn S , Sengdoeurn Y , Heng S , Darapheak C , Savuth C , Khalakdina A , Ly S , Baril L , Spiegel A , Duong V , Ly S , Smith GJD , Karlsson EA . Commun Med (Lond) 2024 4 (1) 252
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| Impact of pneumococcal conjugate vaccines on invasive pneumococcal disease-causing lineages among South African children
Lekhuleni C , Ndlangisa K , Gladstone RA , Chochua S , Metcalf BJ , Li Y , Kleynhans J , de Gouveia L , Hazelhurst S , Ferreira ADS , Skosana H , Walaza S , Quan V , Meiring S , Hawkins PA , McGee L , Bentley SD , Cohen C , Lo SW , von Gottberg A , du Plessis M . Nat Commun 2024 15 (1) 8401
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| Optimization of Bangladesh and Malaysian genotype recombinant reporter Nipah viruses for in vitro antiviral screening and in vivo disease modeling
Lo MK , Jain S , Davies KA , Sorvillo TE , Welch SR , Coleman-McCray JD , Chatterjee P , Hotard AL , O'Neal T , Flint M , Ai H , Albariño CG , Spengler JR , Montgomery JM , Spiropoulou CF . Antiviral Res 2024 231 106013
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| Estimation of vaccine effectiveness against SARS-CoV-2-associated hospitalization using sentinel surveillance in South Africa
Chiwandire N , Walaza S , von Gottberg A , Wolter N , Du Plessis M , Moosa F , Groome MJ , Nel J , Variava E , Dawood H , Makhasi M , Feldstein LR , Marcenac P , Lafond KE , Samuels AM , Cohen C . Int J Epidemiol 2024 53 (5)
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| The 2023 South Sudanese outbreak of Hepatitis E emphasizes ongoing circulation of genotype 1 in North, Central, and East Africa
Orf GS , Bbosa N , Berg MG , Downing R , Weiss SL , Ssemwanga D , Ssekagiri A , Ashraf S , da Silva Filipe A , Kiiza R , Buule J , Namagembe HS , Nabirye SE , Kayiwa J , Deng LL , Wani G , Maror JA , Baguma A , Mogga JJH , Kamili S , Thomson EC , Kaleebu P , Cloherty GA . Infect Genet Evol 2024 105667
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| Epidemiologic and Virologic Characteristics of Influenza in Lao PDR, 2016-2023
Wodniak N , Vilivong K , Khamphaphongphane B , Sengkeopraseuth B , Somoulay V , Chiew M , Ketmayoon P , Jiao M , Phimmasine S , Co KC , Leuangvilay P , Otsu S , Khanthamaly V , Keopaseuth P , Davis WW , Montgomery MP , Xangsayyarath P . Influenza Other Respir Viruses 2024 18 (8) e13353 |
| SARS-CoV-2 correlates of protection from infection against variants of concern
Sun K , Bhiman JN , Tempia S , Kleynhans J , Madzorera VS , Mkhize Q , Kaldine H , McMorrow ML , Wolter N , Moyes J , Carrim M , Martinson NA , Kahn K , Lebina L , du Toit JD , Mkhencele T , von Gottberg A , Viboud C , Moore PL , Cohen C . Nat Med 2024 |
| North-south pathways, emerging variants, and high climate suitability characterize the recent spread of dengue virus serotypes 2 and 3 in the Dominican Republic
Miguel I , Feliz EP , Agramonte R , Martinez PV , Vergara C , Imbert Y , De la Cruz L , de Castro N , Cedano O , De la Paz Y , Fonseca V , Santiago GA , Muñoz-Jordán JL , Peguero A , Paulino-Ramírez R , Grubaugh ND , de Filippis AMB , Alcantara LCJ , Rico JM , Lourenço J , Franco L , Giovanetti M . BMC Infect Dis 2024 24 (1) 751
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| Metagenomic detection of bacterial zoonotic pathogens among febrile patients, Tanzania, 2007-2009
Rolfe RJ , Sheldon SW , Kingry LC , Petersen JM , Maro VP , Kinabo GD , Saganda W , Maze MJ , Halliday JEB , Nicholson WL , Galloway RL , Rubach MP , Crump JA . Emerg Infect Dis 2024 30 (8) 1599-1608
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| Persistent transmission of circulating vaccine-derived poliovirus - Somalia, January 2017-March 2024
Mendes A , Mohamed GA , Derow M , Stehling-Ariza T , Mohamed A , Mengistu K , Bullard K , Akbar IE , Shukla H , Al Safadi M , Martinez M . MMWR Morb Mortal Wkly Rep 2024 73 (25) 575-580
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| Geographical migration and fitness dynamics of Streptococcus pneumoniae
Belman S , Lefrancq N , Nzenze S , Downs S , du Plessis M , Lo SW , McGee L , Madhi SA , von Gottberg A , Bentley SD , Salje H . Nature 2024 631 (8020) 386-392
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| Emergence of the novel sixth Candida auris Clade VI in Bangladesh
Khan T , Faysal NI , Hossain MM , Mah EMuneer S , Haider A , Moon SB , Sen D , Ahmed D , Parnell LA , Jubair M , Chow NA , Chowdhury F , Rahman M . Microbiol Spectr 2024 e0354023
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| Reemergence of a big brown bat lyssavirus rabies variant in striped skunks in Flagstaff, Arizona, USA, 2021-2023
Gilbert AT , Van Pelt LI , Hastings LA , Gigante CM , Orciari LA , Kelley S , Fitzpatrick K , Condori REC , Li Y , Brunt S , Davis A , Hopken MW , Mankowski CCP , Wallace RM , Rupprecht CE , Chipman RB , Bergman DL . Vector Borne Zoonotic Dis 2024
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| Who gets sick from COVID-19? Sociodemographic correlates of severe adult health outcomes during Alpha- and Delta-variant predominant periods, 9/2020-11/2021
Wei SC , Freeman D , Himschoot A , Clarke KEN , Van Dyke ME , Adjemian J , Ahmad FB , Benoit TJ , Berney K , Gundlapalli AV , Hall AJ , Havers F , Henley SJ , Hilton C , Johns D , Opsomer JD , Pham HT , Stuckey MJ , Taylor CA , Jones JM . J Infect Dis 2024 229 (1) 122-132 |
| Genomic diversity and antimicrobial susceptibility of invasive Neisseria meningitidis in South Africa, 2016-2021
Mikhari RL , Meiring S , de Gouveia L , Chan WY , Jolley KA , Van Tyne D , Harrison LH , Marjuki H , Ismail A , Quan V , Cohen C , Walaza S , von Gottberg A , du Plessis M . J Infect Dis 2024
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| Risk factors for severe COVID-19 among children and adolescents enrolled in acute respiratory infection sentinel surveillance in South Africa, 2020-2022
Bishop K , Meiring S , Tempia S , von Gottberg A , Wolter N , Kleynhans J , Moosa F , du Plessis M , Moyes J , Makhasi M , Chuene B , Samuels AM , Dawood H , Reubenson G , Zar HJ , Quan V , Cohen C , Walaza S . Influenza Other Respir Viruses 2024 18 (5) e13300 |
| Sosuga virus detected in Egyptian rousette bats (Rousettus aegyptiacus) in Sierra Leone
Amman BR , Koroma AH , Schuh AJ , Conteh I , Sealy TK , Foday I , Johnny J , Bakarr IA , Whitmer SLM , Wright EA , Gbakima AA , Graziano J , Bangura C , Kamanda E , Osborne A , Saidu E , Musa JA , Bangura DF , Williams SMT , Fefegula GM , Sumaila C , Jabaty J , James FH , Jambai A , Garnett K , Kamara TF , Towner JS , Lebbie A . Viruses 2024 16 (4)
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| Concurrent outbreaks of hepatitis A, invasive meningococcal disease, and Mpox, Florida, USA, 2021-2022
Doyle TJ , Gumke M , Stanek D , Moore J , Buck B , Locksmith T , Tomson K , Schmedes S , Churchwell G , Hubsmith SJ , Krishnamoorthy B , Poschman K , Danforth B , Chacreton D . Emerg Infect Dis 2024 30 (4) 633-43
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| Characteristics of infections with ancestral, Beta and Delta variants of SARS-CoV-2 in the PHIRST-C community cohort study, South Africa, 2020-2021
Cohen C , Kleynhans J , von Gottberg A , McMorrow ML , Wolter N , Bhiman JN , Moyes J , du Plessis M , Carrim M , Buys A , Martinson NA , Kahn K , Tollman S , Lebina L , Wafawanaka F , du Toit J , Gómez-Olivé FX , Dawood FS , Mkhencele T , Tempia S . BMC Infect Dis 2024 24 (1) 336 |
| Social and demographic factors associated with receipt of a COVID-19 vaccine initial booster dose and with interval between primary series completion and initial booster dose uptake among persons aged ≥ 12 years, United States, August 2021-October 2022
Meng L , Harris L , Shaw L , Lymon H , Reses H , Bell J , Lu PJ , Gibbs-Scharf L , Chorba T . Vaccine 2024 |
| Assessment of the performance of the plasma separation card for HIV-1 viral load monitoring in South Africa
Chimoyi L , Hans L , Oladimeji M , Kindra G , Diallo K , Ayalew K , Setswe GK , Carmona S . J Clin Microbiol 2024 e0164923
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- Page last reviewed:Feb 1, 2024
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